Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RNU5E-8P-201ENST00000363502 116 ntBASIC-0.03□□□□□ -2.41
CUX1P39880 SNORD89-201ENST00000390981 114 ntBASIC-0.03□□□□□ -2.41
CUX1P39880 TAF13P2-201ENST00000416876 286 ntBASIC-0.03□□□□□ -2.41
CUX1P39880 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC-0.03□□□□□ -2.41
CUX1P39880 SNORA31.2-201ENST00000516019 134 ntBASIC-0.03□□□□□ -2.41
CUX1P39880 RNU2-53P-201ENST00000516257 147 ntBASIC-0.03□□□□□ -2.41
CUX1P39880 RNU6-165P-201ENST00000517170 99 ntBASIC-0.03□□□□□ -2.41
CUX1P39880 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC-0.03□□□□□ -2.41
CUX1P39880 IL7-206ENST00000520269 456 ntTSL 3 BASIC-0.03□□□□□ -2.41
CUX1P39880 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC-0.03□□□□□ -2.41
CUX1P39880 MIR548AX-201ENST00000580117 73 ntBASIC-0.03□□□□□ -2.41
CUX1P39880 AL020997.3-201ENST00000602843 359 ntBASIC-0.03□□□□□ -2.41
CUX1P39880 AC091805.2-201ENST00000603848 235 ntBASIC-0.03□□□□□ -2.41
CUX1P39880 AC107304.1-201ENST00000604229 296 ntBASIC-0.03□□□□□ -2.41
CUX1P39880 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC-0.03□□□□□ -2.41
CUX1P39880 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC-0.03□□□□□ -2.41
CUX1P39880 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC-0.03□□□□□ -2.41
CUX1P39880 DLEU2_6.3-201ENST00000340052 136 ntBASIC-0.03□□□□□ -2.41
CUX1P39880 RNU6-529P-201ENST00000363383 104 ntBASIC-0.03□□□□□ -2.41
CUX1P39880 Y_RNA.551-201ENST00000384661 102 ntBASIC-0.03□□□□□ -2.41
CUX1P39880 RNU6-331P-201ENST00000384724 107 ntBASIC-0.03□□□□□ -2.41
CUX1P39880 MIR525-201ENST00000384978 85 ntBASIC-0.03□□□□□ -2.41
CUX1P39880 RNA5SP111-201ENST00000411386 101 ntBASIC-0.03□□□□□ -2.41
CUX1P39880 PDCL2P1-201ENST00000419302 352 ntBASIC-0.03□□□□□ -2.41
CUX1P39880 AL451054.2-201ENST00000420896 202 ntBASIC-0.03□□□□□ -2.41
CUX1P39880 MTND1P28-201ENST00000435623 950 ntBASIC-0.03□□□□□ -2.41
CUX1P39880 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC-0.03□□□□□ -2.41
CUX1P39880 NDUFA5P7-201ENST00000452914 242 ntBASIC-0.03□□□□□ -2.41
CUX1P39880 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC-0.03□□□□□ -2.41
CUX1P39880 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC-0.03□□□□□ -2.41
CUX1P39880 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC-0.03□□□□□ -2.41
CUX1P39880 AC010460.2-201ENST00000509054 677 ntBASIC-0.03□□□□□ -2.41
CUX1P39880 AC079140.3-201ENST00000511111 550 ntBASIC-0.03□□□□□ -2.41
CUX1P39880 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC-0.03□□□□□ -2.41
CUX1P39880 AC104417.1-201ENST00000523974 751 ntBASIC-0.03□□□□□ -2.41
CUX1P39880 AL353997.4-201ENST00000586196 166 ntBASIC-0.03□□□□□ -2.41
CUX1P39880 AC090330.1-201ENST00000588646 764 ntBASIC-0.03□□□□□ -2.41
CUX1P39880 KATNBL1P5-201ENST00000605015 517 ntBASIC-0.03□□□□□ -2.41
CUX1P39880 AC107952.2-201ENST00000606048 486 ntBASIC-0.03□□□□□ -2.41
CUX1P39880 DLEU2_6.2-201ENST00000620994 136 ntBASIC-0.03□□□□□ -2.41
CUX1P39880 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC-0.04□□□□□ -2.42
CUX1P39880 RNU6-1274P-201ENST00000384557 107 ntBASIC-0.04□□□□□ -2.42
CUX1P39880 AL669831.1-202ENST00000428504 417 ntBASIC-0.04□□□□□ -2.42
CUX1P39880 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC-0.04□□□□□ -2.42
CUX1P39880 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC-0.04□□□□□ -2.42
CUX1P39880 AC233266.1-201ENST00000454518 96 ntBASIC-0.04□□□□□ -2.42
CUX1P39880 AC048334.1-201ENST00000477975 159 ntBASIC-0.04□□□□□ -2.42
CUX1P39880 MTND1P3-201ENST00000484956 952 ntBASIC-0.04□□□□□ -2.42
CUX1P39880 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC-0.04□□□□□ -2.42
CUX1P39880 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC-0.04□□□□□ -2.42
CUX1P39880 AC008628.1-201ENST00000508663 265 ntBASIC-0.04□□□□□ -2.42
CUX1P39880 SNORA68.3-201ENST00000515906 83 ntBASIC-0.04□□□□□ -2.42
CUX1P39880 RN7SKP12-201ENST00000516275 143 ntBASIC-0.04□□□□□ -2.42
CUX1P39880 BPTFP1-201ENST00000579209 492 ntBASIC-0.04□□□□□ -2.42
CUX1P39880 AC060771.1-201ENST00000582031 164 ntBASIC-0.04□□□□□ -2.42
CUX1P39880 AL355598.1-201ENST00000604169 202 ntBASIC-0.04□□□□□ -2.42
CUX1P39880 BNIP3P31-201ENST00000604515 566 ntBASIC-0.04□□□□□ -2.42
CUX1P39880 AC242852.1-201ENST00000612151 96 ntBASIC-0.04□□□□□ -2.42
CUX1P39880 AC244015.1-201ENST00000622301 99 ntBASIC-0.04□□□□□ -2.42
CUX1P39880 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC-0.04□□□□□ -2.42
CUX1P39880 RNU6-944P-201ENST00000364023 107 ntBASIC-0.05□□□□□ -2.42
CUX1P39880 MIR1468-201ENST00000410600 86 ntBASIC-0.05□□□□□ -2.42
CUX1P39880 AC138623.1-201ENST00000418060 216 ntBASIC-0.05□□□□□ -2.42
CUX1P39880 BTF3L4P3-201ENST00000418879 476 ntBASIC-0.05□□□□□ -2.42
CUX1P39880 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC-0.05□□□□□ -2.42
CUX1P39880 AL035398.1-201ENST00000430869 322 ntBASIC-0.05□□□□□ -2.42
CUX1P39880 RPS27AP8-201ENST00000452665 445 ntBASIC-0.05□□□□□ -2.42
CUX1P39880 RNA5SP481-201ENST00000516814 122 ntBASIC-0.05□□□□□ -2.42
CUX1P39880 RN7SKP258-201ENST00000517151 304 ntBASIC-0.05□□□□□ -2.42
CUX1P39880 IGJP1-201ENST00000522682 475 ntBASIC-0.05□□□□□ -2.42
CUX1P39880 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC-0.05□□□□□ -2.42
CUX1P39880 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC-0.05□□□□□ -2.42
CUX1P39880 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC-0.05□□□□□ -2.42
CUX1P39880 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC-0.05□□□□□ -2.42
CUX1P39880 AC025627.3-201ENST00000582078 182 ntBASIC-0.05□□□□□ -2.42
CUX1P39880 AL356157.2-201ENST00000605122 111 ntBASIC-0.05□□□□□ -2.42
CUX1P39880 AL158211.4-201ENST00000606988 584 ntBASIC-0.05□□□□□ -2.42
CUX1P39880 AL360219.1-201ENST00000610230 366 ntBASIC-0.05□□□□□ -2.42
CUX1P39880 ZNF849P-201ENST00000594711 1566 ntBASIC-0.05□□□□□ -2.42
CUX1P39880 RNU1-39P-201ENST00000383897 165 ntBASIC-0.06□□□□□ -2.42
CUX1P39880 CALM2P3-201ENST00000400429 449 ntBASIC-0.06□□□□□ -2.42
CUX1P39880 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC-0.06□□□□□ -2.42
CUX1P39880 MTND4P20-201ENST00000424125 869 ntBASIC-0.06□□□□□ -2.42
CUX1P39880 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC-0.06□□□□□ -2.42
CUX1P39880 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC-0.06□□□□□ -2.42
CUX1P39880 AC104982.1-201ENST00000478775 574 ntBASIC-0.06□□□□□ -2.42
CUX1P39880 WDR78-207ENST00000488333 613 ntTSL 3 BASIC-0.06□□□□□ -2.42
CUX1P39880 SCARNA16.5-201ENST00000517114 183 ntBASIC-0.06□□□□□ -2.42
CUX1P39880 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC-0.06□□□□□ -2.42
CUX1P39880 AL356057.1-201ENST00000533798 831 ntBASIC-0.06□□□□□ -2.42
CUX1P39880 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC-0.06□□□□□ -2.42
CUX1P39880 MIR3678-201ENST00000578455 94 ntBASIC-0.06□□□□□ -2.42
CUX1P39880 RNU6-87P-201ENST00000607561 108 ntBASIC-0.06□□□□□ -2.42
CUX1P39880 OR5AK4P-201ENST00000635912 903 ntBASIC-0.06□□□□□ -2.42
CUX1P39880 AC010615.1-201ENST00000594254 1764 ntBASIC-0.06□□□□□ -2.42
CUX1P39880 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC-0.07□□□□□ -2.42
CUX1P39880 RNU6-1305P-201ENST00000364353 104 ntBASIC-0.07□□□□□ -2.42
CUX1P39880 RNA5SP259-201ENST00000365541 109 ntBASIC-0.07□□□□□ -2.42
CUX1P39880 RNU6V-201ENST00000384105 107 ntBASIC-0.07□□□□□ -2.42
CUX1P39880 DHFRP6-201ENST00000401776 268 ntBASIC-0.07□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms