Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC091152.3-201ENST00000604227 325 ntBASIC1.93□□□□□ -2.1
HOXC4P09017 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
HOXC4P09017 AL132765.2-201ENST00000610812 351 ntBASIC1.93□□□□□ -2.1
HOXC4P09017 AC093913.1-201ENST00000614178 329 ntBASIC1.93□□□□□ -2.1
HOXC4P09017 AL512643.1-201ENST00000635735 524 ntBASIC1.93□□□□□ -2.1
HOXC4P09017 AC099654.5-201ENST00000636479 350 ntBASIC1.93□□□□□ -2.1
HOXC4P09017 ATP8A2P2-201ENST00000437678 1568 ntBASIC1.93□□□□□ -2.1
HOXC4P09017 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
HOXC4P09017 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
HOXC4P09017 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
HOXC4P09017 OR56A5-201ENST00000340110 738 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 Y_RNA.58-201ENST00000362807 102 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 SNORD3E-201ENST00000362899 217 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 Y_RNA.154-201ENST00000363624 102 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 Y_RNA.813-201ENST00000364639 102 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 RNY3P1-201ENST00000365085 102 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 RNY3-201ENST00000365484 102 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.92□□□□□ -2.1
HOXC4P09017 Y_RNA.414-201ENST00000384011 101 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 Y_RNA.490-201ENST00000384413 102 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 RNU6-45P-201ENST00000384471 107 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 RNU6-658P-201ENST00000384606 106 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 RNU6-19P-201ENST00000384718 107 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 MIR147B-201ENST00000390185 80 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 RNA5SP338-201ENST00000410495 85 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 AC009161.1-201ENST00000417306 376 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC1.92□□□□□ -2.1
HOXC4P09017 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC1.92□□□□□ -2.1
HOXC4P09017 AC003685.2-201ENST00000422795 395 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 RPL30P4-201ENST00000429309 333 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 FABP5P14-201ENST00000437273 393 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC1.92□□□□□ -2.1
HOXC4P09017 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC1.92□□□□□ -2.1
HOXC4P09017 PPP1R2P5-201ENST00000457256 603 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC1.92□□□□□ -2.1
HOXC4P09017 MTND3P22-201ENST00000510932 243 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 AC107393.1-201ENST00000512403 346 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 RNU6-277P-201ENST00000516272 106 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 RNU1-40P-201ENST00000516816 164 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 RNU1-97P-201ENST00000516872 164 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 RNU6-295P-201ENST00000516901 104 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 RN7SKP256-201ENST00000517201 314 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 AC105029.1-201ENST00000520250 669 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 UTP23-205ENST00000520733 369 ntTSL 3 BASIC1.92□□□□□ -2.1
HOXC4P09017 AP000763.2-201ENST00000540641 163 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC1.92□□□□□ -2.1
HOXC4P09017 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.92□□□□□ -2.1
HOXC4P09017 SNORD14A-201ENST00000606526 91 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 AC009233.1-201ENST00000616477 371 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 AC103705.1-201ENST00000619013 241 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 AC098657.3-201ENST00000620434 263 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 uc_338.20-201ENST00000621563 178 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 RMST_7.1-201ENST00000621935 268 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 AL359757.2-201ENST00000624309 274 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 TPTEP1-208ENST00000636884 213 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 AC121333.1-201ENST00000567488 2709 ntBASIC1.92□□□□□ -2.1
HOXC4P09017 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC1.91□□□□□ -2.1
HOXC4P09017 AC006026.1-201ENST00000444025 1803 ntBASIC1.91□□□□□ -2.1
HOXC4P09017 MTND4P1-201ENST00000457501 1466 ntBASIC1.91□□□□□ -2.1
HOXC4P09017 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC1.91□□□□□ -2.1
HOXC4P09017 Y_RNA.100-201ENST00000363141 102 ntBASIC1.91□□□□□ -2.1
HOXC4P09017 RNU6-254P-201ENST00000363377 107 ntBASIC1.91□□□□□ -2.1
HOXC4P09017 RNU6-82P-201ENST00000363970 107 ntBASIC1.91□□□□□ -2.1
HOXC4P09017 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
HOXC4P09017 Y_RNA.399-201ENST00000383955 105 ntBASIC1.91□□□□□ -2.1
HOXC4P09017 RNU6-510P-201ENST00000391239 108 ntBASIC1.91□□□□□ -2.1
HOXC4P09017 RNU4-14P-201ENST00000410858 122 ntBASIC1.91□□□□□ -2.1
HOXC4P09017 AL030996.1-201ENST00000411430 235 ntBASIC1.91□□□□□ -2.1
HOXC4P09017 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC1.91□□□□□ -2.1
HOXC4P09017 PTGES3P4-201ENST00000426243 356 ntBASIC1.91□□□□□ -2.1
HOXC4P09017 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.91□□□□□ -2.1
HOXC4P09017 AL591704.1-201ENST00000432574 275 ntBASIC1.91□□□□□ -2.1
HOXC4P09017 HMGB1P18-201ENST00000438801 619 ntBASIC1.91□□□□□ -2.1
HOXC4P09017 MTND4LP16-201ENST00000440828 295 ntBASIC1.91□□□□□ -2.1
HOXC4P09017 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC1.91□□□□□ -2.1
HOXC4P09017 AL021397.1-201ENST00000451806 248 ntBASIC1.91□□□□□ -2.1
HOXC4P09017 OARD1-209ENST00000471367 401 ntTSL 2 BASIC1.91□□□□□ -2.1
HOXC4P09017 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC1.91□□□□□ -2.1
HOXC4P09017 TRBVA-201ENST00000498804 316 ntBASIC1.91□□□□□ -2.1
HOXC4P09017 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC1.91□□□□□ -2.1
HOXC4P09017 FGF7P4-201ENST00000509595 295 ntBASIC1.91□□□□□ -2.1
HOXC4P09017 AC116337.1-201ENST00000509680 687 ntBASIC1.91□□□□□ -2.1
HOXC4P09017 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC1.91□□□□□ -2.1
HOXC4P09017 RNU1-86P-201ENST00000516108 154 ntBASIC1.91□□□□□ -2.1
HOXC4P09017 RNU6-189P-201ENST00000516120 101 ntBASIC1.91□□□□□ -2.1
HOXC4P09017 RNU6-864P-201ENST00000516256 108 ntBASIC1.91□□□□□ -2.1
HOXC4P09017 RNU1-107P-201ENST00000516617 154 ntBASIC1.91□□□□□ -2.1
HOXC4P09017 AC009902.1-201ENST00000519351 183 ntBASIC1.91□□□□□ -2.1
HOXC4P09017 AC084851.1-201ENST00000529105 249 ntBASIC1.91□□□□□ -2.1
HOXC4P09017 MTCO3P23-201ENST00000561363 289 ntBASIC1.91□□□□□ -2.1
HOXC4P09017 MIR3124-201ENST00000582636 67 ntBASIC1.91□□□□□ -2.1
HOXC4P09017 MIR3672-201ENST00000584290 82 ntBASIC1.91□□□□□ -2.1
HOXC4P09017 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC1.91□□□□□ -2.1
HOXC4P09017 AC243960.4-201ENST00000600532 288 ntBASIC1.91□□□□□ -2.1
HOXC4P09017 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC1.91□□□□□ -2.1
HOXC4P09017 AC087045.1-201ENST00000605856 382 ntBASIC1.91□□□□□ -2.1
HOXC4P09017 AC002044.1-201ENST00000606707 158 ntBASIC1.91□□□□□ -2.1
HOXC4P09017 FAM157A-202ENST00000615155 405 ntBASIC1.91□□□□□ -2.1
HOXC4P09017 AC244517.12-201ENST00000623581 663 ntBASIC1.91□□□□□ -2.1
HOXC4P09017 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.91□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms