Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 DEFB131E-202ENST00000602581 683 ntBASIC0.66□□□□□ -2.3
CCDC42Q96M95 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC0.66□□□□□ -2.3
CCDC42Q96M95 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC0.66□□□□□ -2.3
CCDC42Q96M95 AC126544.2-201ENST00000625174 749 ntBASIC0.66□□□□□ -2.3
CCDC42Q96M95 SNORA63.3-201ENST00000362682 132 ntBASIC0.65□□□□□ -2.31
CCDC42Q96M95 RNA5SP259-201ENST00000365541 109 ntBASIC0.65□□□□□ -2.31
CCDC42Q96M95 RNU6-723P-201ENST00000383973 107 ntBASIC0.65□□□□□ -2.31
CCDC42Q96M95 MIR578-201ENST00000384828 96 ntBASIC0.65□□□□□ -2.31
CCDC42Q96M95 RNU6-298P-201ENST00000390888 96 ntBASIC0.65□□□□□ -2.31
CCDC42Q96M95 RNU6-733P-201ENST00000410759 104 ntBASIC0.65□□□□□ -2.31
CCDC42Q96M95 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC0.65□□□□□ -2.31
CCDC42Q96M95 AL591043.1-201ENST00000432461 424 ntBASIC0.65□□□□□ -2.31
CCDC42Q96M95 GTF2IP13-201ENST00000438487 386 ntBASIC0.65□□□□□ -2.31
CCDC42Q96M95 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC0.65□□□□□ -2.31
CCDC42Q96M95 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC0.65□□□□□ -2.31
CCDC42Q96M95 KRTAP13-6P-201ENST00000508999 371 ntBASIC0.65□□□□□ -2.31
CCDC42Q96M95 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC0.65□□□□□ -2.31
CCDC42Q96M95 MIR3136-201ENST00000583498 78 ntBASIC0.65□□□□□ -2.31
CCDC42Q96M95 MIR4298-201ENST00000584380 73 ntBASIC0.65□□□□□ -2.31
CCDC42Q96M95 AC105129.3-201ENST00000605455 485 ntBASIC0.65□□□□□ -2.31
CCDC42Q96M95 AC108747.1-201ENST00000609508 535 ntBASIC0.65□□□□□ -2.31
CCDC42Q96M95 AC104073.3-201ENST00000610942 955 ntBASIC0.65□□□□□ -2.31
CCDC42Q96M95 AC092106.3-201ENST00000611308 722 ntBASIC0.65□□□□□ -2.31
CCDC42Q96M95 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC0.65□□□□□ -2.31
CCDC42Q96M95 AC006386.1-201ENST00000619436 415 ntBASIC0.65□□□□□ -2.31
CCDC42Q96M95 AC103706.2-201ENST00000638080 240 ntBASIC0.65□□□□□ -2.31
CCDC42Q96M95 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.64□□□□□ -2.31
CCDC42Q96M95 RNY4P24-201ENST00000362735 96 ntBASIC0.64□□□□□ -2.31
CCDC42Q96M95 MIR92A1-201ENST00000385233 78 ntBASIC0.64□□□□□ -2.31
CCDC42Q96M95 AL117342.1-201ENST00000404861 406 ntBASIC0.64□□□□□ -2.31
CCDC42Q96M95 MTCYBP2-201ENST00000407745 171 ntBASIC0.64□□□□□ -2.31
CCDC42Q96M95 AP000275.1-201ENST00000411943 390 ntBASIC0.64□□□□□ -2.31
CCDC42Q96M95 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC0.64□□□□□ -2.31
CCDC42Q96M95 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC0.64□□□□□ -2.31
CCDC42Q96M95 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC0.64□□□□□ -2.31
CCDC42Q96M95 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC0.64□□□□□ -2.31
CCDC42Q96M95 AC073910.1-201ENST00000445047 438 ntBASIC0.64□□□□□ -2.31
CCDC42Q96M95 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC0.64□□□□□ -2.31
CCDC42Q96M95 PDCD5P2-201ENST00000507570 312 ntBASIC0.64□□□□□ -2.31
CCDC42Q96M95 AC034244.1-201ENST00000507687 207 ntBASIC0.64□□□□□ -2.31
CCDC42Q96M95 AC104806.1-201ENST00000508720 308 ntBASIC0.64□□□□□ -2.31
CCDC42Q96M95 DEFB108E-201ENST00000524692 240 ntBASIC0.64□□□□□ -2.31
CCDC42Q96M95 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC0.64□□□□□ -2.31
CCDC42Q96M95 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC0.64□□□□□ -2.31
CCDC42Q96M95 MTND4LP25-201ENST00000570218 163 ntBASIC0.64□□□□□ -2.31
CCDC42Q96M95 MIR4709-201ENST00000577272 72 ntBASIC0.64□□□□□ -2.31
CCDC42Q96M95 AC016727.1-205ENST00000605437 569 ntBASIC0.64□□□□□ -2.31
CCDC42Q96M95 TEX41-243ENST00000614173 190 ntTSL 5 BASIC0.64□□□□□ -2.31
CCDC42Q96M95 AP000943.4-201ENST00000622912 357 ntBASIC0.64□□□□□ -2.31
CCDC42Q96M95 SNORD98-201ENST00000636377 67 ntBASIC0.64□□□□□ -2.31
CCDC42Q96M95 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC0.64□□□□□ -2.31
CCDC42Q96M95 RNU6-1123P-201ENST00000362347 106 ntBASIC0.63□□□□□ -2.31
CCDC42Q96M95 SNORD31B-201ENST00000364977 69 ntBASIC0.63□□□□□ -2.31
CCDC42Q96M95 MIR508-201ENST00000384857 115 ntBASIC0.63□□□□□ -2.31
CCDC42Q96M95 AC019070.1-201ENST00000415008 1024 ntBASIC0.63□□□□□ -2.31
CCDC42Q96M95 AL031779.1-201ENST00000415663 330 ntBASIC0.63□□□□□ -2.31
CCDC42Q96M95 TRIM60P10Y-201ENST00000425589 751 ntBASIC0.63□□□□□ -2.31
CCDC42Q96M95 USP9YP14-201ENST00000430663 563 ntBASIC0.63□□□□□ -2.31
CCDC42Q96M95 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC0.63□□□□□ -2.31
CCDC42Q96M95 AC016925.1-201ENST00000458303 298 ntBASIC0.63□□□□□ -2.31
CCDC42Q96M95 SNORD124-201ENST00000459577 104 ntBASIC0.63□□□□□ -2.31
CCDC42Q96M95 AC074344.1-201ENST00000512823 224 ntBASIC0.63□□□□□ -2.31
CCDC42Q96M95 AC008751.2-201ENST00000597885 980 ntBASIC0.63□□□□□ -2.31
CCDC42Q96M95 AL121895.2-201ENST00000619558 447 ntBASIC0.63□□□□□ -2.31
CCDC42Q96M95 AL359757.2-201ENST00000624309 274 ntBASIC0.63□□□□□ -2.31
CCDC42Q96M95 Y_RNA.46-201ENST00000362695 102 ntBASIC0.62□□□□□ -2.31
CCDC42Q96M95 RNU5E-7P-201ENST00000365290 117 ntBASIC0.62□□□□□ -2.31
CCDC42Q96M95 Y_RNA.472-201ENST00000384322 102 ntBASIC0.62□□□□□ -2.31
CCDC42Q96M95 RNU6-321P-201ENST00000410912 106 ntBASIC0.62□□□□□ -2.31
CCDC42Q96M95 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.62□□□□□ -2.31
CCDC42Q96M95 AC006366.1-201ENST00000422002 759 ntBASIC0.62□□□□□ -2.31
CCDC42Q96M95 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC0.62□□□□□ -2.31
CCDC42Q96M95 MTND5P2-201ENST00000442927 1142 ntBASIC0.62□□□□□ -2.31
CCDC42Q96M95 ZNF736P5Y-201ENST00000451173 805 ntBASIC0.62□□□□□ -2.31
CCDC42Q96M95 AC007395.1-201ENST00000451333 677 ntBASIC0.62□□□□□ -2.31
CCDC42Q96M95 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC0.62□□□□□ -2.31
CCDC42Q96M95 AC010531.2-201ENST00000465012 153 ntBASIC0.62□□□□□ -2.31
CCDC42Q96M95 AC116353.3-201ENST00000511215 249 ntBASIC0.62□□□□□ -2.31
CCDC42Q96M95 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC0.62□□□□□ -2.31
CCDC42Q96M95 RNA5SP168-201ENST00000516642 112 ntBASIC0.62□□□□□ -2.31
CCDC42Q96M95 AC013828.2-201ENST00000532487 235 ntBASIC0.62□□□□□ -2.31
CCDC42Q96M95 AC004812.1-201ENST00000540773 146 ntBASIC0.62□□□□□ -2.31
CCDC42Q96M95 AC011604.1-201ENST00000545978 196 ntBASIC0.62□□□□□ -2.31
CCDC42Q96M95 AC109446.1-201ENST00000566172 220 ntBASIC0.62□□□□□ -2.31
CCDC42Q96M95 AC110760.3-201ENST00000598794 467 ntBASIC0.62□□□□□ -2.31
CCDC42Q96M95 AL356596.1-201ENST00000624230 379 ntBASIC0.62□□□□□ -2.31
CCDC42Q96M95 AC009541.1-201ENST00000438279 2662 ntBASIC0.62□□□□□ -2.31
CCDC42Q96M95 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.61□□□□□ -2.31
CCDC42Q96M95 RNU4-79P-201ENST00000362764 141 ntBASIC0.61□□□□□ -2.31
CCDC42Q96M95 SNORA4.2-201ENST00000365313 147 ntBASIC0.61□□□□□ -2.31
CCDC42Q96M95 SNORD12-201ENST00000391002 90 ntBASIC0.61□□□□□ -2.31
CCDC42Q96M95 AC063976.4-201ENST00000421971 163 ntBASIC0.61□□□□□ -2.31
CCDC42Q96M95 RAB28P5-201ENST00000427490 651 ntBASIC0.61□□□□□ -2.31
CCDC42Q96M95 MTND1P32-201ENST00000433043 938 ntBASIC0.61□□□□□ -2.31
CCDC42Q96M95 AL360271.2-201ENST00000447710 161 ntBASIC0.61□□□□□ -2.31
CCDC42Q96M95 RPL39P38-201ENST00000467018 153 ntBASIC0.61□□□□□ -2.31
CCDC42Q96M95 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC0.61□□□□□ -2.31
CCDC42Q96M95 SNORA31.4-201ENST00000516049 129 ntBASIC0.61□□□□□ -2.31
CCDC42Q96M95 RNU1-86P-201ENST00000516108 154 ntBASIC0.61□□□□□ -2.31
CCDC42Q96M95 RNU1-107P-201ENST00000516617 154 ntBASIC0.61□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 93.5 ms