| PAX8 | Q06710 | RNU6-1153P-201 | ENST00000516760 | 105 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | RNU6-612P-201 | ENST00000516909 | 102 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | Y_RNA.708-201 | ENST00000516950 | 96 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | SNORA31.18-201 | ENST00000517043 | 134 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | RN7SKP40-201 | ENST00000517211 | 242 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | AC022690.2-201 | ENST00000525673 | 589 nt | TSL 3 BASIC | 2.14 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | EBAG9-207 | ENST00000531677 | 777 nt | TSL 1 (best) BASIC | 2.14 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | AC004486.1-201 | ENST00000546846 | 233 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | MIR5690-201 | ENST00000583739 | 73 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | MIR4635-201 | ENST00000583759 | 79 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | AC011494.1-201 | ENST00000596454 | 237 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | AL391813.1-201 | ENST00000603098 | 260 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | AL160413.1-201 | ENST00000622780 | 310 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | AC090574.1-201 | ENST00000623186 | 233 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | AL669831.3-213 | ENST00000636676 | 183 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | AC241585.2-209 | ENST00000638217 | 143 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | Z82195.2-201 | ENST00000612348 | 18351 nt | BASIC | 2.14 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | BCHE-201 | ENST00000264381 | 2454 nt | APPRIS P1 TSL 1 (best) BASIC | 2.14 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | LINC01592-202 | ENST00000518540 | 2367 nt | TSL 2 BASIC | 2.14 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | OR2J3-203 | ENST00000641960 | 3342 nt | APPRIS P1 BASIC | 2.14 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | MCMDC2-201 | ENST00000313616 | 2043 nt | TSL 2 BASIC | 2.13 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | AKAP9-203 | ENST00000359028 | 12247 nt | APPRIS ALT2 TSL 5 BASIC | 2.13 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | SEMG1-201 | ENST00000372781 | 1662 nt | APPRIS P1 TSL 1 (best) BASIC | 2.13 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | RBBP8P1-201 | ENST00000449447 | 1844 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | SHOC2-201 | ENST00000265277 | 3691 nt | TSL 2 BASIC | 2.13 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | U8.8-201 | ENST00000365399 | 135 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | RNU6-43P-201 | ENST00000384302 | 107 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | RNU6-933P-201 | ENST00000384424 | 107 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | MIR767-201 | ENST00000390228 | 109 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | Y_RNA.579-201 | ENST00000390939 | 94 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | MTCYBP4-201 | ENST00000401524 | 249 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | AC096649.2-201 | ENST00000416186 | 393 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | MTCO2P27-201 | ENST00000420740 | 428 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | AC006159.2-201 | ENST00000421965 | 692 nt | TSL 2 BASIC | 2.13 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | AL591043.1-201 | ENST00000432461 | 424 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | SIRPG-AS1-201 | ENST00000437384 | 410 nt | TSL 3 BASIC | 2.13 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | AC011816.1-201 | ENST00000441346 | 546 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | AC007969.2-201 | ENST00000441891 | 191 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | MAMDC2-AS1-205 | ENST00000451488 | 317 nt | TSL 3 BASIC | 2.13 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | RPL30P15-201 | ENST00000457129 | 321 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | RNU7-152P-201 | ENST00000458982 | 64 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | AC008571.1-201 | ENST00000467232 | 300 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | RPS27AP9-201 | ENST00000477681 | 438 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | AC005741.1-201 | ENST00000511094 | 432 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | RNU6ATAC13P-201 | ENST00000516152 | 131 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | RNA5SP384-201 | ENST00000516615 | 116 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | RNU6-826P-201 | ENST00000516827 | 104 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | AP005902.1-201 | ENST00000521358 | 186 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | AC010186.2-204 | ENST00000537668 | 439 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | BNIP3P16-201 | ENST00000589779 | 534 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | VN1R107P-201 | ENST00000601784 | 209 nt | BASIC | 2.13 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | AC023490.3-201 | ENST00000621762 | 358 nt | TSL 3 BASIC | 2.13 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | AP000550.4-201 | ENST00000639507 | 358 nt | TSL 3 BASIC | 2.13 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | MYSM1-208 | ENST00000622766 | 6020 nt | TSL 1 (best) BASIC | 2.13 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | SLCO1B3-201 | ENST00000261196 | 2840 nt | APPRIS P1 TSL 1 (best) BASIC | 2.13 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | ST7-AS2-206 | ENST00000456577 | 1351 nt | TSL 1 (best) BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | ZNF470-202 | ENST00000391709 | 6601 nt | APPRIS P1 TSL 5 BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | PIK3CA-201 | ENST00000263967 | 9093 nt | APPRIS P1 TSL 2 BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | RNU1-105P-201 | ENST00000363470 | 161 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | SNORA67.4-201 | ENST00000384688 | 142 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | RNU6-331P-201 | ENST00000384724 | 107 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | MIR521-1-201 | ENST00000384902 | 87 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | MIR27B-201 | ENST00000385129 | 97 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | AL133475.1-201 | ENST00000404414 | 305 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | RNU6-174P-201 | ENST00000410406 | 106 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | RNU6-1140P-201 | ENST00000410517 | 106 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | AC007566.1-201 | ENST00000427458 | 643 nt | TSL 5 BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | DAP3P1-201 | ENST00000441522 | 278 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | AL031659.1-201 | ENST00000447075 | 539 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | EEF1B2P7-201 | ENST00000451177 | 676 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | ELOCP24-201 | ENST00000456370 | 334 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | Y_RNA.653-201 | ENST00000459091 | 95 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | U8.21-201 | ENST00000459536 | 136 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | AC133134.1-201 | ENST00000466800 | 359 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | RN7SL429P-201 | ENST00000479090 | 223 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | RN7SL489P-201 | ENST00000486185 | 223 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | RN7SL327P-201 | ENST00000488659 | 223 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | AC091976.1-202 | ENST00000509211 | 630 nt | TSL 3 BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | RNU5F-8P-201 | ENST00000515941 | 111 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | Y_RNA.701-201 | ENST00000516812 | 110 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | POC1B-211 | ENST00000549504 | 581 nt | TSL 5 BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | MIR4435-1-201 | ENST00000582552 | 80 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | MIR3670-2-201 | ENST00000582974 | 65 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | MIR3670-1-201 | ENST00000584160 | 65 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | MIR3670-3-201 | ENST00000584855 | 65 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | AC044792.1-201 | ENST00000593294 | 196 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | AL356055.1-201 | ENST00000602528 | 446 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | AP001836.1-201 | ENST00000604675 | 523 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | MIR3670-4-201 | ENST00000612260 | 65 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | PISRT1.1-201 | ENST00000616930 | 107 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | RN7SL853P-201 | ENST00000617250 | 223 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | SMIM2-AS1-204 | ENST00000619472 | 746 nt | TSL 3 BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | HOXA11-AS1_4.1-201 | ENST00000620901 | 233 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | LINC01002-202 | ENST00000631412 | 459 nt | TSL 5 BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | MIR3529-201 | ENST00000637713 | 78 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | DYNC2H1-202 | ENST00000375735 | 13678 nt | APPRIS ALT1 TSL 1 (best) BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | ZNF736P3Y-201 | ENST00000428264 | 1465 nt | BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | QSER1-204 | ENST00000527788 | 5052 nt | TSL 2 BASIC | 2.12 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | CACNB4-228 | ENST00000636598 | 7808 nt | TSL 5 BASIC | 2.11 | □□□□□ -2.07 | | |
| PAX8 | Q06710 | LMBRD1-201 | ENST00000370570 | 2099 nt | TSL 1 (best) BASIC | 2.11 | □□□□□ -2.07 | | |