Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 Y_RNA.597-201ENST00000410463 100 ntBASIC-0.49□□□□□ -2.49
HMGA1P17096 AL022718.1-201ENST00000412004 84 ntBASIC-0.49□□□□□ -2.49
HMGA1P17096 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC-0.49□□□□□ -2.49
HMGA1P17096 MTCO3P45-201ENST00000443036 613 ntBASIC-0.49□□□□□ -2.49
HMGA1P17096 RNU6-1110P-201ENST00000516462 101 ntBASIC-0.49□□□□□ -2.49
HMGA1P17096 RNU6-1183P-201ENST00000517054 60 ntBASIC-0.49□□□□□ -2.49
HMGA1P17096 AC106038.2-201ENST00000520706 568 ntBASIC-0.49□□□□□ -2.49
HMGA1P17096 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC-0.49□□□□□ -2.49
HMGA1P17096 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC-0.49□□□□□ -2.49
HMGA1P17096 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC-0.49□□□□□ -2.49
HMGA1P17096 SNORA59B-202ENST00000578183 701 ntBASIC-0.49□□□□□ -2.49
HMGA1P17096 MIR4493-201ENST00000584016 73 ntBASIC-0.49□□□□□ -2.49
HMGA1P17096 AC092447.9-201ENST00000603395 144 ntBASIC-0.49□□□□□ -2.49
HMGA1P17096 AC079610.2-201ENST00000604818 690 ntBASIC-0.49□□□□□ -2.49
HMGA1P17096 MIR421-201ENST00000365696 85 ntBASIC-0.5□□□□□ -2.49
HMGA1P17096 RNU6-46P-201ENST00000383860 107 ntBASIC-0.5□□□□□ -2.49
HMGA1P17096 RNU6-929P-201ENST00000384429 107 ntBASIC-0.5□□□□□ -2.49
HMGA1P17096 RNU6-177P-201ENST00000411257 104 ntBASIC-0.5□□□□□ -2.49
HMGA1P17096 MTND2P21-201ENST00000436242 1042 ntBASIC-0.5□□□□□ -2.49
HMGA1P17096 RPL7P55-201ENST00000450522 746 ntBASIC-0.5□□□□□ -2.49
HMGA1P17096 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC-0.5□□□□□ -2.49
HMGA1P17096 SNORA25.12-201ENST00000516202 82 ntBASIC-0.5□□□□□ -2.49
HMGA1P17096 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC-0.5□□□□□ -2.49
HMGA1P17096 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC-0.5□□□□□ -2.49
HMGA1P17096 AC104985.3-201ENST00000623479 597 ntBASIC-0.5□□□□□ -2.49
HMGA1P17096 RNU6-655P-201ENST00000362858 107 ntBASIC-0.51□□□□□ -2.49
HMGA1P17096 RNA5SP504-201ENST00000410676 117 ntBASIC-0.51□□□□□ -2.49
HMGA1P17096 ATP6V0E1P1-201ENST00000412537 226 ntBASIC-0.51□□□□□ -2.49
HMGA1P17096 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC-0.51□□□□□ -2.49
HMGA1P17096 GTF2IP3-201ENST00000433887 494 ntBASIC-0.51□□□□□ -2.49
HMGA1P17096 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC-0.51□□□□□ -2.49
HMGA1P17096 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC-0.51□□□□□ -2.49
HMGA1P17096 AC022364.2-201ENST00000457963 554 ntBASIC-0.51□□□□□ -2.49
HMGA1P17096 RPL32P14-201ENST00000463196 378 ntBASIC-0.51□□□□□ -2.49
HMGA1P17096 AC010469.2-201ENST00000496412 480 ntBASIC-0.51□□□□□ -2.49
HMGA1P17096 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC-0.51□□□□□ -2.49
HMGA1P17096 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC-0.51□□□□□ -2.49
HMGA1P17096 LARP7P2-201ENST00000575306 125 ntBASIC-0.51□□□□□ -2.49
HMGA1P17096 AC064807.4-201ENST00000607201 407 ntBASIC-0.51□□□□□ -2.49
HMGA1P17096 GHRLOS.1-201ENST00000610995 70 ntBASIC-0.51□□□□□ -2.49
HMGA1P17096 Y_RNA.294-201ENST00000364916 102 ntBASIC-0.52□□□□□ -2.49
HMGA1P17096 Y_RNA.330-201ENST00000365230 109 ntBASIC-0.52□□□□□ -2.49
HMGA1P17096 SNORA2A-201ENST00000383885 135 ntBASIC-0.52□□□□□ -2.49
HMGA1P17096 MIR643-201ENST00000385267 97 ntBASIC-0.52□□□□□ -2.49
HMGA1P17096 RNA5SP451-201ENST00000410588 110 ntBASIC-0.52□□□□□ -2.49
HMGA1P17096 SNORD71-201ENST00000411292 86 ntBASIC-0.52□□□□□ -2.49
HMGA1P17096 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC-0.52□□□□□ -2.49
HMGA1P17096 TAF13P2-201ENST00000416876 286 ntBASIC-0.52□□□□□ -2.49
HMGA1P17096 MED13P1-201ENST00000428342 171 ntBASIC-0.52□□□□□ -2.49
HMGA1P17096 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC-0.52□□□□□ -2.49
HMGA1P17096 AC023194.1-201ENST00000493084 308 ntBASIC-0.52□□□□□ -2.49
HMGA1P17096 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC-0.52□□□□□ -2.49
HMGA1P17096 AC114811.1-201ENST00000507207 168 ntBASIC-0.52□□□□□ -2.49
HMGA1P17096 SNORA70.12-201ENST00000516084 153 ntBASIC-0.52□□□□□ -2.49
HMGA1P17096 RNA5SP476-201ENST00000516613 103 ntBASIC-0.52□□□□□ -2.49
HMGA1P17096 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC-0.52□□□□□ -2.49
HMGA1P17096 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC-0.52□□□□□ -2.49
HMGA1P17096 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC-0.52□□□□□ -2.49
HMGA1P17096 AP001981.2-201ENST00000603241 418 ntBASIC-0.52□□□□□ -2.49
HMGA1P17096 AL158211.4-201ENST00000606988 584 ntBASIC-0.52□□□□□ -2.49
HMGA1P17096 MIR548AZ-201ENST00000616567 95 ntBASIC-0.52□□□□□ -2.49
HMGA1P17096 AC119674.1-220ENST00000641502 1048 ntBASIC-0.52□□□□□ -2.49
HMGA1P17096 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC-0.52□□□□□ -2.49
HMGA1P17096 DLEU2_6.3-201ENST00000340052 136 ntBASIC-0.53□□□□□ -2.49
HMGA1P17096 MIR101-1-201ENST00000362265 75 ntBASIC-0.53□□□□□ -2.49
HMGA1P17096 SNORA1.1-201ENST00000364671 133 ntBASIC-0.53□□□□□ -2.49
HMGA1P17096 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC-0.53□□□□□ -2.49
HMGA1P17096 MIR593-201ENST00000384856 100 ntBASIC-0.53□□□□□ -2.49
HMGA1P17096 MIR106A-201ENST00000384870 81 ntBASIC-0.53□□□□□ -2.49
HMGA1P17096 AC019178.2-201ENST00000423595 505 ntBASIC-0.53□□□□□ -2.49
HMGA1P17096 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC-0.53□□□□□ -2.49
HMGA1P17096 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC-0.53□□□□□ -2.49
HMGA1P17096 NDUFA5P7-201ENST00000452914 242 ntBASIC-0.53□□□□□ -2.49
HMGA1P17096 AL353752.1-201ENST00000454946 260 ntBASIC-0.53□□□□□ -2.49
HMGA1P17096 AC016925.1-201ENST00000458303 298 ntBASIC-0.53□□□□□ -2.49
HMGA1P17096 AC114981.1-201ENST00000503897 678 ntBASIC-0.53□□□□□ -2.49
HMGA1P17096 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC-0.53□□□□□ -2.49
HMGA1P17096 RNU6-863P-201ENST00000515989 104 ntBASIC-0.53□□□□□ -2.49
HMGA1P17096 MTND2P7-201ENST00000521337 640 ntBASIC-0.53□□□□□ -2.49
HMGA1P17096 AC093027.1-201ENST00000546698 429 ntBASIC-0.53□□□□□ -2.49
HMGA1P17096 AC026371.1-201ENST00000551867 419 ntBASIC-0.53□□□□□ -2.49
HMGA1P17096 PCGEM1.1-201ENST00000613431 131 ntBASIC-0.53□□□□□ -2.49
HMGA1P17096 AC010133.1-201ENST00000615809 842 ntBASIC-0.53□□□□□ -2.49
HMGA1P17096 DLEU2_6.2-201ENST00000620994 136 ntBASIC-0.53□□□□□ -2.49
HMGA1P17096 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC-0.53□□□□□ -2.49
HMGA1P17096 AC004009.2-201ENST00000623016 728 ntBASIC-0.53□□□□□ -2.49
HMGA1P17096 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC-0.54□□□□□ -2.5
HMGA1P17096 RNU6-858P-201ENST00000362436 107 ntBASIC-0.54□□□□□ -2.5
HMGA1P17096 RNU4-73P-201ENST00000363164 141 ntBASIC-0.54□□□□□ -2.5
HMGA1P17096 SNORA32.3-201ENST00000384772 121 ntBASIC-0.54□□□□□ -2.5
HMGA1P17096 MIR610-201ENST00000385139 96 ntBASIC-0.54□□□□□ -2.5
HMGA1P17096 LINC00434-201ENST00000423739 419 ntTSL 3 BASIC-0.54□□□□□ -2.5
HMGA1P17096 AP000797.1-201ENST00000478870 387 ntBASIC-0.54□□□□□ -2.5
HMGA1P17096 AC008628.1-201ENST00000508663 265 ntBASIC-0.54□□□□□ -2.5
HMGA1P17096 AL020997.3-201ENST00000602843 359 ntBASIC-0.54□□□□□ -2.5
HMGA1P17096 AL358072.1-201ENST00000604156 575 ntBASIC-0.54□□□□□ -2.5
HMGA1P17096 SNORA25.18-201ENST00000607153 114 ntBASIC-0.54□□□□□ -2.5
HMGA1P17096 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC-0.54□□□□□ -2.5
HMGA1P17096 RNU6ATAC25P-201ENST00000408798 117 ntBASIC-0.55□□□□□ -2.5
HMGA1P17096 RPL23AP50-201ENST00000434149 455 ntBASIC-0.55□□□□□ -2.5
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms