Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC127459.3-201ENST00000624328 466 ntBASIC3.35□□□□□ -1.87
MSX2P35548 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.35□□□□□ -1.87
MSX2P35548 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.35□□□□□ -1.87
MSX2P35548 MIR492-201ENST00000638676 116 ntBASIC3.35□□□□□ -1.87
MSX2P35548 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
MSX2P35548 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
MSX2P35548 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
MSX2P35548 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
MSX2P35548 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
MSX2P35548 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.34□□□□□ -1.87
MSX2P35548 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
MSX2P35548 AL157777.2-201ENST00000258070 137 ntBASIC3.34□□□□□ -1.87
MSX2P35548 MIR372-201ENST00000362225 67 ntBASIC3.34□□□□□ -1.87
MSX2P35548 SNORD32A-201ENST00000364805 84 ntBASIC3.34□□□□□ -1.87
MSX2P35548 RNU6-658P-201ENST00000384606 106 ntBASIC3.34□□□□□ -1.87
MSX2P35548 MIR32-201ENST00000384965 70 ntBASIC3.34□□□□□ -1.87
MSX2P35548 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC3.34□□□□□ -1.87
MSX2P35548 EIF1AXP1-201ENST00000419267 435 ntBASIC3.34□□□□□ -1.87
MSX2P35548 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.34□□□□□ -1.87
MSX2P35548 AL445305.1-201ENST00000432577 575 ntBASIC3.34□□□□□ -1.87
MSX2P35548 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.34□□□□□ -1.87
MSX2P35548 AC005002.2-201ENST00000438228 269 ntBASIC3.34□□□□□ -1.87
MSX2P35548 AL392103.1-201ENST00000447000 198 ntBASIC3.34□□□□□ -1.87
MSX2P35548 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.34□□□□□ -1.87
MSX2P35548 AP000870.1-201ENST00000472927 406 ntBASIC3.34□□□□□ -1.87
MSX2P35548 MED28P2-201ENST00000475771 317 ntBASIC3.34□□□□□ -1.87
MSX2P35548 RN7SL132P-201ENST00000478131 296 ntBASIC3.34□□□□□ -1.87
MSX2P35548 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC3.34□□□□□ -1.87
MSX2P35548 SNORA31.1-201ENST00000515993 133 ntBASIC3.34□□□□□ -1.87
MSX2P35548 SNORA31.5-201ENST00000516190 133 ntBASIC3.34□□□□□ -1.87
MSX2P35548 RNU6-579P-201ENST00000516879 102 ntBASIC3.34□□□□□ -1.87
MSX2P35548 RNU6-789P-201ENST00000517105 102 ntBASIC3.34□□□□□ -1.87
MSX2P35548 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.34□□□□□ -1.87
MSX2P35548 CBX3P4-201ENST00000538909 354 ntBASIC3.34□□□□□ -1.87
MSX2P35548 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.34□□□□□ -1.87
MSX2P35548 RNU1-30P-201ENST00000606575 163 ntBASIC3.34□□□□□ -1.87
MSX2P35548 SNORA43.4-201ENST00000629559 138 ntBASIC3.34□□□□□ -1.87
MSX2P35548 ZNF826P-207ENST00000622273 1910 ntBASIC3.34□□□□□ -1.88
MSX2P35548 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
MSX2P35548 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.34□□□□□ -1.88
MSX2P35548 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.34□□□□□ -1.88
MSX2P35548 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
MSX2P35548 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.33□□□□□ -1.88
MSX2P35548 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.33□□□□□ -1.88
MSX2P35548 AC058791.1-201ENST00000608412 3198 ntBASIC3.33□□□□□ -1.88
MSX2P35548 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.33□□□□□ -1.88
MSX2P35548 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
MSX2P35548 Y_RNA.76-201ENST00000362931 109 ntBASIC3.33□□□□□ -1.88
MSX2P35548 Y_RNA.83-201ENST00000363005 113 ntBASIC3.33□□□□□ -1.88
MSX2P35548 SNORA62.3-201ENST00000365110 153 ntBASIC3.33□□□□□ -1.88
MSX2P35548 MIR554-201ENST00000384874 96 ntBASIC3.33□□□□□ -1.88
MSX2P35548 RNA5SP44-201ENST00000410446 133 ntBASIC3.33□□□□□ -1.88
MSX2P35548 RPL23AP95-201ENST00000426806 265 ntBASIC3.33□□□□□ -1.88
MSX2P35548 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC3.33□□□□□ -1.88
MSX2P35548 RPS15AP7-201ENST00000439294 405 ntBASIC3.33□□□□□ -1.88
MSX2P35548 AC006026.2-201ENST00000457376 180 ntBASIC3.33□□□□□ -1.88
MSX2P35548 HMGN1P18-201ENST00000457642 277 ntBASIC3.33□□□□□ -1.88
MSX2P35548 Y_RNA.644-201ENST00000459006 113 ntBASIC3.33□□□□□ -1.88
MSX2P35548 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.33□□□□□ -1.88
MSX2P35548 RNU6-1114P-201ENST00000516022 107 ntBASIC3.33□□□□□ -1.88
MSX2P35548 Y_RNA.674-201ENST00000516362 113 ntBASIC3.33□□□□□ -1.88
MSX2P35548 AC104027.1-201ENST00000521887 300 ntBASIC3.33□□□□□ -1.88
MSX2P35548 HIGD1AP1-201ENST00000550979 275 ntBASIC3.33□□□□□ -1.88
MSX2P35548 AC006130.2-201ENST00000586202 326 ntBASIC3.33□□□□□ -1.88
MSX2P35548 AC099778.2-201ENST00000610904 211 ntBASIC3.33□□□□□ -1.88
MSX2P35548 MIR7153-201ENST00000637758 57 ntBASIC3.33□□□□□ -1.88
MSX2P35548 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.33□□□□□ -1.88
MSX2P35548 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.33□□□□□ -1.88
MSX2P35548 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.33□□□□□ -1.88
MSX2P35548 FAM35BP-202ENST00000497389 3337 ntBASIC3.32□□□□□ -1.88
MSX2P35548 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
MSX2P35548 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC3.32□□□□□ -1.88
MSX2P35548 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
MSX2P35548 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.32□□□□□ -1.88
MSX2P35548 RNU4-90P-201ENST00000362773 141 ntBASIC3.32□□□□□ -1.88
MSX2P35548 RNU5B-2P-201ENST00000363036 113 ntBASIC3.32□□□□□ -1.88
MSX2P35548 RNU6-270P-201ENST00000364131 105 ntBASIC3.32□□□□□ -1.88
MSX2P35548 RNU1-73P-201ENST00000383971 164 ntBASIC3.32□□□□□ -1.88
MSX2P35548 RNU6-926P-201ENST00000384075 107 ntBASIC3.32□□□□□ -1.88
MSX2P35548 SNORA29-201ENST00000384183 140 ntBASIC3.32□□□□□ -1.88
MSX2P35548 RNU6-843P-201ENST00000384454 104 ntBASIC3.32□□□□□ -1.88
MSX2P35548 Y_RNA.504-201ENST00000384481 104 ntBASIC3.32□□□□□ -1.88
MSX2P35548 MIR30B-201ENST00000384850 88 ntBASIC3.32□□□□□ -1.88
MSX2P35548 MIR153-2-201ENST00000385225 87 ntBASIC3.32□□□□□ -1.88
MSX2P35548 MIR670-201ENST00000390142 98 ntBASIC3.32□□□□□ -1.88
MSX2P35548 RPL26P27-201ENST00000414397 437 ntBASIC3.32□□□□□ -1.88
MSX2P35548 AC093578.1-201ENST00000415219 368 ntBASIC3.32□□□□□ -1.88
MSX2P35548 AL117339.2-201ENST00000430475 180 ntBASIC3.32□□□□□ -1.88
MSX2P35548 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC3.32□□□□□ -1.88
MSX2P35548 AC087477.1-201ENST00000465747 340 ntBASIC3.32□□□□□ -1.88
MSX2P35548 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.32□□□□□ -1.88
MSX2P35548 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.32□□□□□ -1.88
MSX2P35548 SNORA64.4-201ENST00000516632 81 ntBASIC3.32□□□□□ -1.88
MSX2P35548 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.32□□□□□ -1.88
MSX2P35548 SNORA70.19-201ENST00000516717 90 ntBASIC3.32□□□□□ -1.88
MSX2P35548 RNU1-45P-201ENST00000517191 141 ntBASIC3.32□□□□□ -1.88
MSX2P35548 AC027288.2-201ENST00000553028 243 ntBASIC3.32□□□□□ -1.88
MSX2P35548 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC3.32□□□□□ -1.88
MSX2P35548 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.32□□□□□ -1.88
MSX2P35548 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 126 ms