Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 RNU6-89P-201ENST00000606519 100 ntBASIC2.09□□□□□ -2.07
TNFRSF4P43489 AC104458.1-201ENST00000608243 463 ntBASIC2.09□□□□□ -2.07
TNFRSF4P43489 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC2.09□□□□□ -2.07
TNFRSF4P43489 AC097372.5-201ENST00000623665 376 ntBASIC2.09□□□□□ -2.07
TNFRSF4P43489 AC024614.3-201ENST00000637860 256 ntBASIC2.09□□□□□ -2.07
TNFRSF4P43489 RNU1-23P-201ENST00000363361 144 ntBASIC2.08□□□□□ -2.08
TNFRSF4P43489 RNU6-105P-201ENST00000363909 104 ntBASIC2.08□□□□□ -2.08
TNFRSF4P43489 RNU6-82P-201ENST00000363970 107 ntBASIC2.08□□□□□ -2.08
TNFRSF4P43489 SNORA25B-201ENST00000365507 128 ntBASIC2.08□□□□□ -2.08
TNFRSF4P43489 Y_RNA.373-201ENST00000365600 103 ntBASIC2.08□□□□□ -2.08
TNFRSF4P43489 AL591034.2-201ENST00000402839 359 ntBASIC2.08□□□□□ -2.08
TNFRSF4P43489 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC2.08□□□□□ -2.08
TNFRSF4P43489 USP9YP8-201ENST00000441913 500 ntBASIC2.08□□□□□ -2.08
TNFRSF4P43489 NFU1P2-201ENST00000448700 469 ntBASIC2.08□□□□□ -2.08
TNFRSF4P43489 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC2.08□□□□□ -2.08
TNFRSF4P43489 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.08□□□□□ -2.08
TNFRSF4P43489 RNU6-1208P-201ENST00000459588 107 ntBASIC2.08□□□□□ -2.08
TNFRSF4P43489 AC069113.1-201ENST00000517763 267 ntBASIC2.08□□□□□ -2.08
TNFRSF4P43489 AP000763.2-201ENST00000540641 163 ntBASIC2.08□□□□□ -2.08
TNFRSF4P43489 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC2.08□□□□□ -2.08
TNFRSF4P43489 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.08□□□□□ -2.08
TNFRSF4P43489 MTCO3P23-201ENST00000561363 289 ntBASIC2.08□□□□□ -2.08
TNFRSF4P43489 AC091135.1-201ENST00000585943 307 ntBASIC2.08□□□□□ -2.08
TNFRSF4P43489 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.08□□□□□ -2.08
TNFRSF4P43489 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.08□□□□□ -2.08
TNFRSF4P43489 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.07□□□□□ -2.08
TNFRSF4P43489 MIR544A-201ENST00000384855 91 ntBASIC2.07□□□□□ -2.08
TNFRSF4P43489 RNU6-332P-201ENST00000391193 108 ntBASIC2.07□□□□□ -2.08
TNFRSF4P43489 RNU6-373P-201ENST00000411247 98 ntBASIC2.07□□□□□ -2.08
TNFRSF4P43489 SNORD56-201ENST00000413522 71 ntBASIC2.07□□□□□ -2.08
TNFRSF4P43489 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.07□□□□□ -2.08
TNFRSF4P43489 EDDM3CP-201ENST00000415977 425 ntBASIC2.07□□□□□ -2.08
TNFRSF4P43489 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.07□□□□□ -2.08
TNFRSF4P43489 AC087884.1-201ENST00000469738 328 ntBASIC2.07□□□□□ -2.08
TNFRSF4P43489 AC083904.1-201ENST00000487828 231 ntBASIC2.07□□□□□ -2.08
TNFRSF4P43489 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.07□□□□□ -2.08
TNFRSF4P43489 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.07□□□□□ -2.08
TNFRSF4P43489 SNORA4.4-201ENST00000515921 135 ntBASIC2.07□□□□□ -2.08
TNFRSF4P43489 SNORA19.2-201ENST00000516013 114 ntBASIC2.07□□□□□ -2.08
TNFRSF4P43489 RNU7-193P-201ENST00000516723 65 ntBASIC2.07□□□□□ -2.08
TNFRSF4P43489 SNORA25.17-201ENST00000517184 124 ntBASIC2.07□□□□□ -2.08
TNFRSF4P43489 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC2.07□□□□□ -2.08
TNFRSF4P43489 AC011494.1-201ENST00000596454 237 ntBASIC2.07□□□□□ -2.08
TNFRSF4P43489 Y_RNA.783-201ENST00000613546 102 ntBASIC2.07□□□□□ -2.08
TNFRSF4P43489 AL159153.1-201ENST00000619688 317 ntBASIC2.07□□□□□ -2.08
TNFRSF4P43489 AC012640.5-201ENST00000623897 319 ntBASIC2.07□□□□□ -2.08
TNFRSF4P43489 MIR203B-201ENST00000636080 86 ntBASIC2.07□□□□□ -2.08
TNFRSF4P43489 AC100810.6-201ENST00000638068 285 ntBASIC2.07□□□□□ -2.08
TNFRSF4P43489 MIRLET7G-201ENST00000362280 84 ntBASIC2.06□□□□□ -2.08
TNFRSF4P43489 RNA5SP99-201ENST00000364020 114 ntBASIC2.06□□□□□ -2.08
TNFRSF4P43489 Y_RNA.248-201ENST00000364501 109 ntBASIC2.06□□□□□ -2.08
TNFRSF4P43489 RNU6-1222P-201ENST00000384615 107 ntBASIC2.06□□□□□ -2.08
TNFRSF4P43489 MIR583-201ENST00000384846 75 ntBASIC2.06□□□□□ -2.08
TNFRSF4P43489 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
TNFRSF4P43489 SNORD23.1-201ENST00000408212 104 ntBASIC2.06□□□□□ -2.08
TNFRSF4P43489 Y_RNA.615-201ENST00000410769 117 ntBASIC2.06□□□□□ -2.08
TNFRSF4P43489 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC2.06□□□□□ -2.08
TNFRSF4P43489 AL031274.1-201ENST00000450334 232 ntBASIC2.06□□□□□ -2.08
TNFRSF4P43489 HMGN2P26-201ENST00000463169 339 ntBASIC2.06□□□□□ -2.08
TNFRSF4P43489 RPL30P1-201ENST00000488676 339 ntBASIC2.06□□□□□ -2.08
TNFRSF4P43489 MTCYBP18-201ENST00000501056 747 ntBASIC2.06□□□□□ -2.08
TNFRSF4P43489 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC2.06□□□□□ -2.08
TNFRSF4P43489 SNORA14.1-201ENST00000516113 141 ntBASIC2.06□□□□□ -2.08
TNFRSF4P43489 RN7SKP256-201ENST00000517201 314 ntBASIC2.06□□□□□ -2.08
TNFRSF4P43489 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC2.06□□□□□ -2.08
TNFRSF4P43489 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.06□□□□□ -2.08
TNFRSF4P43489 AC034114.1-201ENST00000520293 285 ntBASIC2.06□□□□□ -2.08
TNFRSF4P43489 RNU6-323P-201ENST00000521915 107 ntBASIC2.06□□□□□ -2.08
TNFRSF4P43489 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC2.06□□□□□ -2.08
TNFRSF4P43489 CYCSP27-201ENST00000527643 293 ntBASIC2.06□□□□□ -2.08
TNFRSF4P43489 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.06□□□□□ -2.08
TNFRSF4P43489 RPS3AP23-202ENST00000574601 686 ntBASIC2.06□□□□□ -2.08
TNFRSF4P43489 APOOP1-201ENST00000604695 592 ntBASIC2.06□□□□□ -2.08
TNFRSF4P43489 ELOCP5-201ENST00000604924 333 ntBASIC2.06□□□□□ -2.08
TNFRSF4P43489 AC123912.5-201ENST00000605470 343 ntBASIC2.06□□□□□ -2.08
TNFRSF4P43489 RNU6-85P-201ENST00000605989 107 ntBASIC2.06□□□□□ -2.08
TNFRSF4P43489 AL357078.3-201ENST00000607528 618 ntBASIC2.06□□□□□ -2.08
TNFRSF4P43489 AL121757.2-201ENST00000611223 313 ntBASIC2.06□□□□□ -2.08
TNFRSF4P43489 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
TNFRSF4P43489 AC131280.1-202ENST00000624067 4211 ntBASIC2.06□□□□□ -2.08
TNFRSF4P43489 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
TNFRSF4P43489 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.05□□□□□ -2.08
TNFRSF4P43489 RNU6-1159P-201ENST00000362933 107 ntBASIC2.05□□□□□ -2.08
TNFRSF4P43489 RNU6-522P-201ENST00000364497 107 ntBASIC2.05□□□□□ -2.08
TNFRSF4P43489 U3.13-201ENST00000364804 214 ntBASIC2.05□□□□□ -2.08
TNFRSF4P43489 RNU6-1274P-201ENST00000384557 107 ntBASIC2.05□□□□□ -2.08
TNFRSF4P43489 MIR29B2-201ENST00000385055 81 ntBASIC2.05□□□□□ -2.08
TNFRSF4P43489 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
TNFRSF4P43489 AL139156.1-201ENST00000412785 841 ntBASIC2.05□□□□□ -2.08
TNFRSF4P43489 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC2.05□□□□□ -2.08
TNFRSF4P43489 MRPS10P2-201ENST00000431226 381 ntBASIC2.05□□□□□ -2.08
TNFRSF4P43489 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
TNFRSF4P43489 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.05□□□□□ -2.08
TNFRSF4P43489 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.05□□□□□ -2.08
TNFRSF4P43489 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC2.05□□□□□ -2.08
TNFRSF4P43489 Y_RNA.665-201ENST00000516177 98 ntBASIC2.05□□□□□ -2.08
TNFRSF4P43489 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC2.05□□□□□ -2.08
TNFRSF4P43489 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC2.05□□□□□ -2.08
TNFRSF4P43489 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC2.05□□□□□ -2.08
TNFRSF4P43489 AC068944.2-201ENST00000610373 403 ntBASIC2.05□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 166.3 ms