Protein–RNA interactions for Protein: Q53GD3

SLC44A4, Choline transporter-like protein 4, humanhuman

Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A4Q53GD3 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
SLC44A4Q53GD3 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
SLC44A4Q53GD3 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.3□□□□□ -1.88
SLC44A4Q53GD3 RNU6-336P-201ENST00000364891 107 ntBASIC3.3□□□□□ -1.88
SLC44A4Q53GD3 RNA5SP126-201ENST00000365092 109 ntBASIC3.3□□□□□ -1.88
SLC44A4Q53GD3 Y_RNA.452-201ENST00000384202 108 ntBASIC3.3□□□□□ -1.88
SLC44A4Q53GD3 MIR517A-201ENST00000385001 87 ntBASIC3.3□□□□□ -1.88
SLC44A4Q53GD3 RN7SKP284-201ENST00000411002 343 ntBASIC3.3□□□□□ -1.88
SLC44A4Q53GD3 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC3.3□□□□□ -1.88
SLC44A4Q53GD3 USMG5P1-201ENST00000425964 177 ntBASIC3.3□□□□□ -1.88
SLC44A4Q53GD3 AC096644.2-201ENST00000429278 159 ntBASIC3.3□□□□□ -1.88
SLC44A4Q53GD3 AC108059.2-201ENST00000434626 151 ntBASIC3.3□□□□□ -1.88
SLC44A4Q53GD3 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.3□□□□□ -1.88
SLC44A4Q53GD3 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.3□□□□□ -1.88
SLC44A4Q53GD3 MRPL42P6-201ENST00000486397 371 ntBASIC3.3□□□□□ -1.88
SLC44A4Q53GD3 MTND4LP22-201ENST00000508209 276 ntBASIC3.3□□□□□ -1.88
SLC44A4Q53GD3 RNU6-377P-201ENST00000515965 102 ntBASIC3.3□□□□□ -1.88
SLC44A4Q53GD3 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SLC44A4Q53GD3 AC104027.1-201ENST00000521887 300 ntBASIC3.3□□□□□ -1.88
SLC44A4Q53GD3 AC110588.1-201ENST00000559699 137 ntBASIC3.3□□□□□ -1.88
SLC44A4Q53GD3 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.3□□□□□ -1.88
SLC44A4Q53GD3 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC3.3□□□□□ -1.88
SLC44A4Q53GD3 UBL5P2-201ENST00000583788 219 ntBASIC3.3□□□□□ -1.88
SLC44A4Q53GD3 uc_338.1-201ENST00000612113 180 ntBASIC3.3□□□□□ -1.88
SLC44A4Q53GD3 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.3□□□□□ -1.88
SLC44A4Q53GD3 AC233263.6-201ENST00000631132 1963 ntBASIC3.3□□□□□ -1.88
SLC44A4Q53GD3 MAPK10-322ENST00000641485 4530 ntBASIC3.3□□□□□ -1.88
SLC44A4Q53GD3 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.3□□□□□ -1.88
SLC44A4Q53GD3 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC3.29□□□□□ -1.88
SLC44A4Q53GD3 DLEU2_6.3-201ENST00000340052 136 ntBASIC3.29□□□□□ -1.88
SLC44A4Q53GD3 Y_RNA.153-201ENST00000363615 91 ntBASIC3.29□□□□□ -1.88
SLC44A4Q53GD3 SNORA51.4-201ENST00000364993 124 ntBASIC3.29□□□□□ -1.88
SLC44A4Q53GD3 Y_RNA.401-201ENST00000383965 117 ntBASIC3.29□□□□□ -1.88
SLC44A4Q53GD3 SNORA7.4-201ENST00000384249 137 ntBASIC3.29□□□□□ -1.88
SLC44A4Q53GD3 SNORD116-20-201ENST00000384529 92 ntBASIC3.29□□□□□ -1.88
SLC44A4Q53GD3 RNU6-907P-201ENST00000390924 102 ntBASIC3.29□□□□□ -1.88
SLC44A4Q53GD3 HNRNPDLP1-201ENST00000412834 550 ntBASIC3.29□□□□□ -1.88
SLC44A4Q53GD3 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC3.29□□□□□ -1.88
SLC44A4Q53GD3 MRPS18CP6-201ENST00000423587 223 ntBASIC3.29□□□□□ -1.88
SLC44A4Q53GD3 AL645568.3-201ENST00000433683 316 ntBASIC3.29□□□□□ -1.88
SLC44A4Q53GD3 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC3.29□□□□□ -1.88
SLC44A4Q53GD3 AL161651.1-201ENST00000440882 223 ntBASIC3.29□□□□□ -1.88
SLC44A4Q53GD3 RPL23AP67-201ENST00000465341 474 ntBASIC3.29□□□□□ -1.88
SLC44A4Q53GD3 RPL23AP49-201ENST00000492925 468 ntBASIC3.29□□□□□ -1.88
SLC44A4Q53GD3 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.29□□□□□ -1.88
SLC44A4Q53GD3 SNORD116.3-201ENST00000517176 78 ntBASIC3.29□□□□□ -1.88
SLC44A4Q53GD3 AC009812.2-201ENST00000517657 457 ntBASIC3.29□□□□□ -1.88
SLC44A4Q53GD3 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.29□□□□□ -1.88
SLC44A4Q53GD3 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC3.29□□□□□ -1.88
SLC44A4Q53GD3 AC004817.2-201ENST00000561794 651 ntBASIC3.29□□□□□ -1.88
SLC44A4Q53GD3 MIR2682-201ENST00000580305 110 ntBASIC3.29□□□□□ -1.88
SLC44A4Q53GD3 AC092447.9-201ENST00000603395 144 ntBASIC3.29□□□□□ -1.88
SLC44A4Q53GD3 MIR3976-201ENST00000606807 139 ntBASIC3.29□□□□□ -1.88
SLC44A4Q53GD3 DLEU2_6.2-201ENST00000620994 136 ntBASIC3.29□□□□□ -1.88
SLC44A4Q53GD3 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
SLC44A4Q53GD3 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.29□□□□□ -1.88
SLC44A4Q53GD3 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
SLC44A4Q53GD3 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
SLC44A4Q53GD3 AC110774.1-201ENST00000623567 2018 ntBASIC3.29□□□□□ -1.88
SLC44A4Q53GD3 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
SLC44A4Q53GD3 AC091812.1-201ENST00000432235 1948 ntBASIC3.29□□□□□ -1.88
SLC44A4Q53GD3 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
SLC44A4Q53GD3 MIR449A-201ENST00000362113 91 ntBASIC3.28□□□□□ -1.88
SLC44A4Q53GD3 RNU1-70P-201ENST00000362618 164 ntBASIC3.28□□□□□ -1.88
SLC44A4Q53GD3 RNU6-238P-201ENST00000363313 106 ntBASIC3.28□□□□□ -1.88
SLC44A4Q53GD3 Y_RNA.428-201ENST00000384078 102 ntBASIC3.28□□□□□ -1.88
SLC44A4Q53GD3 RNU6-790P-201ENST00000384479 105 ntBASIC3.28□□□□□ -1.88
SLC44A4Q53GD3 RNU1-101P-201ENST00000391171 127 ntBASIC3.28□□□□□ -1.88
SLC44A4Q53GD3 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.28□□□□□ -1.88
SLC44A4Q53GD3 AL356968.1-201ENST00000416622 474 ntBASIC3.28□□□□□ -1.88
SLC44A4Q53GD3 AC114482.1-201ENST00000418010 247 ntBASIC3.28□□□□□ -1.88
SLC44A4Q53GD3 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC3.28□□□□□ -1.88
SLC44A4Q53GD3 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC3.28□□□□□ -1.88
SLC44A4Q53GD3 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC3.28□□□□□ -1.88
SLC44A4Q53GD3 AC013470.1-201ENST00000453438 462 ntBASIC3.28□□□□□ -1.88
SLC44A4Q53GD3 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.28□□□□□ -1.88
SLC44A4Q53GD3 PCMTD1P1-201ENST00000455560 355 ntBASIC3.28□□□□□ -1.88
SLC44A4Q53GD3 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC3.28□□□□□ -1.88
SLC44A4Q53GD3 AC015911.1-201ENST00000495111 156 ntBASIC3.28□□□□□ -1.88
SLC44A4Q53GD3 AKIRIN2P1-201ENST00000505898 352 ntBASIC3.28□□□□□ -1.88
SLC44A4Q53GD3 ACA59.2-201ENST00000517061 156 ntBASIC3.28□□□□□ -1.88
SLC44A4Q53GD3 AC109479.2-201ENST00000517842 174 ntBASIC3.28□□□□□ -1.88
SLC44A4Q53GD3 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.28□□□□□ -1.88
SLC44A4Q53GD3 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.28□□□□□ -1.88
SLC44A4Q53GD3 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC3.28□□□□□ -1.88
SLC44A4Q53GD3 AC024153.1-201ENST00000603103 365 ntBASIC3.28□□□□□ -1.88
SLC44A4Q53GD3 AP000787.2-201ENST00000604432 568 ntBASIC3.28□□□□□ -1.88
SLC44A4Q53GD3 AC018889.1-201ENST00000605372 397 ntBASIC3.28□□□□□ -1.88
SLC44A4Q53GD3 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.28□□□□□ -1.88
SLC44A4Q53GD3 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC3.28□□□□□ -1.88
SLC44A4Q53GD3 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.28□□□□□ -1.88
SLC44A4Q53GD3 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
SLC44A4Q53GD3 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
SLC44A4Q53GD3 AC017071.1-201ENST00000564407 2204 ntBASIC3.27□□□□□ -1.89
SLC44A4Q53GD3 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
SLC44A4Q53GD3 AC005592.1-201ENST00000566527 1640 ntBASIC3.27□□□□□ -1.89
SLC44A4Q53GD3 RPL9P7-201ENST00000330965 580 ntBASIC3.27□□□□□ -1.89
SLC44A4Q53GD3 Y_RNA.48-201ENST00000362710 103 ntBASIC3.27□□□□□ -1.89
SLC44A4Q53GD3 Y_RNA.149-201ENST00000363558 117 ntBASIC3.27□□□□□ -1.89
SLC44A4Q53GD3 RNU6-105P-201ENST00000363909 104 ntBASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 176.6 ms