Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AC104581.2-201ENST00000572227 430 ntBASIC2.83□□□□□ -1.96
CCDC28AQ8IWP9 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.83□□□□□ -1.96
CCDC28AQ8IWP9 AL356055.1-201ENST00000602528 446 ntBASIC2.83□□□□□ -1.96
CCDC28AQ8IWP9 AL078605.1-201ENST00000603529 500 ntBASIC2.83□□□□□ -1.96
CCDC28AQ8IWP9 MIR6748-201ENST00000610433 71 ntBASIC2.83□□□□□ -1.96
CCDC28AQ8IWP9 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC2.83□□□□□ -1.96
CCDC28AQ8IWP9 MIR6500-201ENST00000622700 86 ntBASIC2.83□□□□□ -1.96
CCDC28AQ8IWP9 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
CCDC28AQ8IWP9 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.83□□□□□ -1.96
CCDC28AQ8IWP9 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.83□□□□□ -1.96
CCDC28AQ8IWP9 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 SPRR2C-201ENST00000290702 219 ntBASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 Y_RNA.128-201ENST00000363391 112 ntBASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 Y_RNA.138-201ENST00000363462 102 ntBASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 RNU6-461P-201ENST00000364195 107 ntBASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 RNU6-99P-201ENST00000364721 107 ntBASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 SNORA56-201ENST00000383966 129 ntBASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 Y_RNA.445-201ENST00000384168 102 ntBASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 MIR141-201ENST00000384975 95 ntBASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 U3.39-201ENST00000408569 239 ntBASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 AL356968.1-201ENST00000416622 474 ntBASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 AL356095.1-201ENST00000417217 199 ntBASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 AC007098.1-201ENST00000420122 367 ntBASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 AC099799.1-201ENST00000439809 192 ntBASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 AC009220.1-201ENST00000451614 275 ntBASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 CYCSP35-201ENST00000451978 304 ntBASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 RPS3P1-201ENST00000456781 192 ntBASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 FTH1P2-201ENST00000466086 412 ntBASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 RNU6-1153P-201ENST00000516760 105 ntBASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 RNU6-699P-201ENST00000517081 110 ntBASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 HSPE1P20-201ENST00000538133 289 ntBASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 SNRPGP18-201ENST00000553000 214 ntBASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 CYP4A27P-201ENST00000567218 190 ntBASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 MIR3923-201ENST00000579521 83 ntBASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 AC100812.1-201ENST00000607622 580 ntBASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 RMST_6.1-201ENST00000611980 203 ntBASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 MESTIT1_1.1-201ENST00000618871 140 ntBASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 MIR6758-201ENST00000620653 63 ntBASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 RNA5SP196-201ENST00000625967 102 ntBASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 MTND4P27-201ENST00000450813 1354 ntBASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
CCDC28AQ8IWP9 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
CCDC28AQ8IWP9 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.81□□□□□ -1.96
CCDC28AQ8IWP9 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC2.81□□□□□ -1.96
CCDC28AQ8IWP9 RNU6-1159P-201ENST00000362933 107 ntBASIC2.81□□□□□ -1.96
CCDC28AQ8IWP9 VTRNA1-1-201ENST00000363120 99 ntBASIC2.81□□□□□ -1.96
CCDC28AQ8IWP9 Y_RNA.112-201ENST00000363250 102 ntBASIC2.81□□□□□ -1.96
CCDC28AQ8IWP9 RNU6-1227P-201ENST00000383981 107 ntBASIC2.81□□□□□ -1.96
CCDC28AQ8IWP9 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC2.81□□□□□ -1.96
CCDC28AQ8IWP9 SNORA12.2-201ENST00000391040 156 ntBASIC2.81□□□□□ -1.96
CCDC28AQ8IWP9 AL138885.1-201ENST00000405921 675 ntBASIC2.81□□□□□ -1.96
CCDC28AQ8IWP9 RPS26P42-201ENST00000413485 326 ntBASIC2.81□□□□□ -1.96
CCDC28AQ8IWP9 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC2.81□□□□□ -1.96
CCDC28AQ8IWP9 AC005534.2-201ENST00000431047 433 ntBASIC2.81□□□□□ -1.96
CCDC28AQ8IWP9 Z82188.1-201ENST00000436709 154 ntBASIC2.81□□□□□ -1.96
CCDC28AQ8IWP9 Z96811.1-201ENST00000445880 108 ntBASIC2.81□□□□□ -1.96
CCDC28AQ8IWP9 Y_RNA.631-201ENST00000459607 101 ntBASIC2.81□□□□□ -1.96
CCDC28AQ8IWP9 RPL23AP70-201ENST00000483361 460 ntBASIC2.81□□□□□ -1.96
CCDC28AQ8IWP9 RNU6-579P-201ENST00000516879 102 ntBASIC2.81□□□□□ -1.96
CCDC28AQ8IWP9 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC2.81□□□□□ -1.96
CCDC28AQ8IWP9 AC010928.2-201ENST00000588017 287 ntBASIC2.81□□□□□ -1.96
CCDC28AQ8IWP9 AC006077.1-201ENST00000604746 343 ntBASIC2.81□□□□□ -1.96
CCDC28AQ8IWP9 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC2.81□□□□□ -1.96
CCDC28AQ8IWP9 uc_338.22-201ENST00000622722 187 ntBASIC2.81□□□□□ -1.96
CCDC28AQ8IWP9 AC091903.1-201ENST00000624322 454 ntBASIC2.81□□□□□ -1.96
CCDC28AQ8IWP9 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.81□□□□□ -1.96
CCDC28AQ8IWP9 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.81□□□□□ -1.96
CCDC28AQ8IWP9 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
CCDC28AQ8IWP9 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 Y_RNA.252-201ENST00000364556 101 ntBASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 Y_RNA.405-201ENST00000383979 100 ntBASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 Y_RNA.428-201ENST00000384078 102 ntBASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 Y_RNA.451-201ENST00000384200 100 ntBASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 Y_RNA.524-201ENST00000384564 100 ntBASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 Y_RNA.561-201ENST00000384694 100 ntBASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 MIR627-201ENST00000384979 97 ntBASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 MIR153-2-201ENST00000385225 87 ntBASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 MIR548P-201ENST00000408336 84 ntBASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 SNORA3.3-201ENST00000408712 125 ntBASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 RNA5SP492-201ENST00000411330 114 ntBASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 HMGN2P35-201ENST00000412164 270 ntBASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 AL590556.1-201ENST00000423231 483 ntBASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 CEP57L1P1-201ENST00000430943 1201 ntBASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 MTCO3P29-201ENST00000432119 779 ntBASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 AL137792.2-201ENST00000443484 235 ntBASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 OR2AQ1P-201ENST00000451972 200 ntBASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 AL353752.1-201ENST00000454946 260 ntBASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 RN7SL385P-201ENST00000468873 276 ntBASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 AP004217.1-201ENST00000480579 346 ntBASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC2.8□□□□□ -1.96
CCDC28AQ8IWP9 Y_RNA.706-201ENST00000516933 99 ntBASIC2.8□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms