Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 SNORD109A-201ENST00000459128 67 ntBASIC3.27□□□□□ -1.89
NUP88Q99567 RNA5SP384-201ENST00000516615 116 ntBASIC3.27□□□□□ -1.89
NUP88Q99567 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC3.27□□□□□ -1.89
NUP88Q99567 AC115990.1-201ENST00000526957 301 ntBASIC3.27□□□□□ -1.89
NUP88Q99567 AC103810.1-201ENST00000579873 453 ntBASIC3.27□□□□□ -1.89
NUP88Q99567 AC005899.2-201ENST00000584353 90 ntBASIC3.27□□□□□ -1.89
NUP88Q99567 AL356157.2-201ENST00000605122 111 ntBASIC3.27□□□□□ -1.89
NUP88Q99567 AC080078.3-201ENST00000605407 463 ntBASIC3.27□□□□□ -1.89
NUP88Q99567 AL050343.2-201ENST00000607338 280 ntBASIC3.27□□□□□ -1.89
NUP88Q99567 AL136360.1-201ENST00000503377 1900 ntBASIC3.27□□□□□ -1.89
NUP88Q99567 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.26□□□□□ -1.89
NUP88Q99567 Y_RNA.146-201ENST00000363549 102 ntBASIC3.26□□□□□ -1.89
NUP88Q99567 SNORD32A-201ENST00000364805 84 ntBASIC3.26□□□□□ -1.89
NUP88Q99567 RNU1-57P-201ENST00000384491 166 ntBASIC3.26□□□□□ -1.89
NUP88Q99567 AL138827.1-201ENST00000402666 306 ntBASIC3.26□□□□□ -1.89
NUP88Q99567 RNA5SP184-201ENST00000411071 108 ntBASIC3.26□□□□□ -1.89
NUP88Q99567 AL513477.1-202ENST00000417061 214 ntBASIC3.26□□□□□ -1.89
NUP88Q99567 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC3.26□□□□□ -1.89
NUP88Q99567 AL353997.1-201ENST00000432936 108 ntBASIC3.26□□□□□ -1.89
NUP88Q99567 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC3.26□□□□□ -1.89
NUP88Q99567 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC3.26□□□□□ -1.89
NUP88Q99567 AC097473.1-201ENST00000508142 408 ntBASIC3.26□□□□□ -1.89
NUP88Q99567 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC3.26□□□□□ -1.89
NUP88Q99567 RNU6-1170P-201ENST00000515974 106 ntBASIC3.26□□□□□ -1.89
NUP88Q99567 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC3.26□□□□□ -1.89
NUP88Q99567 COX6CP5-201ENST00000527162 228 ntBASIC3.26□□□□□ -1.89
NUP88Q99567 AC079598.5-201ENST00000547460 117 ntBASIC3.26□□□□□ -1.89
NUP88Q99567 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC3.26□□□□□ -1.89
NUP88Q99567 MIR3162-201ENST00000581818 82 ntBASIC3.26□□□□□ -1.89
NUP88Q99567 MIR3199-1-201ENST00000582434 88 ntBASIC3.26□□□□□ -1.89
NUP88Q99567 MIR4506-201ENST00000584693 77 ntBASIC3.26□□□□□ -1.89
NUP88Q99567 AL670379.2-201ENST00000604983 252 ntBASIC3.26□□□□□ -1.89
NUP88Q99567 AC004832.5-201ENST00000608677 401 ntBASIC3.26□□□□□ -1.89
NUP88Q99567 AC098657.3-201ENST00000620434 263 ntBASIC3.26□□□□□ -1.89
NUP88Q99567 AL160413.1-201ENST00000622780 310 ntBASIC3.26□□□□□ -1.89
NUP88Q99567 AC022140.2-201ENST00000623500 188 ntBASIC3.26□□□□□ -1.89
NUP88Q99567 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
NUP88Q99567 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
NUP88Q99567 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.26□□□□□ -1.89
NUP88Q99567 AC233981.2-201ENST00000611524 1614 ntBASIC3.26□□□□□ -1.89
NUP88Q99567 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
NUP88Q99567 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
NUP88Q99567 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
NUP88Q99567 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.25□□□□□ -1.89
NUP88Q99567 Y_RNA.315-201ENST00000365117 102 ntBASIC3.25□□□□□ -1.89
NUP88Q99567 RNU6-596P-201ENST00000365395 98 ntBASIC3.25□□□□□ -1.89
NUP88Q99567 RNU6-890P-201ENST00000384121 107 ntBASIC3.25□□□□□ -1.89
NUP88Q99567 Y_RNA.533-201ENST00000384596 114 ntBASIC3.25□□□□□ -1.89
NUP88Q99567 MIR186-201ENST00000384988 86 ntBASIC3.25□□□□□ -1.89
NUP88Q99567 Y_RNA.579-201ENST00000390939 94 ntBASIC3.25□□□□□ -1.89
NUP88Q99567 RNU6-174P-201ENST00000410406 106 ntBASIC3.25□□□□□ -1.89
NUP88Q99567 AL590135.1-201ENST00000422215 156 ntBASIC3.25□□□□□ -1.89
NUP88Q99567 EIF4EP2-201ENST00000422816 654 ntBASIC3.25□□□□□ -1.89
NUP88Q99567 AC019205.3-201ENST00000424573 156 ntBASIC3.25□□□□□ -1.89
NUP88Q99567 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC3.25□□□□□ -1.89
NUP88Q99567 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC3.25□□□□□ -1.89
NUP88Q99567 AC016700.2-201ENST00000446011 156 ntBASIC3.25□□□□□ -1.89
NUP88Q99567 AL353705.4-201ENST00000449661 238 ntBASIC3.25□□□□□ -1.89
NUP88Q99567 AC015911.1-201ENST00000495111 156 ntBASIC3.25□□□□□ -1.89
NUP88Q99567 RNU6-264P-201ENST00000517134 104 ntBASIC3.25□□□□□ -1.89
NUP88Q99567 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC3.25□□□□□ -1.89
NUP88Q99567 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC3.25□□□□□ -1.89
NUP88Q99567 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.25□□□□□ -1.89
NUP88Q99567 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC3.25□□□□□ -1.89
NUP88Q99567 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC3.25□□□□□ -1.89
NUP88Q99567 7SK.7-201ENST00000603504 247 ntBASIC3.25□□□□□ -1.89
NUP88Q99567 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.25□□□□□ -1.89
NUP88Q99567 AC092593.1-201ENST00000515413 1815 ntBASIC3.25□□□□□ -1.89
NUP88Q99567 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC3.25□□□□□ -1.89
NUP88Q99567 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.25□□□□□ -1.89
NUP88Q99567 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC3.24□□□□□ -1.89
NUP88Q99567 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC3.24□□□□□ -1.89
NUP88Q99567 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.24□□□□□ -1.89
NUP88Q99567 MTND5P10-201ENST00000603719 1809 ntBASIC3.24□□□□□ -1.89
NUP88Q99567 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
NUP88Q99567 RNU1-35P-201ENST00000362782 153 ntBASIC3.24□□□□□ -1.89
NUP88Q99567 RNU6-655P-201ENST00000362858 107 ntBASIC3.24□□□□□ -1.89
NUP88Q99567 RNU6-529P-201ENST00000363383 104 ntBASIC3.24□□□□□ -1.89
NUP88Q99567 RNU4-56P-201ENST00000364700 142 ntBASIC3.24□□□□□ -1.89
NUP88Q99567 DYNLT3P1-201ENST00000378574 347 ntBASIC3.24□□□□□ -1.89
NUP88Q99567 RNU6-784P-201ENST00000384330 106 ntBASIC3.24□□□□□ -1.89
NUP88Q99567 AL451074.5-201ENST00000415894 435 ntBASIC3.24□□□□□ -1.89
NUP88Q99567 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC3.24□□□□□ -1.89
NUP88Q99567 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC3.24□□□□□ -1.89
NUP88Q99567 AC140059.1-201ENST00000489238 361 ntBASIC3.24□□□□□ -1.89
NUP88Q99567 AC093303.1-201ENST00000514549 295 ntBASIC3.24□□□□□ -1.89
NUP88Q99567 CBX3P8-201ENST00000532412 525 ntBASIC3.24□□□□□ -1.89
NUP88Q99567 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC3.24□□□□□ -1.89
NUP88Q99567 AC009318.2-201ENST00000610917 651 ntBASIC3.24□□□□□ -1.89
NUP88Q99567 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
NUP88Q99567 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
NUP88Q99567 AC092268.1-201ENST00000342691 405 ntBASIC3.23□□□□□ -1.89
NUP88Q99567 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
NUP88Q99567 RPL23AP95-201ENST00000426806 265 ntBASIC3.23□□□□□ -1.89
NUP88Q99567 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC3.23□□□□□ -1.89
NUP88Q99567 MIR2053-201ENST00000459295 91 ntBASIC3.23□□□□□ -1.89
NUP88Q99567 AC073901.1-201ENST00000462471 408 ntBASIC3.23□□□□□ -1.89
NUP88Q99567 AC005741.1-201ENST00000511094 432 ntBASIC3.23□□□□□ -1.89
NUP88Q99567 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC3.23□□□□□ -1.89
NUP88Q99567 RNA5SP385-201ENST00000515947 110 ntBASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 135 ms