Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 RNU6-1038P-201ENST00000516516 104 ntBASIC2.24□□□□□ -2.05
SIX3O95343 RNU6-965P-201ENST00000516721 96 ntBASIC2.24□□□□□ -2.05
SIX3O95343 AC034114.1-201ENST00000520293 285 ntBASIC2.24□□□□□ -2.05
SIX3O95343 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.24□□□□□ -2.05
SIX3O95343 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC2.24□□□□□ -2.05
SIX3O95343 AP000889.2-201ENST00000532684 490 ntBASIC2.24□□□□□ -2.05
SIX3O95343 AL512360.1-201ENST00000555346 234 ntBASIC2.24□□□□□ -2.05
SIX3O95343 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC2.24□□□□□ -2.05
SIX3O95343 MIR4446-201ENST00000578505 67 ntBASIC2.24□□□□□ -2.05
SIX3O95343 AC078899.2-201ENST00000595282 212 ntBASIC2.24□□□□□ -2.05
SIX3O95343 AC092747.3-201ENST00000603769 301 ntBASIC2.24□□□□□ -2.05
SIX3O95343 AP001330.5-201ENST00000607176 411 ntBASIC2.24□□□□□ -2.05
SIX3O95343 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.24□□□□□ -2.05
SIX3O95343 MIR6766-201ENST00000622641 72 ntBASIC2.24□□□□□ -2.05
SIX3O95343 AC124864.2-201ENST00000624736 186 ntBASIC2.24□□□□□ -2.05
SIX3O95343 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
SIX3O95343 ZNF720P1-201ENST00000562403 1939 ntBASIC2.23□□□□□ -2.05
SIX3O95343 Y_RNA.597-201ENST00000410463 100 ntBASIC2.23□□□□□ -2.05
SIX3O95343 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.23□□□□□ -2.05
SIX3O95343 AL135786.1-201ENST00000415892 214 ntBASIC2.23□□□□□ -2.05
SIX3O95343 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC2.23□□□□□ -2.05
SIX3O95343 Z98742.3-201ENST00000418637 326 ntBASIC2.23□□□□□ -2.05
SIX3O95343 AL353752.1-201ENST00000454946 260 ntBASIC2.23□□□□□ -2.05
SIX3O95343 AC083798.1-201ENST00000472671 131 ntBASIC2.23□□□□□ -2.05
SIX3O95343 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC2.23□□□□□ -2.05
SIX3O95343 RPL9P6-201ENST00000492764 598 ntBASIC2.23□□□□□ -2.05
SIX3O95343 RN7SL636P-201ENST00000497504 294 ntBASIC2.23□□□□□ -2.05
SIX3O95343 AC107222.1-201ENST00000510899 637 ntBASIC2.23□□□□□ -2.05
SIX3O95343 RN7SKP256-201ENST00000517201 314 ntBASIC2.23□□□□□ -2.05
SIX3O95343 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC2.23□□□□□ -2.05
SIX3O95343 AC107953.1-201ENST00000522216 297 ntBASIC2.23□□□□□ -2.05
SIX3O95343 AC104383.1-201ENST00000530297 370 ntBASIC2.23□□□□□ -2.05
SIX3O95343 NDUFA5P6-201ENST00000542110 379 ntBASIC2.23□□□□□ -2.05
SIX3O95343 MTCO3P23-201ENST00000561363 289 ntBASIC2.23□□□□□ -2.05
SIX3O95343 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC2.23□□□□□ -2.05
SIX3O95343 VN1R80P-201ENST00000597126 338 ntBASIC2.23□□□□□ -2.05
SIX3O95343 AC022202.1-201ENST00000613515 211 ntBASIC2.23□□□□□ -2.05
SIX3O95343 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
SIX3O95343 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.23□□□□□ -2.05
SIX3O95343 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.23□□□□□ -2.05
SIX3O95343 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
SIX3O95343 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
SIX3O95343 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC2.23□□□□□ -2.05
SIX3O95343 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.23□□□□□ -2.05
SIX3O95343 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.22□□□□□ -2.05
SIX3O95343 Y_RNA.140-201ENST00000363474 103 ntBASIC2.22□□□□□ -2.05
SIX3O95343 Y_RNA.194-201ENST00000363985 102 ntBASIC2.22□□□□□ -2.05
SIX3O95343 SNORA6-201ENST00000384033 151 ntBASIC2.22□□□□□ -2.05
SIX3O95343 RNU6-692P-201ENST00000384496 107 ntBASIC2.22□□□□□ -2.05
SIX3O95343 RNU4-26P-201ENST00000410270 107 ntBASIC2.22□□□□□ -2.05
SIX3O95343 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC2.22□□□□□ -2.05
SIX3O95343 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.22□□□□□ -2.05
SIX3O95343 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC2.22□□□□□ -2.05
SIX3O95343 PSPHP1-201ENST00000450062 261 ntBASIC2.22□□□□□ -2.05
SIX3O95343 AL137159.1-201ENST00000452808 512 ntBASIC2.22□□□□□ -2.05
SIX3O95343 RNU7-138P-201ENST00000459479 64 ntBASIC2.22□□□□□ -2.05
SIX3O95343 AC105313.1-201ENST00000509121 353 ntBASIC2.22□□□□□ -2.05
SIX3O95343 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.22□□□□□ -2.05
SIX3O95343 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.22□□□□□ -2.05
SIX3O95343 HSPE1P4-201ENST00000550617 308 ntBASIC2.22□□□□□ -2.05
SIX3O95343 PRELID2P1-201ENST00000552837 301 ntBASIC2.22□□□□□ -2.05
SIX3O95343 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC2.22□□□□□ -2.05
SIX3O95343 MIR4529-201ENST00000578110 78 ntBASIC2.22□□□□□ -2.05
SIX3O95343 MIR5694-201ENST00000581190 76 ntBASIC2.22□□□□□ -2.05
SIX3O95343 MIR5007-201ENST00000583098 95 ntBASIC2.22□□□□□ -2.05
SIX3O95343 AL357078.3-201ENST00000607528 618 ntBASIC2.22□□□□□ -2.05
SIX3O95343 AC097065.2-201ENST00000608159 533 ntBASIC2.22□□□□□ -2.05
SIX3O95343 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
SIX3O95343 AL159153.1-201ENST00000619688 317 ntBASIC2.22□□□□□ -2.05
SIX3O95343 SNORD98-201ENST00000636377 67 ntBASIC2.22□□□□□ -2.05
SIX3O95343 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.21□□□□□ -2.06
SIX3O95343 Y_RNA.517-201ENST00000384551 106 ntBASIC2.21□□□□□ -2.06
SIX3O95343 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
SIX3O95343 BTF3L4P2-201ENST00000392798 346 ntBASIC2.21□□□□□ -2.06
SIX3O95343 POLHP1-201ENST00000411806 470 ntBASIC2.21□□□□□ -2.06
SIX3O95343 AL117339.3-201ENST00000418733 162 ntBASIC2.21□□□□□ -2.06
SIX3O95343 AL590135.1-201ENST00000422215 156 ntBASIC2.21□□□□□ -2.06
SIX3O95343 AC019205.3-201ENST00000424573 156 ntBASIC2.21□□□□□ -2.06
SIX3O95343 AC244670.1-201ENST00000436879 112 ntBASIC2.21□□□□□ -2.06
SIX3O95343 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC2.21□□□□□ -2.06
SIX3O95343 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC2.21□□□□□ -2.06
SIX3O95343 AC016700.2-201ENST00000446011 156 ntBASIC2.21□□□□□ -2.06
SIX3O95343 AC245102.2-201ENST00000448956 180 ntBASIC2.21□□□□□ -2.06
SIX3O95343 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.21□□□□□ -2.06
SIX3O95343 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC2.21□□□□□ -2.06
SIX3O95343 AC015911.1-201ENST00000495111 156 ntBASIC2.21□□□□□ -2.06
SIX3O95343 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.21□□□□□ -2.06
SIX3O95343 RNU5F-2P-201ENST00000516066 82 ntBASIC2.21□□□□□ -2.06
SIX3O95343 Y_RNA.670-201ENST00000516255 105 ntBASIC2.21□□□□□ -2.06
SIX3O95343 RNU6-323P-201ENST00000521915 107 ntBASIC2.21□□□□□ -2.06
SIX3O95343 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC2.21□□□□□ -2.06
SIX3O95343 MYL12BP1-201ENST00000569826 507 ntBASIC2.21□□□□□ -2.06
SIX3O95343 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC2.21□□□□□ -2.06
SIX3O95343 SNRPGP17-201ENST00000603780 214 ntBASIC2.21□□□□□ -2.06
SIX3O95343 AL034555.1-201ENST00000604816 211 ntBASIC2.21□□□□□ -2.06
SIX3O95343 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC2.21□□□□□ -2.06
SIX3O95343 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC2.21□□□□□ -2.06
SIX3O95343 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
SIX3O95343 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.2□□□□□ -2.06
SIX3O95343 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2.2□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 111.7 ms