Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC2.65□□□□□ -1.99
SHMT1P34896 MIR548F5-201ENST00000408421 86 ntBASIC2.65□□□□□ -1.99
SHMT1P34896 Z98742.2-201ENST00000431564 187 ntBASIC2.65□□□□□ -1.99
SHMT1P34896 FTH1P25-201ENST00000447665 469 ntBASIC2.65□□□□□ -1.99
SHMT1P34896 RNU6-612P-201ENST00000516909 102 ntBASIC2.65□□□□□ -1.99
SHMT1P34896 RNU1-54P-201ENST00000517181 120 ntBASIC2.65□□□□□ -1.99
SHMT1P34896 AC105029.1-201ENST00000520250 669 ntBASIC2.65□□□□□ -1.99
SHMT1P34896 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.65□□□□□ -1.99
SHMT1P34896 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC2.65□□□□□ -1.99
SHMT1P34896 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.65□□□□□ -1.99
SHMT1P34896 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.65□□□□□ -1.99
SHMT1P34896 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC2.65□□□□□ -1.99
SHMT1P34896 AC079598.5-201ENST00000547460 117 ntBASIC2.65□□□□□ -1.99
SHMT1P34896 CPDP1-201ENST00000579660 283 ntBASIC2.65□□□□□ -1.99
SHMT1P34896 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.65□□□□□ -1.99
SHMT1P34896 AC018889.1-201ENST00000605372 397 ntBASIC2.65□□□□□ -1.99
SHMT1P34896 LARP7P1-201ENST00000605576 316 ntBASIC2.65□□□□□ -1.99
SHMT1P34896 AL133215.3-201ENST00000609801 448 ntBASIC2.65□□□□□ -1.99
SHMT1P34896 AC007792.1-201ENST00000623023 402 ntBASIC2.65□□□□□ -1.99
SHMT1P34896 AC099654.5-201ENST00000636479 350 ntBASIC2.65□□□□□ -1.99
SHMT1P34896 AC241585.2-209ENST00000638217 143 ntBASIC2.65□□□□□ -1.99
SHMT1P34896 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
SHMT1P34896 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.64□□□□□ -1.99
SHMT1P34896 Y_RNA.151-201ENST00000363566 112 ntBASIC2.64□□□□□ -1.99
SHMT1P34896 RNU1-51P-201ENST00000365345 176 ntBASIC2.64□□□□□ -1.99
SHMT1P34896 RNU6-790P-201ENST00000384479 105 ntBASIC2.64□□□□□ -1.99
SHMT1P34896 RNU6-1222P-201ENST00000384615 107 ntBASIC2.64□□□□□ -1.99
SHMT1P34896 MIR544A-201ENST00000384855 91 ntBASIC2.64□□□□□ -1.99
SHMT1P34896 RN7SKP158-201ENST00000410453 326 ntBASIC2.64□□□□□ -1.99
SHMT1P34896 AP000275.1-201ENST00000411943 390 ntBASIC2.64□□□□□ -1.99
SHMT1P34896 RPL37P10-201ENST00000412884 288 ntBASIC2.64□□□□□ -1.99
SHMT1P34896 AC097463.2-201ENST00000421074 142 ntBASIC2.64□□□□□ -1.99
SHMT1P34896 FGF7P4-201ENST00000509595 295 ntBASIC2.64□□□□□ -1.99
SHMT1P34896 RNA5SP112-201ENST00000515937 99 ntBASIC2.64□□□□□ -1.99
SHMT1P34896 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.64□□□□□ -1.99
SHMT1P34896 MIR3670-2-201ENST00000582974 65 ntBASIC2.64□□□□□ -1.99
SHMT1P34896 MIR3670-1-201ENST00000584160 65 ntBASIC2.64□□□□□ -1.99
SHMT1P34896 MIR3670-3-201ENST00000584855 65 ntBASIC2.64□□□□□ -1.99
SHMT1P34896 AP001836.1-201ENST00000604675 523 ntBASIC2.64□□□□□ -1.99
SHMT1P34896 AC124303.1-201ENST00000605703 360 ntBASIC2.64□□□□□ -1.99
SHMT1P34896 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
SHMT1P34896 AC019193.3-201ENST00000609144 554 ntBASIC2.64□□□□□ -1.99
SHMT1P34896 MIR3670-4-201ENST00000612260 65 ntBASIC2.64□□□□□ -1.99
SHMT1P34896 AL161423.1-201ENST00000613700 262 ntBASIC2.64□□□□□ -1.99
SHMT1P34896 Y_RNA.804-201ENST00000615262 101 ntBASIC2.64□□□□□ -1.99
SHMT1P34896 MIR6128-201ENST00000615528 109 ntBASIC2.64□□□□□ -1.99
SHMT1P34896 AC010297.1-201ENST00000623948 149 ntBASIC2.64□□□□□ -1.99
SHMT1P34896 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.64□□□□□ -1.99
SHMT1P34896 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.64□□□□□ -1.99
SHMT1P34896 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.64□□□□□ -1.99
SHMT1P34896 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.64□□□□□ -1.99
SHMT1P34896 AC002543.1-201ENST00000299783 1954 ntBASIC2.63□□□□□ -1.99
SHMT1P34896 RNU6-227P-201ENST00000362865 103 ntBASIC2.63□□□□□ -1.99
SHMT1P34896 RNU6-486P-201ENST00000363116 107 ntBASIC2.63□□□□□ -1.99
SHMT1P34896 RNU6-593P-201ENST00000364716 112 ntBASIC2.63□□□□□ -1.99
SHMT1P34896 RNU1-138P-201ENST00000384093 164 ntBASIC2.63□□□□□ -1.99
SHMT1P34896 RNU6-692P-201ENST00000384496 107 ntBASIC2.63□□□□□ -1.99
SHMT1P34896 SNORA64-201ENST00000384674 134 ntBASIC2.63□□□□□ -1.99
SHMT1P34896 MIR517A-201ENST00000385001 87 ntBASIC2.63□□□□□ -1.99
SHMT1P34896 MT-TD-201ENST00000387419 68 ntBASIC2.63□□□□□ -1.99
SHMT1P34896 AL513475.1-201ENST00000406602 315 ntBASIC2.63□□□□□ -1.99
SHMT1P34896 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.63□□□□□ -1.99
SHMT1P34896 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC2.63□□□□□ -1.99
SHMT1P34896 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.63□□□□□ -1.99
SHMT1P34896 MICF-203ENST00000432679 129 ntBASIC2.63□□□□□ -1.99
SHMT1P34896 RPS3AP52-201ENST00000435639 297 ntBASIC2.63□□□□□ -1.99
SHMT1P34896 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC2.63□□□□□ -1.99
SHMT1P34896 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.63□□□□□ -1.99
SHMT1P34896 DAP3P1-201ENST00000441522 278 ntBASIC2.63□□□□□ -1.99
SHMT1P34896 RPL39P29-201ENST00000447779 157 ntBASIC2.63□□□□□ -1.99
SHMT1P34896 AP000705.1-201ENST00000454567 350 ntBASIC2.63□□□□□ -1.99
SHMT1P34896 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.63□□□□□ -1.99
SHMT1P34896 AC112771.1-201ENST00000463581 102 ntBASIC2.63□□□□□ -1.99
SHMT1P34896 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC2.63□□□□□ -1.99
SHMT1P34896 SNORA31.15-201ENST00000516771 132 ntBASIC2.63□□□□□ -1.99
SHMT1P34896 RN7SKP40-201ENST00000517211 242 ntBASIC2.63□□□□□ -1.99
SHMT1P34896 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC2.63□□□□□ -1.99
SHMT1P34896 AP005902.1-201ENST00000521358 186 ntBASIC2.63□□□□□ -1.99
SHMT1P34896 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC2.63□□□□□ -1.99
SHMT1P34896 AL049779.4-201ENST00000604500 156 ntBASIC2.63□□□□□ -1.99
SHMT1P34896 MIR6873-201ENST00000622788 63 ntBASIC2.63□□□□□ -1.99
SHMT1P34896 MAPK10-266ENST00000641066 6555 ntBASIC2.63□□□□□ -1.99
SHMT1P34896 BTF3L4P2-201ENST00000392798 346 ntBASIC2.62□□□□□ -1.99
SHMT1P34896 AL023284.1-201ENST00000403956 276 ntBASIC2.62□□□□□ -1.99
SHMT1P34896 RNU2-23P-201ENST00000410545 195 ntBASIC2.62□□□□□ -1.99
SHMT1P34896 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC2.62□□□□□ -1.99
SHMT1P34896 SUMO1P4-201ENST00000429430 302 ntBASIC2.62□□□□□ -1.99
SHMT1P34896 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.62□□□□□ -1.99
SHMT1P34896 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC2.62□□□□□ -1.99
SHMT1P34896 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
SHMT1P34896 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2.62□□□□□ -1.99
SHMT1P34896 Y_RNA.635-201ENST00000459041 101 ntBASIC2.62□□□□□ -1.99
SHMT1P34896 RPL30P12-201ENST00000474666 353 ntBASIC2.62□□□□□ -1.99
SHMT1P34896 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC2.62□□□□□ -1.99
SHMT1P34896 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC2.62□□□□□ -1.99
SHMT1P34896 AC116337.1-201ENST00000509680 687 ntBASIC2.62□□□□□ -1.99
SHMT1P34896 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.62□□□□□ -1.99
SHMT1P34896 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.62□□□□□ -1.99
SHMT1P34896 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.62□□□□□ -1.99
SHMT1P34896 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.62□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 151.6 ms