Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.21□□□□□ -2.06
NKX3-1Q99801 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC2.21□□□□□ -2.06
NKX3-1Q99801 MTND5P30-201ENST00000452896 1731 ntBASIC2.2□□□□□ -2.06
NKX3-1Q99801 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.2□□□□□ -2.06
NKX3-1Q99801 Z82209.1-201ENST00000422141 2135 ntBASIC2.2□□□□□ -2.06
NKX3-1Q99801 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.2□□□□□ -2.06
NKX3-1Q99801 RNU6-486P-201ENST00000363116 107 ntBASIC2.2□□□□□ -2.06
NKX3-1Q99801 RNU6-1285P-201ENST00000363480 105 ntBASIC2.2□□□□□ -2.06
NKX3-1Q99801 Y_RNA.142-201ENST00000363491 102 ntBASIC2.2□□□□□ -2.06
NKX3-1Q99801 RNU6-1059P-201ENST00000363752 98 ntBASIC2.2□□□□□ -2.06
NKX3-1Q99801 RNU1-138P-201ENST00000384093 164 ntBASIC2.2□□□□□ -2.06
NKX3-1Q99801 RNU6-1032P-201ENST00000384100 107 ntBASIC2.2□□□□□ -2.06
NKX3-1Q99801 MIR517A-201ENST00000385001 87 ntBASIC2.2□□□□□ -2.06
NKX3-1Q99801 RNU6-1106P-201ENST00000390845 107 ntBASIC2.2□□□□□ -2.06
NKX3-1Q99801 RNU6-1245P-201ENST00000411130 106 ntBASIC2.2□□□□□ -2.06
NKX3-1Q99801 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.2□□□□□ -2.06
NKX3-1Q99801 BX276092.3-201ENST00000424182 230 ntBASIC2.2□□□□□ -2.06
NKX3-1Q99801 AIMP1P2-201ENST00000425294 312 ntBASIC2.2□□□□□ -2.06
NKX3-1Q99801 AC063976.3-201ENST00000426849 329 ntBASIC2.2□□□□□ -2.06
NKX3-1Q99801 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.2□□□□□ -2.06
NKX3-1Q99801 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC2.2□□□□□ -2.06
NKX3-1Q99801 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC2.2□□□□□ -2.06
NKX3-1Q99801 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.2□□□□□ -2.06
NKX3-1Q99801 RN7SKP24-201ENST00000515888 284 ntBASIC2.2□□□□□ -2.06
NKX3-1Q99801 RNA5SP112-201ENST00000515937 99 ntBASIC2.2□□□□□ -2.06
NKX3-1Q99801 RNA5SP282-201ENST00000516355 108 ntBASIC2.2□□□□□ -2.06
NKX3-1Q99801 Y_RNA.702-201ENST00000516843 96 ntBASIC2.2□□□□□ -2.06
NKX3-1Q99801 AC109329.2-201ENST00000519658 482 ntBASIC2.2□□□□□ -2.06
NKX3-1Q99801 AP005902.1-201ENST00000521358 186 ntBASIC2.2□□□□□ -2.06
NKX3-1Q99801 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC2.2□□□□□ -2.06
NKX3-1Q99801 AC073410.2-201ENST00000603240 332 ntBASIC2.2□□□□□ -2.06
NKX3-1Q99801 AL022345.1-201ENST00000607292 135 ntBASIC2.2□□□□□ -2.06
NKX3-1Q99801 AC019193.3-201ENST00000609144 554 ntBASIC2.2□□□□□ -2.06
NKX3-1Q99801 AL133215.3-201ENST00000609801 448 ntBASIC2.2□□□□□ -2.06
NKX3-1Q99801 AL161423.1-201ENST00000613700 262 ntBASIC2.2□□□□□ -2.06
NKX3-1Q99801 MIR6128-201ENST00000615528 109 ntBASIC2.2□□□□□ -2.06
NKX3-1Q99801 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.2□□□□□ -2.06
NKX3-1Q99801 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
NKX3-1Q99801 AC010329.5-201ENST00000623497 2174 ntBASIC2.2□□□□□ -2.06
NKX3-1Q99801 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.19□□□□□ -2.06
NKX3-1Q99801 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.19□□□□□ -2.06
NKX3-1Q99801 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.19□□□□□ -2.06
NKX3-1Q99801 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.19□□□□□ -2.06
NKX3-1Q99801 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
NKX3-1Q99801 SNORD62.1-201ENST00000362541 86 ntBASIC2.19□□□□□ -2.06
NKX3-1Q99801 RNU6-859P-201ENST00000362728 107 ntBASIC2.19□□□□□ -2.06
NKX3-1Q99801 RNU6-790P-201ENST00000384479 105 ntBASIC2.19□□□□□ -2.06
NKX3-1Q99801 RNU1-57P-201ENST00000384491 166 ntBASIC2.19□□□□□ -2.06
NKX3-1Q99801 RNU6-1222P-201ENST00000384615 107 ntBASIC2.19□□□□□ -2.06
NKX3-1Q99801 MIR521-1-201ENST00000384902 87 ntBASIC2.19□□□□□ -2.06
NKX3-1Q99801 AL360182.1-201ENST00000397433 468 ntBASIC2.19□□□□□ -2.06
NKX3-1Q99801 AP000275.1-201ENST00000411943 390 ntBASIC2.19□□□□□ -2.06
NKX3-1Q99801 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.19□□□□□ -2.06
NKX3-1Q99801 RPS3AP52-201ENST00000435639 297 ntBASIC2.19□□□□□ -2.06
NKX3-1Q99801 AL445687.1-201ENST00000439946 251 ntBASIC2.19□□□□□ -2.06
NKX3-1Q99801 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.19□□□□□ -2.06
NKX3-1Q99801 PCMTD1P1-201ENST00000455560 355 ntBASIC2.19□□□□□ -2.06
NKX3-1Q99801 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.19□□□□□ -2.06
NKX3-1Q99801 RPL22P13-201ENST00000493291 347 ntBASIC2.19□□□□□ -2.06
NKX3-1Q99801 Y_RNA.691-201ENST00000516611 103 ntBASIC2.19□□□□□ -2.06
NKX3-1Q99801 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.19□□□□□ -2.06
NKX3-1Q99801 AC005668.1-201ENST00000571142 476 ntBASIC2.19□□□□□ -2.06
NKX3-1Q99801 MIR4513-201ENST00000581077 86 ntBASIC2.19□□□□□ -2.06
NKX3-1Q99801 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC2.19□□□□□ -2.06
NKX3-1Q99801 DLEU2_5.1-201ENST00000615567 84 ntBASIC2.19□□□□□ -2.06
NKX3-1Q99801 SNORA43.4-201ENST00000629559 138 ntBASIC2.19□□□□□ -2.06
NKX3-1Q99801 MTND4P27-201ENST00000450813 1354 ntBASIC2.19□□□□□ -2.06
NKX3-1Q99801 MTND4P12-201ENST00000498999 1377 ntBASIC2.19□□□□□ -2.06
NKX3-1Q99801 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.19□□□□□ -2.06
NKX3-1Q99801 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
NKX3-1Q99801 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
NKX3-1Q99801 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
NKX3-1Q99801 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.18□□□□□ -2.06
NKX3-1Q99801 OR56A5-201ENST00000340110 738 ntBASIC2.18□□□□□ -2.06
NKX3-1Q99801 RNU6-227P-201ENST00000362865 103 ntBASIC2.18□□□□□ -2.06
NKX3-1Q99801 RNA5SP393-201ENST00000363423 117 ntBASIC2.18□□□□□ -2.06
NKX3-1Q99801 SNORA36A-201ENST00000384221 132 ntBASIC2.18□□□□□ -2.06
NKX3-1Q99801 AC074085.1-201ENST00000413598 418 ntBASIC2.18□□□□□ -2.06
NKX3-1Q99801 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.18□□□□□ -2.06
NKX3-1Q99801 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.18□□□□□ -2.06
NKX3-1Q99801 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.18□□□□□ -2.06
NKX3-1Q99801 SUMO1P4-201ENST00000429430 302 ntBASIC2.18□□□□□ -2.06
NKX3-1Q99801 USP9YP30-201ENST00000430729 455 ntBASIC2.18□□□□□ -2.06
NKX3-1Q99801 RPS12P2-201ENST00000439728 269 ntBASIC2.18□□□□□ -2.06
NKX3-1Q99801 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.18□□□□□ -2.06
NKX3-1Q99801 AL353752.1-201ENST00000454946 260 ntBASIC2.18□□□□□ -2.06
NKX3-1Q99801 AL121594.1-201ENST00000475906 575 ntBASIC2.18□□□□□ -2.06
NKX3-1Q99801 RNU5F-2P-201ENST00000516066 82 ntBASIC2.18□□□□□ -2.06
NKX3-1Q99801 RNU2-53P-201ENST00000516257 147 ntBASIC2.18□□□□□ -2.06
NKX3-1Q99801 SNORA31.11-201ENST00000516528 139 ntBASIC2.18□□□□□ -2.06
NKX3-1Q99801 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC2.18□□□□□ -2.06
NKX3-1Q99801 AC105029.1-201ENST00000520250 669 ntBASIC2.18□□□□□ -2.06
NKX3-1Q99801 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.18□□□□□ -2.06
NKX3-1Q99801 HSPE1P4-201ENST00000550617 308 ntBASIC2.18□□□□□ -2.06
NKX3-1Q99801 POLR3GP2-201ENST00000588366 668 ntBASIC2.18□□□□□ -2.06
NKX3-1Q99801 RPL30P11-203ENST00000598995 310 ntBASIC2.18□□□□□ -2.06
NKX3-1Q99801 AC243960.4-201ENST00000600532 288 ntBASIC2.18□□□□□ -2.06
NKX3-1Q99801 AL356280.1-201ENST00000603614 379 ntBASIC2.18□□□□□ -2.06
NKX3-1Q99801 uc_338.5-201ENST00000611839 155 ntBASIC2.18□□□□□ -2.06
NKX3-1Q99801 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC2.18□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 139.2 ms