Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
FOXA1P55317 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.25□□□□□ -2.21
FOXA1P55317 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.24□□□□□ -2.21
FOXA1P55317 RNU6-78P-201ENST00000362897 107 ntBASIC1.24□□□□□ -2.21
FOXA1P55317 RNU6-944P-201ENST00000364023 107 ntBASIC1.24□□□□□ -2.21
FOXA1P55317 RNU6-546P-201ENST00000383991 107 ntBASIC1.24□□□□□ -2.21
FOXA1P55317 RNU6-116P-201ENST00000384042 109 ntBASIC1.24□□□□□ -2.21
FOXA1P55317 RAP1BP3-201ENST00000407180 549 ntBASIC1.24□□□□□ -2.21
FOXA1P55317 RNU2-3P-201ENST00000410144 191 ntBASIC1.24□□□□□ -2.21
FOXA1P55317 OR6C66P-201ENST00000414917 930 ntBASIC1.24□□□□□ -2.21
FOXA1P55317 VN1R36P-201ENST00000414936 291 ntBASIC1.24□□□□□ -2.21
FOXA1P55317 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.24□□□□□ -2.21
FOXA1P55317 CYCSP46-201ENST00000423569 204 ntBASIC1.24□□□□□ -2.21
FOXA1P55317 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC1.24□□□□□ -2.21
FOXA1P55317 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC1.24□□□□□ -2.21
FOXA1P55317 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC1.24□□□□□ -2.21
FOXA1P55317 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC1.24□□□□□ -2.21
FOXA1P55317 AL357134.1-201ENST00000445848 426 ntBASIC1.24□□□□□ -2.21
FOXA1P55317 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.24□□□□□ -2.21
FOXA1P55317 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC1.24□□□□□ -2.21
FOXA1P55317 AL353752.1-201ENST00000454946 260 ntBASIC1.24□□□□□ -2.21
FOXA1P55317 SNRPFP4-201ENST00000456366 242 ntBASIC1.24□□□□□ -2.21
FOXA1P55317 RNU7-95P-201ENST00000459222 64 ntBASIC1.24□□□□□ -2.21
FOXA1P55317 TRMT112P2-201ENST00000512910 132 ntBASIC1.24□□□□□ -2.21
FOXA1P55317 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC1.24□□□□□ -2.21
FOXA1P55317 DUXAP5-201ENST00000529668 529 ntBASIC1.24□□□□□ -2.21
FOXA1P55317 AP002453.2-201ENST00000533503 320 ntBASIC1.24□□□□□ -2.21
FOXA1P55317 AC087883.1-201ENST00000551882 391 ntBASIC1.24□□□□□ -2.21
FOXA1P55317 AC109446.2-201ENST00000567872 497 ntBASIC1.24□□□□□ -2.21
FOXA1P55317 AC078795.2-201ENST00000602835 1252 ntBASIC1.24□□□□□ -2.21
FOXA1P55317 AC004908.3-201ENST00000610248 625 ntBASIC1.24□□□□□ -2.21
FOXA1P55317 AL159153.1-201ENST00000619688 317 ntBASIC1.24□□□□□ -2.21
FOXA1P55317 AC091304.6-201ENST00000619761 202 ntBASIC1.24□□□□□ -2.21
FOXA1P55317 AC007494.3-201ENST00000624660 743 ntBASIC1.24□□□□□ -2.21
FOXA1P55317 snoU2_19.1-201ENST00000362361 80 ntBASIC1.23□□□□□ -2.21
FOXA1P55317 Y_RNA.367-201ENST00000365544 101 ntBASIC1.23□□□□□ -2.21
FOXA1P55317 MIR1262-201ENST00000408276 93 ntBASIC1.23□□□□□ -2.21
FOXA1P55317 RNU6-607P-201ENST00000411283 108 ntBASIC1.23□□□□□ -2.21
FOXA1P55317 OR9R1P-201ENST00000412200 877 ntBASIC1.23□□□□□ -2.21
FOXA1P55317 HMGN1P14-201ENST00000412459 517 ntBASIC1.23□□□□□ -2.21
FOXA1P55317 BTF3L4P1-201ENST00000413813 468 ntBASIC1.23□□□□□ -2.21
FOXA1P55317 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC1.23□□□□□ -2.21
FOXA1P55317 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC1.23□□□□□ -2.21
FOXA1P55317 AC244636.1-201ENST00000421152 228 ntBASIC1.23□□□□□ -2.21
FOXA1P55317 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.23□□□□□ -2.21
FOXA1P55317 AC009961.2-201ENST00000435771 251 ntBASIC1.23□□□□□ -2.21
FOXA1P55317 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC1.23□□□□□ -2.21
FOXA1P55317 MTND2P4-201ENST00000445034 1004 ntBASIC1.23□□□□□ -2.21
FOXA1P55317 AC245102.2-201ENST00000448956 180 ntBASIC1.23□□□□□ -2.21
FOXA1P55317 GAPDHP17-201ENST00000449858 1001 ntBASIC1.23□□□□□ -2.21
FOXA1P55317 AL133217.1-201ENST00000450980 425 ntBASIC1.23□□□□□ -2.21
FOXA1P55317 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
FOXA1P55317 AL163540.1-201ENST00000485382 386 ntBASIC1.23□□□□□ -2.21
FOXA1P55317 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC1.23□□□□□ -2.21
FOXA1P55317 MTCYBP40-201ENST00000509390 1135 ntBASIC1.23□□□□□ -2.21
FOXA1P55317 AC008834.1-201ENST00000511612 175 ntBASIC1.23□□□□□ -2.21
FOXA1P55317 RNU6-965P-201ENST00000516721 96 ntBASIC1.23□□□□□ -2.21
FOXA1P55317 RNU6-410P-201ENST00000517006 107 ntBASIC1.23□□□□□ -2.21
FOXA1P55317 RN7SKP256-201ENST00000517201 314 ntBASIC1.23□□□□□ -2.21
FOXA1P55317 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC1.23□□□□□ -2.21
FOXA1P55317 AL161670.1-201ENST00000554348 137 ntBASIC1.23□□□□□ -2.21
FOXA1P55317 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC1.23□□□□□ -2.21
FOXA1P55317 MIR3915-201ENST00000578518 97 ntBASIC1.23□□□□□ -2.21
FOXA1P55317 MIR3682-201ENST00000581338 84 ntBASIC1.23□□□□□ -2.21
FOXA1P55317 AC098848.2-201ENST00000588023 330 ntBASIC1.23□□□□□ -2.21
FOXA1P55317 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.23□□□□□ -2.21
FOXA1P55317 AL512598.1-201ENST00000610158 273 ntBASIC1.23□□□□□ -2.21
FOXA1P55317 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC1.23□□□□□ -2.21
FOXA1P55317 AL359314.1-201ENST00000616913 261 ntBASIC1.23□□□□□ -2.21
FOXA1P55317 AL132822.1-201ENST00000617063 513 ntBASIC1.23□□□□□ -2.21
FOXA1P55317 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.23□□□□□ -2.21
FOXA1P55317 AC007792.1-201ENST00000623023 402 ntBASIC1.23□□□□□ -2.21
FOXA1P55317 AC011155.2-201ENST00000623202 216 ntBASIC1.23□□□□□ -2.21
FOXA1P55317 ZNF209P-201ENST00000593450 2304 ntBASIC1.23□□□□□ -2.21
FOXA1P55317 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.23□□□□□ -2.21
FOXA1P55317 MTND5P17-201ENST00000418405 1603 ntBASIC1.22□□□□□ -2.21
FOXA1P55317 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
FOXA1P55317 SNORA62.1-201ENST00000364287 154 ntBASIC1.22□□□□□ -2.21
FOXA1P55317 RNU5E-7P-201ENST00000365290 117 ntBASIC1.22□□□□□ -2.21
FOXA1P55317 RNU6-611P-201ENST00000384276 104 ntBASIC1.22□□□□□ -2.21
FOXA1P55317 SNORA40.3-201ENST00000390964 122 ntBASIC1.22□□□□□ -2.21
FOXA1P55317 RNU6-550P-201ENST00000391057 101 ntBASIC1.22□□□□□ -2.21
FOXA1P55317 MIR1287-201ENST00000408492 90 ntBASIC1.22□□□□□ -2.21
FOXA1P55317 RNU6-955P-201ENST00000410497 104 ntBASIC1.22□□□□□ -2.21
FOXA1P55317 CYCSP33-201ENST00000414485 327 ntBASIC1.22□□□□□ -2.21
FOXA1P55317 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.22□□□□□ -2.21
FOXA1P55317 AL365203.2-201ENST00000423444 196 ntBASIC1.22□□□□□ -2.21
FOXA1P55317 USP9YP18-201ENST00000425912 695 ntBASIC1.22□□□□□ -2.21
FOXA1P55317 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC1.22□□□□□ -2.21
FOXA1P55317 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.22□□□□□ -2.21
FOXA1P55317 AL022238.1-201ENST00000442557 355 ntBASIC1.22□□□□□ -2.21
FOXA1P55317 PRELID3BP1-201ENST00000457142 540 ntBASIC1.22□□□□□ -2.21
FOXA1P55317 RNU1-98P-201ENST00000458992 160 ntBASIC1.22□□□□□ -2.21
FOXA1P55317 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC1.22□□□□□ -2.21
FOXA1P55317 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.22□□□□□ -2.21
FOXA1P55317 AC087441.2-201ENST00000529141 262 ntBASIC1.22□□□□□ -2.21
FOXA1P55317 AC022616.8-201ENST00000533569 253 ntBASIC1.22□□□□□ -2.21
FOXA1P55317 MTATP6P24-201ENST00000576835 677 ntBASIC1.22□□□□□ -2.21
FOXA1P55317 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC1.22□□□□□ -2.21
FOXA1P55317 AL773524.1-201ENST00000614065 229 ntBASIC1.22□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms