Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 AC114982.1-201ENST00000469402 321 ntBASIC4.28□□□□□ -1.72
USP3Q9Y6I4 SNORA25.12-201ENST00000516202 82 ntBASIC4.28□□□□□ -1.72
USP3Q9Y6I4 AC109810.1-201ENST00000534066 224 ntBASIC4.28□□□□□ -1.72
USP3Q9Y6I4 EIF4A1P12-201ENST00000551910 141 ntBASIC4.28□□□□□ -1.72
USP3Q9Y6I4 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC4.28□□□□□ -1.72
USP3Q9Y6I4 AL391261.4-201ENST00000616012 481 ntBASIC4.28□□□□□ -1.72
USP3Q9Y6I4 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC4.28□□□□□ -1.72
USP3Q9Y6I4 AC008873.1-201ENST00000625051 138 ntBASIC4.28□□□□□ -1.72
USP3Q9Y6I4 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
USP3Q9Y6I4 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
USP3Q9Y6I4 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
USP3Q9Y6I4 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
USP3Q9Y6I4 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.28□□□□□ -1.72
USP3Q9Y6I4 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.28□□□□□ -1.73
USP3Q9Y6I4 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.27□□□□□ -1.73
USP3Q9Y6I4 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC4.27□□□□□ -1.73
USP3Q9Y6I4 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
USP3Q9Y6I4 Y_RNA.71-201ENST00000362892 104 ntBASIC4.27□□□□□ -1.73
USP3Q9Y6I4 Y_RNA.243-201ENST00000364481 109 ntBASIC4.27□□□□□ -1.73
USP3Q9Y6I4 RNA5SP479-201ENST00000364858 117 ntBASIC4.27□□□□□ -1.73
USP3Q9Y6I4 Y_RNA.293-201ENST00000364908 93 ntBASIC4.27□□□□□ -1.73
USP3Q9Y6I4 Y_RNA.456-201ENST00000384232 111 ntBASIC4.27□□□□□ -1.73
USP3Q9Y6I4 MIR513A2-201ENST00000385249 127 ntBASIC4.27□□□□□ -1.73
USP3Q9Y6I4 SNORA26.5-201ENST00000391215 123 ntBASIC4.27□□□□□ -1.73
USP3Q9Y6I4 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
USP3Q9Y6I4 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC4.27□□□□□ -1.73
USP3Q9Y6I4 AC005300.1-201ENST00000428401 373 ntBASIC4.27□□□□□ -1.73
USP3Q9Y6I4 RNU6-971P-201ENST00000516920 106 ntBASIC4.27□□□□□ -1.73
USP3Q9Y6I4 MIR3609-201ENST00000582661 80 ntBASIC4.27□□□□□ -1.73
USP3Q9Y6I4 PCGEM1.1-201ENST00000613431 131 ntBASIC4.27□□□□□ -1.73
USP3Q9Y6I4 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
USP3Q9Y6I4 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC4.27□□□□□ -1.73
USP3Q9Y6I4 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
USP3Q9Y6I4 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
USP3Q9Y6I4 AL672296.1-201ENST00000427780 2158 ntBASIC4.27□□□□□ -1.73
USP3Q9Y6I4 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.27□□□□□ -1.73
USP3Q9Y6I4 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.27□□□□□ -1.73
USP3Q9Y6I4 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
USP3Q9Y6I4 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
USP3Q9Y6I4 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
USP3Q9Y6I4 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
USP3Q9Y6I4 RNU6-270P-201ENST00000364131 105 ntBASIC4.26□□□□□ -1.73
USP3Q9Y6I4 Y_RNA.218-201ENST00000364218 104 ntBASIC4.26□□□□□ -1.73
USP3Q9Y6I4 Y_RNA.261-201ENST00000364631 102 ntBASIC4.26□□□□□ -1.73
USP3Q9Y6I4 RNA5SP283-201ENST00000365604 119 ntBASIC4.26□□□□□ -1.73
USP3Q9Y6I4 MIR549A-201ENST00000385268 96 ntBASIC4.26□□□□□ -1.73
USP3Q9Y6I4 RPL21P65-201ENST00000406094 466 ntBASIC4.26□□□□□ -1.73
USP3Q9Y6I4 CRYBB2P1-203ENST00000415709 538 ntBASIC4.26□□□□□ -1.73
USP3Q9Y6I4 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.26□□□□□ -1.73
USP3Q9Y6I4 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.26□□□□□ -1.73
USP3Q9Y6I4 AC091179.1-201ENST00000461606 579 ntBASIC4.26□□□□□ -1.73
USP3Q9Y6I4 RPL7AP28-201ENST00000464513 571 ntBASIC4.26□□□□□ -1.73
USP3Q9Y6I4 RPL29P14-201ENST00000495837 428 ntBASIC4.26□□□□□ -1.73
USP3Q9Y6I4 DEFB131C-201ENST00000528817 165 ntBASIC4.26□□□□□ -1.73
USP3Q9Y6I4 AC025627.2-201ENST00000576220 160 ntBASIC4.26□□□□□ -1.73
USP3Q9Y6I4 MIR3646-201ENST00000578301 84 ntBASIC4.26□□□□□ -1.73
USP3Q9Y6I4 AL110115.1-201ENST00000614396 364 ntBASIC4.26□□□□□ -1.73
USP3Q9Y6I4 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC4.26□□□□□ -1.73
USP3Q9Y6I4 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
USP3Q9Y6I4 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
USP3Q9Y6I4 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC4.26□□□□□ -1.73
USP3Q9Y6I4 AF117829.1-206ENST00000621883 3802 ntBASIC4.26□□□□□ -1.73
USP3Q9Y6I4 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.26□□□□□ -1.73
USP3Q9Y6I4 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
USP3Q9Y6I4 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC4.25□□□□□ -1.73
USP3Q9Y6I4 Y_RNA.172-201ENST00000363765 102 ntBASIC4.25□□□□□ -1.73
USP3Q9Y6I4 U3.9-201ENST00000363823 204 ntBASIC4.25□□□□□ -1.73
USP3Q9Y6I4 snoU2_19.4-201ENST00000364329 80 ntBASIC4.25□□□□□ -1.73
USP3Q9Y6I4 RNU6-818P-201ENST00000364837 108 ntBASIC4.25□□□□□ -1.73
USP3Q9Y6I4 RNU6-80P-201ENST00000384195 107 ntBASIC4.25□□□□□ -1.73
USP3Q9Y6I4 RNU6-19P-201ENST00000384718 107 ntBASIC4.25□□□□□ -1.73
USP3Q9Y6I4 MIR93-201ENST00000385024 80 ntBASIC4.25□□□□□ -1.73
USP3Q9Y6I4 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
USP3Q9Y6I4 MIR1193-201ENST00000408109 78 ntBASIC4.25□□□□□ -1.73
USP3Q9Y6I4 RN7SL132P-201ENST00000478131 296 ntBASIC4.25□□□□□ -1.73
USP3Q9Y6I4 AC006445.2-201ENST00000510061 472 ntBASIC4.25□□□□□ -1.73
USP3Q9Y6I4 SNORA70.12-201ENST00000516084 153 ntBASIC4.25□□□□□ -1.73
USP3Q9Y6I4 RNA5SP272-201ENST00000516095 111 ntBASIC4.25□□□□□ -1.73
USP3Q9Y6I4 AC112693.2-201ENST00000556538 232 ntBASIC4.25□□□□□ -1.73
USP3Q9Y6I4 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.25□□□□□ -1.73
USP3Q9Y6I4 MIR6868-201ENST00000611215 58 ntBASIC4.25□□□□□ -1.73
USP3Q9Y6I4 AL354798.1-201ENST00000622505 329 ntBASIC4.25□□□□□ -1.73
USP3Q9Y6I4 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC4.25□□□□□ -1.73
USP3Q9Y6I4 FTO-223ENST00000640179 210 ntTSL 5 BASIC4.25□□□□□ -1.73
USP3Q9Y6I4 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
USP3Q9Y6I4 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
USP3Q9Y6I4 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.25□□□□□ -1.73
USP3Q9Y6I4 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
USP3Q9Y6I4 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.25□□□□□ -1.73
USP3Q9Y6I4 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
USP3Q9Y6I4 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
USP3Q9Y6I4 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.24□□□□□ -1.73
USP3Q9Y6I4 RNU6-144P-201ENST00000383951 107 ntBASIC4.24□□□□□ -1.73
USP3Q9Y6I4 SNORA57.1-201ENST00000391227 145 ntBASIC4.24□□□□□ -1.73
USP3Q9Y6I4 AC245291.1-201ENST00000419501 328 ntBASIC4.24□□□□□ -1.73
USP3Q9Y6I4 YPEL5P1-201ENST00000419731 367 ntBASIC4.24□□□□□ -1.73
USP3Q9Y6I4 AC092017.2-201ENST00000427600 362 ntBASIC4.24□□□□□ -1.73
USP3Q9Y6I4 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC4.24□□□□□ -1.73
USP3Q9Y6I4 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.24□□□□□ -1.73
USP3Q9Y6I4 AL162151.2-201ENST00000448875 158 ntBASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms