Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 AK3P2-201ENST00000507976 429 ntBASIC2.56□□□□□ -2
ZNF541Q9H0D2 SNORA14.1-201ENST00000516113 141 ntBASIC2.56□□□□□ -2
ZNF541Q9H0D2 SNORA25.17-201ENST00000517184 124 ntBASIC2.56□□□□□ -2
ZNF541Q9H0D2 RN7SKP40-201ENST00000517211 242 ntBASIC2.56□□□□□ -2
ZNF541Q9H0D2 AL133241.1-201ENST00000556832 487 ntBASIC2.56□□□□□ -2
ZNF541Q9H0D2 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC2.56□□□□□ -2
ZNF541Q9H0D2 AL356575.1-201ENST00000603008 283 ntBASIC2.56□□□□□ -2
ZNF541Q9H0D2 APOOP1-201ENST00000604695 592 ntBASIC2.56□□□□□ -2
ZNF541Q9H0D2 RNU6-91P-201ENST00000607774 107 ntBASIC2.56□□□□□ -2
ZNF541Q9H0D2 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.56□□□□□ -2
ZNF541Q9H0D2 AL121757.2-201ENST00000611223 313 ntBASIC2.56□□□□□ -2
ZNF541Q9H0D2 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC2.56□□□□□ -2
ZNF541Q9H0D2 RMST_7.1-201ENST00000621935 268 ntBASIC2.56□□□□□ -2
ZNF541Q9H0D2 MIR3688-2-201ENST00000636963 87 ntBASIC2.56□□□□□ -2
ZNF541Q9H0D2 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.55□□□□□ -2
ZNF541Q9H0D2 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.55□□□□□ -2
ZNF541Q9H0D2 VTRNA1-1-201ENST00000363120 99 ntBASIC2.55□□□□□ -2
ZNF541Q9H0D2 RNU6-843P-201ENST00000384454 104 ntBASIC2.55□□□□□ -2
ZNF541Q9H0D2 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC2.55□□□□□ -2
ZNF541Q9H0D2 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.55□□□□□ -2
ZNF541Q9H0D2 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.55□□□□□ -2
ZNF541Q9H0D2 AL445687.1-201ENST00000439946 251 ntBASIC2.55□□□□□ -2
ZNF541Q9H0D2 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC2.55□□□□□ -2
ZNF541Q9H0D2 AC245517.4-201ENST00000448601 281 ntBASIC2.55□□□□□ -2
ZNF541Q9H0D2 SNRPGP7-201ENST00000469016 106 ntBASIC2.55□□□□□ -2
ZNF541Q9H0D2 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC2.55□□□□□ -2
ZNF541Q9H0D2 RPL30P12-201ENST00000474666 353 ntBASIC2.55□□□□□ -2
ZNF541Q9H0D2 SNORA19.2-201ENST00000516013 114 ntBASIC2.55□□□□□ -2
ZNF541Q9H0D2 SCARNA3-201ENST00000517097 143 ntBASIC2.55□□□□□ -2
ZNF541Q9H0D2 AC087854.1-201ENST00000519706 414 ntBASIC2.55□□□□□ -2
ZNF541Q9H0D2 AC078814.3-201ENST00000553036 491 ntBASIC2.55□□□□□ -2
ZNF541Q9H0D2 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.55□□□□□ -2
ZNF541Q9H0D2 MTCO3P23-201ENST00000561363 289 ntBASIC2.55□□□□□ -2
ZNF541Q9H0D2 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.55□□□□□ -2
ZNF541Q9H0D2 RPS15AP11-201ENST00000594193 385 ntBASIC2.55□□□□□ -2
ZNF541Q9H0D2 AL670379.2-201ENST00000604983 252 ntBASIC2.55□□□□□ -2
ZNF541Q9H0D2 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.55□□□□□ -2
ZNF541Q9H0D2 AC097372.5-201ENST00000623665 376 ntBASIC2.55□□□□□ -2
ZNF541Q9H0D2 MIR7157-201ENST00000635801 60 ntBASIC2.55□□□□□ -2
ZNF541Q9H0D2 MIR3662-201ENST00000637030 95 ntBASIC2.55□□□□□ -2
ZNF541Q9H0D2 AC024614.3-201ENST00000637860 256 ntBASIC2.55□□□□□ -2
ZNF541Q9H0D2 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC2.55□□□□□ -2
ZNF541Q9H0D2 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.55□□□□□ -2
ZNF541Q9H0D2 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC2.55□□□□□ -2
ZNF541Q9H0D2 SET-203ENST00000372688 801 ntTSL 2 BASIC2.54□□□□□ -2
ZNF541Q9H0D2 EIF4E2P1-201ENST00000393781 255 ntBASIC2.54□□□□□ -2
ZNF541Q9H0D2 FGF7P8-201ENST00000402994 292 ntBASIC2.54□□□□□ -2
ZNF541Q9H0D2 Y_RNA.615-201ENST00000410769 117 ntBASIC2.54□□□□□ -2
ZNF541Q9H0D2 RNU6-321P-201ENST00000410912 106 ntBASIC2.54□□□□□ -2
ZNF541Q9H0D2 SNORD56-201ENST00000413522 71 ntBASIC2.54□□□□□ -2
ZNF541Q9H0D2 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.54□□□□□ -2
ZNF541Q9H0D2 MTATP6P13-201ENST00000438531 667 ntBASIC2.54□□□□□ -2
ZNF541Q9H0D2 AP000705.1-201ENST00000454567 350 ntBASIC2.54□□□□□ -2
ZNF541Q9H0D2 RNU7-138P-201ENST00000459479 64 ntBASIC2.54□□□□□ -2
ZNF541Q9H0D2 RNU6-1208P-201ENST00000459588 107 ntBASIC2.54□□□□□ -2
ZNF541Q9H0D2 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.54□□□□□ -2
ZNF541Q9H0D2 NAF1-205ENST00000509434 385 ntTSL 3 BASIC2.54□□□□□ -2
ZNF541Q9H0D2 AC011352.1-201ENST00000512300 793 ntBASIC2.54□□□□□ -2
ZNF541Q9H0D2 MTND4LP26-201ENST00000518144 282 ntBASIC2.54□□□□□ -2
ZNF541Q9H0D2 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.54□□□□□ -2
ZNF541Q9H0D2 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC2.54□□□□□ -2
ZNF541Q9H0D2 AC090115.3-201ENST00000553218 849 ntBASIC2.54□□□□□ -2
ZNF541Q9H0D2 AL118558.2-201ENST00000556294 238 ntBASIC2.54□□□□□ -2
ZNF541Q9H0D2 AC110588.1-201ENST00000559699 137 ntBASIC2.54□□□□□ -2
ZNF541Q9H0D2 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.54□□□□□ -2
ZNF541Q9H0D2 AC123912.5-201ENST00000605470 343 ntBASIC2.54□□□□□ -2
ZNF541Q9H0D2 AC092794.1-201ENST00000612734 582 ntBASIC2.54□□□□□ -2
ZNF541Q9H0D2 Y_RNA.783-201ENST00000613546 102 ntBASIC2.54□□□□□ -2
ZNF541Q9H0D2 AC093913.1-201ENST00000614178 329 ntBASIC2.54□□□□□ -2
ZNF541Q9H0D2 AC103705.1-201ENST00000619013 241 ntBASIC2.54□□□□□ -2
ZNF541Q9H0D2 AC024581.2-201ENST00000619986 252 ntBASIC2.54□□□□□ -2
ZNF541Q9H0D2 AC007792.1-201ENST00000623023 402 ntBASIC2.54□□□□□ -2
ZNF541Q9H0D2 AC138627.2-201ENST00000624202 601 ntBASIC2.54□□□□□ -2
ZNF541Q9H0D2 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.53□□□□□ -2
ZNF541Q9H0D2 RNU6-461P-201ENST00000364195 107 ntBASIC2.53□□□□□ -2
ZNF541Q9H0D2 DEFA7P-201ENST00000382676 285 ntBASIC2.53□□□□□ -2
ZNF541Q9H0D2 RNU6-1328P-201ENST00000410938 106 ntBASIC2.53□□□□□ -2
ZNF541Q9H0D2 RNU6-293P-201ENST00000411259 106 ntBASIC2.53□□□□□ -2
ZNF541Q9H0D2 AC009161.1-201ENST00000417306 376 ntBASIC2.53□□□□□ -2
ZNF541Q9H0D2 SNRPEP10-201ENST00000420249 274 ntBASIC2.53□□□□□ -2
ZNF541Q9H0D2 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.53□□□□□ -2
ZNF541Q9H0D2 Z82205.1-201ENST00000428456 297 ntBASIC2.53□□□□□ -2
ZNF541Q9H0D2 SUMO1P4-201ENST00000429430 302 ntBASIC2.53□□□□□ -2
ZNF541Q9H0D2 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.53□□□□□ -2
ZNF541Q9H0D2 AC073901.1-201ENST00000462471 408 ntBASIC2.53□□□□□ -2
ZNF541Q9H0D2 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC2.53□□□□□ -2
ZNF541Q9H0D2 AC140059.1-201ENST00000489238 361 ntBASIC2.53□□□□□ -2
ZNF541Q9H0D2 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC2.53□□□□□ -2
ZNF541Q9H0D2 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC2.53□□□□□ -2
ZNF541Q9H0D2 AC069294.1-201ENST00000608397 350 ntBASIC2.53□□□□□ -2
ZNF541Q9H0D2 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC2.53□□□□□ -2
ZNF541Q9H0D2 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC2.53□□□□□ -2
ZNF541Q9H0D2 AC007014.2-201ENST00000615581 479 ntBASIC2.53□□□□□ -2
ZNF541Q9H0D2 AC244517.12-201ENST00000623581 663 ntBASIC2.53□□□□□ -2
ZNF541Q9H0D2 AC100810.6-201ENST00000638068 285 ntBASIC2.53□□□□□ -2
ZNF541Q9H0D2 U4.7-201ENST00000638126 106 ntBASIC2.53□□□□□ -2
ZNF541Q9H0D2 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.53□□□□□ -2
ZNF541Q9H0D2 HAUS6P2-201ENST00000433254 2404 ntBASIC2.52□□□□□ -2.01
ZNF541Q9H0D2 RNU6-212P-201ENST00000362642 104 ntBASIC2.52□□□□□ -2.01
ZNF541Q9H0D2 RNU6-451P-201ENST00000362921 107 ntBASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms