Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AC093852.1-201ENST00000503587 266 ntBASIC3.13□□□□□ -1.91
VPS4BO75351 AC021146.2-201ENST00000504736 556 ntBASIC3.13□□□□□ -1.91
VPS4BO75351 RNA5SP380-201ENST00000517190 98 ntBASIC3.13□□□□□ -1.91
VPS4BO75351 Y_RNA.721-201ENST00000517207 102 ntBASIC3.13□□□□□ -1.91
VPS4BO75351 AC090897.2-201ENST00000581715 130 ntBASIC3.13□□□□□ -1.91
VPS4BO75351 AC104984.5-201ENST00000586878 94 ntBASIC3.13□□□□□ -1.91
VPS4BO75351 B3GNTL1P2-201ENST00000603673 288 ntBASIC3.13□□□□□ -1.91
VPS4BO75351 RNU6-91P-201ENST00000607774 107 ntBASIC3.13□□□□□ -1.91
VPS4BO75351 AL138825.1-201ENST00000618587 192 ntBASIC3.13□□□□□ -1.91
VPS4BO75351 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.13□□□□□ -1.91
VPS4BO75351 AC009541.1-201ENST00000438279 2662 ntBASIC3.13□□□□□ -1.91
VPS4BO75351 AC091812.1-201ENST00000432235 1948 ntBASIC3.13□□□□□ -1.91
VPS4BO75351 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
VPS4BO75351 RNU6-858P-201ENST00000362436 107 ntBASIC3.12□□□□□ -1.91
VPS4BO75351 RNU6-1141P-201ENST00000364520 107 ntBASIC3.12□□□□□ -1.91
VPS4BO75351 RNU6-1286P-201ENST00000383871 107 ntBASIC3.12□□□□□ -1.91
VPS4BO75351 Y_RNA.455-201ENST00000384230 98 ntBASIC3.12□□□□□ -1.91
VPS4BO75351 RNU6-748P-201ENST00000384648 107 ntBASIC3.12□□□□□ -1.91
VPS4BO75351 SNORA46-201ENST00000384762 135 ntBASIC3.12□□□□□ -1.91
VPS4BO75351 MIR625-201ENST00000385047 85 ntBASIC3.12□□□□□ -1.91
VPS4BO75351 SNORA12.2-201ENST00000391040 156 ntBASIC3.12□□□□□ -1.91
VPS4BO75351 RNU6-700P-201ENST00000391043 107 ntBASIC3.12□□□□□ -1.91
VPS4BO75351 RN7SKP61-201ENST00000410642 295 ntBASIC3.12□□□□□ -1.91
VPS4BO75351 RNU4-47P-201ENST00000410876 114 ntBASIC3.12□□□□□ -1.91
VPS4BO75351 AL358453.1-201ENST00000422522 250 ntBASIC3.12□□□□□ -1.91
VPS4BO75351 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.12□□□□□ -1.91
VPS4BO75351 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS4BO75351 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS4BO75351 RPS26P21-201ENST00000475397 348 ntBASIC3.12□□□□□ -1.91
VPS4BO75351 AC091874.1-201ENST00000511402 339 ntBASIC3.12□□□□□ -1.91
VPS4BO75351 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC3.12□□□□□ -1.91
VPS4BO75351 RNU5F-8P-201ENST00000515941 111 ntBASIC3.12□□□□□ -1.91
VPS4BO75351 RNU6-911P-201ENST00000516523 104 ntBASIC3.12□□□□□ -1.91
VPS4BO75351 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.12□□□□□ -1.91
VPS4BO75351 MIR5571-201ENST00000577998 113 ntBASIC3.12□□□□□ -1.91
VPS4BO75351 AC113195.1-201ENST00000579952 141 ntBASIC3.12□□□□□ -1.91
VPS4BO75351 AL391813.1-201ENST00000603098 260 ntBASIC3.12□□□□□ -1.91
VPS4BO75351 AC016727.2-201ENST00000603988 621 ntBASIC3.12□□□□□ -1.91
VPS4BO75351 RPL23AP88-201ENST00000605759 454 ntBASIC3.12□□□□□ -1.91
VPS4BO75351 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.12□□□□□ -1.91
VPS4BO75351 SCARNA4-201ENST00000629045 128 ntBASIC3.12□□□□□ -1.91
VPS4BO75351 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
VPS4BO75351 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
VPS4BO75351 AC010889.1-201ENST00000566193 2666 ntBASIC3.11□□□□□ -1.91
VPS4BO75351 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
VPS4BO75351 RNU6-874P-201ENST00000362390 105 ntBASIC3.11□□□□□ -1.91
VPS4BO75351 RNU6-1285P-201ENST00000363480 105 ntBASIC3.11□□□□□ -1.91
VPS4BO75351 Y_RNA.485-201ENST00000384395 102 ntBASIC3.11□□□□□ -1.91
VPS4BO75351 Y_RNA.527-201ENST00000384573 102 ntBASIC3.11□□□□□ -1.91
VPS4BO75351 RNU6-1222P-201ENST00000384615 107 ntBASIC3.11□□□□□ -1.91
VPS4BO75351 RNU1-101P-201ENST00000391171 127 ntBASIC3.11□□□□□ -1.91
VPS4BO75351 AC007098.1-201ENST00000420122 367 ntBASIC3.11□□□□□ -1.91
VPS4BO75351 PTGES3P4-201ENST00000426243 356 ntBASIC3.11□□□□□ -1.91
VPS4BO75351 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.11□□□□□ -1.91
VPS4BO75351 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC3.11□□□□□ -1.91
VPS4BO75351 RPL23AP75-201ENST00000491601 451 ntBASIC3.11□□□□□ -1.91
VPS4BO75351 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.11□□□□□ -1.91
VPS4BO75351 AKIRIN2P1-201ENST00000505898 352 ntBASIC3.11□□□□□ -1.91
VPS4BO75351 AC144568.1-201ENST00000520139 137 ntBASIC3.11□□□□□ -1.91
VPS4BO75351 AC022616.4-201ENST00000522985 181 ntBASIC3.11□□□□□ -1.91
VPS4BO75351 MRPS36P4-201ENST00000534436 298 ntBASIC3.11□□□□□ -1.91
VPS4BO75351 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC3.11□□□□□ -1.91
VPS4BO75351 MIR5188-201ENST00000583467 113 ntBASIC3.11□□□□□ -1.91
VPS4BO75351 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.11□□□□□ -1.91
VPS4BO75351 AC073657.2-201ENST00000605661 303 ntBASIC3.11□□□□□ -1.91
VPS4BO75351 AC004832.5-201ENST00000608677 401 ntBASIC3.11□□□□□ -1.91
VPS4BO75351 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC3.11□□□□□ -1.91
VPS4BO75351 MIR1244-1-201ENST00000612829 85 ntBASIC3.11□□□□□ -1.91
VPS4BO75351 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.11□□□□□ -1.91
VPS4BO75351 AL078596.1-201ENST00000624856 447 ntBASIC3.11□□□□□ -1.91
VPS4BO75351 MIR1244-3-201ENST00000635744 85 ntBASIC3.11□□□□□ -1.91
VPS4BO75351 MIR1244-2-201ENST00000636449 85 ntBASIC3.11□□□□□ -1.91
VPS4BO75351 MIR1244-4-202ENST00000636813 85 ntBASIC3.11□□□□□ -1.91
VPS4BO75351 RBBP8P1-201ENST00000449447 1844 ntBASIC3.11□□□□□ -1.91
VPS4BO75351 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.11□□□□□ -1.91
VPS4BO75351 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC3.11□□□□□ -1.91
VPS4BO75351 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
VPS4BO75351 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.1□□□□□ -1.91
VPS4BO75351 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
VPS4BO75351 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
VPS4BO75351 RNU5B-2P-201ENST00000363036 113 ntBASIC3.1□□□□□ -1.91
VPS4BO75351 SNORD115-32-201ENST00000364079 82 ntBASIC3.1□□□□□ -1.91
VPS4BO75351 RNU4-9P-201ENST00000364951 139 ntBASIC3.1□□□□□ -1.91
VPS4BO75351 MIR544A-201ENST00000384855 91 ntBASIC3.1□□□□□ -1.91
VPS4BO75351 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
VPS4BO75351 RNU6-823P-201ENST00000391042 103 ntBASIC3.1□□□□□ -1.91
VPS4BO75351 SNORA26.3-201ENST00000391119 136 ntBASIC3.1□□□□□ -1.91
VPS4BO75351 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
VPS4BO75351 AL356057.3-201ENST00000402607 340 ntBASIC3.1□□□□□ -1.91
VPS4BO75351 RNU2-49P-201ENST00000410666 184 ntBASIC3.1□□□□□ -1.91
VPS4BO75351 HMGB3P2-201ENST00000411913 584 ntBASIC3.1□□□□□ -1.91
VPS4BO75351 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS4BO75351 AC078809.1-201ENST00000427601 140 ntBASIC3.1□□□□□ -1.91
VPS4BO75351 RPL30P1-201ENST00000488676 339 ntBASIC3.1□□□□□ -1.91
VPS4BO75351 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS4BO75351 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC3.1□□□□□ -1.91
VPS4BO75351 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC3.1□□□□□ -1.91
VPS4BO75351 AC025281.1-201ENST00000567026 265 ntBASIC3.1□□□□□ -1.91
VPS4BO75351 AC010928.2-201ENST00000588017 287 ntBASIC3.1□□□□□ -1.91
VPS4BO75351 VN1R91P-201ENST00000594377 169 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 170 ms