Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 U2.19-201ENST00000618602 191 ntBASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 RNU2-1-201ENST00000618664 191 ntBASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 U2.6-201ENST00000619225 191 ntBASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 U2.5-201ENST00000619465 191 ntBASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 U2.10-201ENST00000620268 191 ntBASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 AC112487.2-201ENST00000637950 304 ntBASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC2.41□□□□□ -2.02
UPF3AQ9H1J1 AC010680.1-201ENST00000590024 3590 ntBASIC2.4□□□□□ -2.02
UPF3AQ9H1J1 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.4□□□□□ -2.02
UPF3AQ9H1J1 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.4□□□□□ -2.02
UPF3AQ9H1J1 Y_RNA.135-201ENST00000363439 95 ntBASIC2.4□□□□□ -2.03
UPF3AQ9H1J1 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
UPF3AQ9H1J1 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC2.4□□□□□ -2.03
UPF3AQ9H1J1 Y_RNA.474-201ENST00000384341 102 ntBASIC2.4□□□□□ -2.03
UPF3AQ9H1J1 SNORA48.3-201ENST00000391081 134 ntBASIC2.4□□□□□ -2.03
UPF3AQ9H1J1 RNU6-510P-201ENST00000391239 108 ntBASIC2.4□□□□□ -2.03
UPF3AQ9H1J1 VN1R36P-201ENST00000414936 291 ntBASIC2.4□□□□□ -2.03
UPF3AQ9H1J1 AC016831.2-201ENST00000417179 352 ntBASIC2.4□□□□□ -2.03
UPF3AQ9H1J1 PGBD4P6-201ENST00000421501 610 ntBASIC2.4□□□□□ -2.03
UPF3AQ9H1J1 AC007560.1-201ENST00000426912 237 ntBASIC2.4□□□□□ -2.03
UPF3AQ9H1J1 HMGB1P9-201ENST00000429856 646 ntBASIC2.4□□□□□ -2.03
UPF3AQ9H1J1 AL078601.1-201ENST00000444542 271 ntBASIC2.4□□□□□ -2.03
UPF3AQ9H1J1 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC2.4□□□□□ -2.03
UPF3AQ9H1J1 snoU13.28-201ENST00000459235 104 ntBASIC2.4□□□□□ -2.03
UPF3AQ9H1J1 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC2.4□□□□□ -2.03
UPF3AQ9H1J1 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC2.4□□□□□ -2.03
UPF3AQ9H1J1 RNU6-277P-201ENST00000516272 106 ntBASIC2.4□□□□□ -2.03
UPF3AQ9H1J1 RNU6-256P-201ENST00000516747 97 ntBASIC2.4□□□□□ -2.03
UPF3AQ9H1J1 RNU6-295P-201ENST00000516901 104 ntBASIC2.4□□□□□ -2.03
UPF3AQ9H1J1 AC105029.1-201ENST00000520250 669 ntBASIC2.4□□□□□ -2.03
UPF3AQ9H1J1 CYCSP27-201ENST00000527643 293 ntBASIC2.4□□□□□ -2.03
UPF3AQ9H1J1 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.4□□□□□ -2.03
UPF3AQ9H1J1 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC2.4□□□□□ -2.03
UPF3AQ9H1J1 AC090616.3-201ENST00000582184 217 ntBASIC2.4□□□□□ -2.03
UPF3AQ9H1J1 FGF7P1-201ENST00000582820 288 ntBASIC2.4□□□□□ -2.03
UPF3AQ9H1J1 HMGN2P15-201ENST00000585707 270 ntBASIC2.4□□□□□ -2.03
UPF3AQ9H1J1 AL645944.1-201ENST00000603857 493 ntBASIC2.4□□□□□ -2.03
UPF3AQ9H1J1 AL132765.2-201ENST00000610812 351 ntBASIC2.4□□□□□ -2.03
UPF3AQ9H1J1 AL138726.1-201ENST00000614873 333 ntBASIC2.4□□□□□ -2.03
UPF3AQ9H1J1 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC2.4□□□□□ -2.03
UPF3AQ9H1J1 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.4□□□□□ -2.03
UPF3AQ9H1J1 AC008669.1-201ENST00000565823 2178 ntBASIC2.39□□□□□ -2.03
UPF3AQ9H1J1 RNU1-105P-201ENST00000363470 161 ntBASIC2.39□□□□□ -2.03
UPF3AQ9H1J1 SNORD113-7-201ENST00000363762 77 ntBASIC2.39□□□□□ -2.03
UPF3AQ9H1J1 Y_RNA.212-201ENST00000364177 102 ntBASIC2.39□□□□□ -2.03
UPF3AQ9H1J1 Y_RNA.339-201ENST00000365325 102 ntBASIC2.39□□□□□ -2.03
UPF3AQ9H1J1 RNU6-658P-201ENST00000384606 106 ntBASIC2.39□□□□□ -2.03
UPF3AQ9H1J1 MIR10A-201ENST00000385043 110 ntBASIC2.39□□□□□ -2.03
UPF3AQ9H1J1 SNORD73A-201ENST00000386062 65 ntBASIC2.39□□□□□ -2.03
UPF3AQ9H1J1 MIR450B-201ENST00000401182 78 ntBASIC2.39□□□□□ -2.03
UPF3AQ9H1J1 AC023141.4-201ENST00000412031 328 ntBASIC2.39□□□□□ -2.03
UPF3AQ9H1J1 AL590632.1-201ENST00000424289 371 ntBASIC2.39□□□□□ -2.03
UPF3AQ9H1J1 AL353729.1-201ENST00000425044 720 ntBASIC2.39□□□□□ -2.03
UPF3AQ9H1J1 AL627311.1-201ENST00000431514 115 ntBASIC2.39□□□□□ -2.03
UPF3AQ9H1J1 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.39□□□□□ -2.03
UPF3AQ9H1J1 MTATP6P7-201ENST00000453315 681 ntBASIC2.39□□□□□ -2.03
UPF3AQ9H1J1 MTND1P11-201ENST00000456661 876 ntBASIC2.39□□□□□ -2.03
UPF3AQ9H1J1 MTND4P17-201ENST00000470444 350 ntBASIC2.39□□□□□ -2.03
UPF3AQ9H1J1 TRBVA-201ENST00000498804 316 ntBASIC2.39□□□□□ -2.03
UPF3AQ9H1J1 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.39□□□□□ -2.03
UPF3AQ9H1J1 FGF7P4-201ENST00000509595 295 ntBASIC2.39□□□□□ -2.03
UPF3AQ9H1J1 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.39□□□□□ -2.03
UPF3AQ9H1J1 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.39□□□□□ -2.03
UPF3AQ9H1J1 RNA5SP458-201ENST00000516188 119 ntBASIC2.39□□□□□ -2.03
UPF3AQ9H1J1 Y_RNA.691-201ENST00000516611 103 ntBASIC2.39□□□□□ -2.03
UPF3AQ9H1J1 RNU6-273P-201ENST00000516937 96 ntBASIC2.39□□□□□ -2.03
UPF3AQ9H1J1 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC2.39□□□□□ -2.03
UPF3AQ9H1J1 COPS8P3-201ENST00000526024 482 ntBASIC2.39□□□□□ -2.03
UPF3AQ9H1J1 MIR4446-201ENST00000578505 67 ntBASIC2.39□□□□□ -2.03
UPF3AQ9H1J1 MIR3941-201ENST00000582572 103 ntBASIC2.39□□□□□ -2.03
UPF3AQ9H1J1 AC023043.2-201ENST00000589678 1026 ntBASIC2.39□□□□□ -2.03
UPF3AQ9H1J1 AC005498.1-201ENST00000592125 465 ntBASIC2.39□□□□□ -2.03
UPF3AQ9H1J1 AC093913.1-201ENST00000614178 329 ntBASIC2.39□□□□□ -2.03
UPF3AQ9H1J1 AC009233.1-201ENST00000616477 371 ntBASIC2.39□□□□□ -2.03
UPF3AQ9H1J1 AL359697.1-201ENST00000624879 587 ntBASIC2.39□□□□□ -2.03
UPF3AQ9H1J1 TPTEP1-208ENST00000636884 213 ntBASIC2.39□□□□□ -2.03
UPF3AQ9H1J1 Y_RNA.480-201ENST00000384364 102 ntBASIC2.38□□□□□ -2.03
UPF3AQ9H1J1 Y_RNA.509-201ENST00000384506 99 ntBASIC2.38□□□□□ -2.03
UPF3AQ9H1J1 RPL26P27-201ENST00000414397 437 ntBASIC2.38□□□□□ -2.03
UPF3AQ9H1J1 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC2.38□□□□□ -2.03
UPF3AQ9H1J1 BPY2DP-201ENST00000422208 265 ntBASIC2.38□□□□□ -2.03
UPF3AQ9H1J1 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.38□□□□□ -2.03
UPF3AQ9H1J1 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.38□□□□□ -2.03
UPF3AQ9H1J1 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC2.38□□□□□ -2.03
UPF3AQ9H1J1 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC2.38□□□□□ -2.03
UPF3AQ9H1J1 PPP1R2P5-201ENST00000457256 603 ntBASIC2.38□□□□□ -2.03
UPF3AQ9H1J1 HMGB1P30-201ENST00000492455 606 ntBASIC2.38□□□□□ -2.03
UPF3AQ9H1J1 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.38□□□□□ -2.03
UPF3AQ9H1J1 AC113155.1-201ENST00000511141 769 ntBASIC2.38□□□□□ -2.03
UPF3AQ9H1J1 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.38□□□□□ -2.03
UPF3AQ9H1J1 RNU6-323P-201ENST00000521915 107 ntBASIC2.38□□□□□ -2.03
UPF3AQ9H1J1 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC2.38□□□□□ -2.03
UPF3AQ9H1J1 AC093027.1-201ENST00000546698 429 ntBASIC2.38□□□□□ -2.03
UPF3AQ9H1J1 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC2.38□□□□□ -2.03
UPF3AQ9H1J1 PRELID2P1-201ENST00000552837 301 ntBASIC2.38□□□□□ -2.03
UPF3AQ9H1J1 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.38□□□□□ -2.03
UPF3AQ9H1J1 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC2.38□□□□□ -2.03
UPF3AQ9H1J1 AC063943.3-201ENST00000615562 356 ntBASIC2.38□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 132.9 ms