Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 HMGB1P24-202ENST00000615653 685 ntBASIC3.29□□□□□ -1.88
SMARCA1P28370 AC091925.1-201ENST00000623204 462 ntBASIC3.29□□□□□ -1.88
SMARCA1P28370 AC004944.1-201ENST00000517807 3059 ntBASIC3.29□□□□□ -1.88
SMARCA1P28370 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
SMARCA1P28370 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
SMARCA1P28370 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
SMARCA1P28370 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.28□□□□□ -1.88
SMARCA1P28370 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.28□□□□□ -1.88
SMARCA1P28370 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
SMARCA1P28370 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
SMARCA1P28370 AC138915.1-201ENST00000565427 1685 ntBASIC3.28□□□□□ -1.88
SMARCA1P28370 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.28□□□□□ -1.88
SMARCA1P28370 Y_RNA.123-201ENST00000363338 102 ntBASIC3.28□□□□□ -1.88
SMARCA1P28370 SNORA80A-201ENST00000363922 136 ntBASIC3.28□□□□□ -1.88
SMARCA1P28370 Y_RNA.252-201ENST00000364556 101 ntBASIC3.28□□□□□ -1.88
SMARCA1P28370 SNORD21-201ENST00000383953 95 ntBASIC3.28□□□□□ -1.88
SMARCA1P28370 RNU6-784P-201ENST00000384330 106 ntBASIC3.28□□□□□ -1.88
SMARCA1P28370 NUP35P1-201ENST00000422734 947 ntBASIC3.28□□□□□ -1.88
SMARCA1P28370 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC3.28□□□□□ -1.88
SMARCA1P28370 AC091874.1-201ENST00000511402 339 ntBASIC3.28□□□□□ -1.88
SMARCA1P28370 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.28□□□□□ -1.88
SMARCA1P28370 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.28□□□□□ -1.88
SMARCA1P28370 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC3.28□□□□□ -1.88
SMARCA1P28370 ELOCP29-201ENST00000588193 334 ntBASIC3.28□□□□□ -1.88
SMARCA1P28370 AC019159.1-201ENST00000605094 187 ntBASIC3.28□□□□□ -1.88
SMARCA1P28370 AL033523.1-201ENST00000605153 153 ntBASIC3.28□□□□□ -1.88
SMARCA1P28370 AC009318.2-201ENST00000610917 651 ntBASIC3.28□□□□□ -1.88
SMARCA1P28370 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
SMARCA1P28370 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.28□□□□□ -1.89
SMARCA1P28370 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
SMARCA1P28370 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
SMARCA1P28370 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC3.27□□□□□ -1.89
SMARCA1P28370 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC3.27□□□□□ -1.89
SMARCA1P28370 RNY1P16-201ENST00000363063 111 ntBASIC3.27□□□□□ -1.89
SMARCA1P28370 Y_RNA.162-201ENST00000363683 102 ntBASIC3.27□□□□□ -1.89
SMARCA1P28370 SNORD32A-201ENST00000364805 84 ntBASIC3.27□□□□□ -1.89
SMARCA1P28370 SNORA33.2-201ENST00000365413 134 ntBASIC3.27□□□□□ -1.89
SMARCA1P28370 AL512633.1-201ENST00000399931 655 ntBASIC3.27□□□□□ -1.89
SMARCA1P28370 RNA5SP492-201ENST00000411330 114 ntBASIC3.27□□□□□ -1.89
SMARCA1P28370 AL451074.5-201ENST00000415894 435 ntBASIC3.27□□□□□ -1.89
SMARCA1P28370 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC3.27□□□□□ -1.89
SMARCA1P28370 AC004383.1-201ENST00000438135 289 ntBASIC3.27□□□□□ -1.89
SMARCA1P28370 AC124916.1-201ENST00000444020 547 ntBASIC3.27□□□□□ -1.89
SMARCA1P28370 OSTCP8-201ENST00000445117 448 ntBASIC3.27□□□□□ -1.89
SMARCA1P28370 Z96811.1-201ENST00000445880 108 ntBASIC3.27□□□□□ -1.89
SMARCA1P28370 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC3.27□□□□□ -1.89
SMARCA1P28370 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC3.27□□□□□ -1.89
SMARCA1P28370 SEM1P1-201ENST00000506694 209 ntBASIC3.27□□□□□ -1.89
SMARCA1P28370 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC3.27□□□□□ -1.89
SMARCA1P28370 Y_RNA.661-201ENST00000516003 99 ntBASIC3.27□□□□□ -1.89
SMARCA1P28370 RNU6-264P-201ENST00000517134 104 ntBASIC3.27□□□□□ -1.89
SMARCA1P28370 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
SMARCA1P28370 SUB1P3-201ENST00000564581 315 ntBASIC3.27□□□□□ -1.89
SMARCA1P28370 AC010620.2-201ENST00000600135 313 ntBASIC3.27□□□□□ -1.89
SMARCA1P28370 AC007485.1-201ENST00000616755 206 ntBASIC3.27□□□□□ -1.89
SMARCA1P28370 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC3.27□□□□□ -1.89
SMARCA1P28370 AC024581.2-201ENST00000619986 252 ntBASIC3.27□□□□□ -1.89
SMARCA1P28370 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC3.27□□□□□ -1.89
SMARCA1P28370 MIR3529-201ENST00000637713 78 ntBASIC3.27□□□□□ -1.89
SMARCA1P28370 RBBP8P1-201ENST00000449447 1844 ntBASIC3.27□□□□□ -1.89
SMARCA1P28370 MTND5P9-201ENST00000503854 1755 ntBASIC3.27□□□□□ -1.89
SMARCA1P28370 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
SMARCA1P28370 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
SMARCA1P28370 MIR26A1-201ENST00000362205 77 ntBASIC3.26□□□□□ -1.89
SMARCA1P28370 Y_RNA.148-201ENST00000363557 117 ntBASIC3.26□□□□□ -1.89
SMARCA1P28370 RNU6-595P-201ENST00000363944 107 ntBASIC3.26□□□□□ -1.89
SMARCA1P28370 RNU6-99P-201ENST00000364721 107 ntBASIC3.26□□□□□ -1.89
SMARCA1P28370 SNORA18.3-201ENST00000384122 132 ntBASIC3.26□□□□□ -1.89
SMARCA1P28370 RNU6-19P-201ENST00000384718 107 ntBASIC3.26□□□□□ -1.89
SMARCA1P28370 MIR544A-201ENST00000384855 91 ntBASIC3.26□□□□□ -1.89
SMARCA1P28370 BTF3L4P2-201ENST00000392798 346 ntBASIC3.26□□□□□ -1.89
SMARCA1P28370 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC3.26□□□□□ -1.89
SMARCA1P28370 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC3.26□□□□□ -1.89
SMARCA1P28370 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC3.26□□□□□ -1.89
SMARCA1P28370 MRPS18CP6-201ENST00000423587 223 ntBASIC3.26□□□□□ -1.89
SMARCA1P28370 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC3.26□□□□□ -1.89
SMARCA1P28370 AP004217.1-201ENST00000480579 346 ntBASIC3.26□□□□□ -1.89
SMARCA1P28370 RPL17P19-201ENST00000489069 552 ntBASIC3.26□□□□□ -1.89
SMARCA1P28370 MRPS36P2-201ENST00000512569 299 ntBASIC3.26□□□□□ -1.89
SMARCA1P28370 RNU5F-8P-201ENST00000515941 111 ntBASIC3.26□□□□□ -1.89
SMARCA1P28370 RN7SKP295-201ENST00000517264 153 ntBASIC3.26□□□□□ -1.89
SMARCA1P28370 AL391813.1-201ENST00000603098 260 ntBASIC3.26□□□□□ -1.89
SMARCA1P28370 AC016925.2-201ENST00000605108 242 ntBASIC3.26□□□□□ -1.89
SMARCA1P28370 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC3.26□□□□□ -1.89
SMARCA1P28370 AL137790.1-201ENST00000634283 177 ntBASIC3.26□□□□□ -1.89
SMARCA1P28370 ZNF299P-201ENST00000406845 1804 ntBASIC3.26□□□□□ -1.89
SMARCA1P28370 AC092593.1-201ENST00000515413 1815 ntBASIC3.26□□□□□ -1.89
SMARCA1P28370 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
SMARCA1P28370 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
SMARCA1P28370 AC009541.1-201ENST00000438279 2662 ntBASIC3.25□□□□□ -1.89
SMARCA1P28370 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
SMARCA1P28370 RNU6-622P-201ENST00000384272 103 ntBASIC3.25□□□□□ -1.89
SMARCA1P28370 RNY1P14-201ENST00000384426 108 ntBASIC3.25□□□□□ -1.89
SMARCA1P28370 MIR9-1-201ENST00000385198 89 ntBASIC3.25□□□□□ -1.89
SMARCA1P28370 snosnR66.1-201ENST00000391095 99 ntBASIC3.25□□□□□ -1.89
SMARCA1P28370 AL133475.1-201ENST00000404414 305 ntBASIC3.25□□□□□ -1.89
SMARCA1P28370 RNU6-1245P-201ENST00000411130 106 ntBASIC3.25□□□□□ -1.89
SMARCA1P28370 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC3.25□□□□□ -1.89
SMARCA1P28370 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC3.25□□□□□ -1.89
SMARCA1P28370 BMS1P22-201ENST00000414726 313 ntBASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 143.9 ms