Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 Y_RNA.40-201ENST00000362645 93 ntBASIC2.75□□□□□ -1.97
HOXC11O43248 RNU6-1141P-201ENST00000364520 107 ntBASIC2.75□□□□□ -1.97
HOXC11O43248 Y_RNA.414-201ENST00000384011 101 ntBASIC2.75□□□□□ -1.97
HOXC11O43248 AL162578.1-201ENST00000406202 378 ntBASIC2.75□□□□□ -1.97
HOXC11O43248 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.75□□□□□ -1.97
HOXC11O43248 SNAP23P1-201ENST00000433229 246 ntBASIC2.75□□□□□ -1.97
HOXC11O43248 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2.75□□□□□ -1.97
HOXC11O43248 RPL9P9-202ENST00000466501 579 ntBASIC2.75□□□□□ -1.97
HOXC11O43248 AC008571.1-201ENST00000467232 300 ntBASIC2.75□□□□□ -1.97
HOXC11O43248 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC2.75□□□□□ -1.97
HOXC11O43248 AC010486.1-201ENST00000511793 424 ntBASIC2.75□□□□□ -1.97
HOXC11O43248 RNA5SP282-201ENST00000516355 108 ntBASIC2.75□□□□□ -1.97
HOXC11O43248 RNU6-826P-201ENST00000516827 104 ntBASIC2.75□□□□□ -1.97
HOXC11O43248 RNU6-586P-201ENST00000517265 104 ntBASIC2.75□□□□□ -1.97
HOXC11O43248 RNU1-104P-201ENST00000517280 175 ntBASIC2.75□□□□□ -1.97
HOXC11O43248 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC2.75□□□□□ -1.97
HOXC11O43248 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC2.75□□□□□ -1.97
HOXC11O43248 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC2.75□□□□□ -1.97
HOXC11O43248 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC2.75□□□□□ -1.97
HOXC11O43248 AL713866.2-201ENST00000603579 219 ntBASIC2.75□□□□□ -1.97
HOXC11O43248 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.75□□□□□ -1.97
HOXC11O43248 FAM157A-202ENST00000615155 405 ntBASIC2.75□□□□□ -1.97
HOXC11O43248 MIR6817-201ENST00000615588 66 ntBASIC2.75□□□□□ -1.97
HOXC11O43248 AC009233.1-201ENST00000616477 371 ntBASIC2.75□□□□□ -1.97
HOXC11O43248 IGHVIII-44-202ENST00000636235 289 ntBASIC2.75□□□□□ -1.97
HOXC11O43248 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
HOXC11O43248 MAPK10-266ENST00000641066 6555 ntBASIC2.74□□□□□ -1.97
HOXC11O43248 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.74□□□□□ -1.97
HOXC11O43248 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.74□□□□□ -1.97
HOXC11O43248 RNU1-72P-201ENST00000362976 153 ntBASIC2.74□□□□□ -1.97
HOXC11O43248 RNA5SP393-201ENST00000363423 117 ntBASIC2.74□□□□□ -1.97
HOXC11O43248 RNA5SP68-201ENST00000363885 119 ntBASIC2.74□□□□□ -1.97
HOXC11O43248 RNU6-43P-201ENST00000384302 107 ntBASIC2.74□□□□□ -1.97
HOXC11O43248 RNU6-933P-201ENST00000384424 107 ntBASIC2.74□□□□□ -1.97
HOXC11O43248 MIR181A2-201ENST00000384863 110 ntBASIC2.74□□□□□ -1.97
HOXC11O43248 BTF3L4P2-201ENST00000392798 346 ntBASIC2.74□□□□□ -1.97
HOXC11O43248 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC2.74□□□□□ -1.97
HOXC11O43248 VN1R36P-201ENST00000414936 291 ntBASIC2.74□□□□□ -1.97
HOXC11O43248 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.74□□□□□ -1.97
HOXC11O43248 AL139413.1-201ENST00000421309 217 ntBASIC2.74□□□□□ -1.97
HOXC11O43248 AL590556.1-201ENST00000423231 483 ntBASIC2.74□□□□□ -1.97
HOXC11O43248 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC2.74□□□□□ -1.97
HOXC11O43248 FGF7P6-202ENST00000451282 293 ntBASIC2.74□□□□□ -1.97
HOXC11O43248 AC114801.2-201ENST00000503825 781 ntBASIC2.74□□□□□ -1.97
HOXC11O43248 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC2.74□□□□□ -1.97
HOXC11O43248 AC092436.3-201ENST00000511788 257 ntBASIC2.74□□□□□ -1.97
HOXC11O43248 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.74□□□□□ -1.97
HOXC11O43248 SNORA9.3-201ENST00000516383 129 ntBASIC2.74□□□□□ -1.97
HOXC11O43248 RNU6-1314P-201ENST00000517139 104 ntBASIC2.74□□□□□ -1.97
HOXC11O43248 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.74□□□□□ -1.97
HOXC11O43248 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.74□□□□□ -1.97
HOXC11O43248 HSPE1P4-201ENST00000550617 308 ntBASIC2.74□□□□□ -1.97
HOXC11O43248 AC007375.1-201ENST00000554513 578 ntBASIC2.74□□□□□ -1.97
HOXC11O43248 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC2.74□□□□□ -1.97
HOXC11O43248 AP001836.1-201ENST00000604675 523 ntBASIC2.74□□□□□ -1.97
HOXC11O43248 AC009033.1-201ENST00000624279 431 ntBASIC2.74□□□□□ -1.97
HOXC11O43248 AC243829.7-201ENST00000633081 225 ntBASIC2.74□□□□□ -1.97
HOXC11O43248 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
HOXC11O43248 MTND4P23-201ENST00000447723 1363 ntBASIC2.74□□□□□ -1.97
HOXC11O43248 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.73□□□□□ -1.97
HOXC11O43248 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
HOXC11O43248 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
HOXC11O43248 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.73□□□□□ -1.97
HOXC11O43248 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.73□□□□□ -1.97
HOXC11O43248 RNU4-56P-201ENST00000364700 142 ntBASIC2.73□□□□□ -1.97
HOXC11O43248 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC2.73□□□□□ -1.97
HOXC11O43248 SNORA32.2-201ENST00000384049 122 ntBASIC2.73□□□□□ -1.97
HOXC11O43248 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.73□□□□□ -1.97
HOXC11O43248 AC007064.1-201ENST00000412238 351 ntBASIC2.73□□□□□ -1.97
HOXC11O43248 AIMP1P2-201ENST00000425294 312 ntBASIC2.73□□□□□ -1.97
HOXC11O43248 AC244670.1-201ENST00000436879 112 ntBASIC2.73□□□□□ -1.97
HOXC11O43248 RPS29P6-201ENST00000438196 145 ntBASIC2.73□□□□□ -1.97
HOXC11O43248 USP9YP8-201ENST00000441913 500 ntBASIC2.73□□□□□ -1.97
HOXC11O43248 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC2.73□□□□□ -1.97
HOXC11O43248 AL513328.1-201ENST00000446460 224 ntBASIC2.73□□□□□ -1.97
HOXC11O43248 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC2.73□□□□□ -1.97
HOXC11O43248 AMD1P1-201ENST00000457220 922 ntBASIC2.73□□□□□ -1.97
HOXC11O43248 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.73□□□□□ -1.97
HOXC11O43248 AC096745.1-201ENST00000509945 370 ntBASIC2.73□□□□□ -1.97
HOXC11O43248 RNU6-612P-201ENST00000516909 102 ntBASIC2.73□□□□□ -1.97
HOXC11O43248 MIR4658-201ENST00000584344 65 ntBASIC2.73□□□□□ -1.97
HOXC11O43248 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
HOXC11O43248 AC006504.8-201ENST00000621046 635 ntBASIC2.73□□□□□ -1.97
HOXC11O43248 AP000560.1-201ENST00000624150 1937 ntBASIC2.72□□□□□ -1.97
HOXC11O43248 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC2.72□□□□□ -1.97
HOXC11O43248 RNU6-1032P-201ENST00000384100 107 ntBASIC2.72□□□□□ -1.97
HOXC11O43248 RNU6-1013P-201ENST00000384180 107 ntBASIC2.72□□□□□ -1.97
HOXC11O43248 MIR29B2-201ENST00000385055 81 ntBASIC2.72□□□□□ -1.97
HOXC11O43248 AP000275.1-201ENST00000411943 390 ntBASIC2.72□□□□□ -1.97
HOXC11O43248 AL139415.2-201ENST00000431968 163 ntBASIC2.72□□□□□ -1.97
HOXC11O43248 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.72□□□□□ -1.97
HOXC11O43248 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC2.72□□□□□ -1.97
HOXC11O43248 MTCO1P29-201ENST00000496868 288 ntBASIC2.72□□□□□ -1.97
HOXC11O43248 AC016632.1-201ENST00000503994 196 ntBASIC2.72□□□□□ -1.97
HOXC11O43248 AC022447.4-201ENST00000504053 364 ntBASIC2.72□□□□□ -1.97
HOXC11O43248 RNU6-256P-201ENST00000516747 97 ntBASIC2.72□□□□□ -1.97
HOXC11O43248 AF235103.2-201ENST00000525753 346 ntBASIC2.72□□□□□ -1.97
HOXC11O43248 ELOCP31-201ENST00000540463 467 ntBASIC2.72□□□□□ -1.97
HOXC11O43248 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.72□□□□□ -1.97
HOXC11O43248 AC004486.1-201ENST00000546846 233 ntBASIC2.72□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms