Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 RNU6-189P-201ENST00000516120 101 ntBASIC2.46□□□□□ -2.02
CPSF3Q9UKF6 SNORD60.2-201ENST00000516883 86 ntBASIC2.46□□□□□ -2.02
CPSF3Q9UKF6 ZNF519P2-201ENST00000557032 169 ntBASIC2.46□□□□□ -2.02
CPSF3Q9UKF6 AC090897.2-201ENST00000581715 130 ntBASIC2.46□□□□□ -2.02
CPSF3Q9UKF6 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.46□□□□□ -2.02
CPSF3Q9UKF6 AC092807.2-201ENST00000609367 243 ntBASIC2.46□□□□□ -2.02
CPSF3Q9UKF6 U4.5-201ENST00000617137 123 ntBASIC2.46□□□□□ -2.02
CPSF3Q9UKF6 AC103705.1-201ENST00000619013 241 ntBASIC2.46□□□□□ -2.02
CPSF3Q9UKF6 AC097372.5-201ENST00000623665 376 ntBASIC2.46□□□□□ -2.02
CPSF3Q9UKF6 OR4G1P-203ENST00000641984 1631 ntBASIC2.46□□□□□ -2.02
CPSF3Q9UKF6 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
CPSF3Q9UKF6 ZNF658B-202ENST00000615961 3375 ntBASIC2.45□□□□□ -2.02
CPSF3Q9UKF6 RNY3P3-201ENST00000363816 102 ntBASIC2.45□□□□□ -2.02
CPSF3Q9UKF6 RNU6-522P-201ENST00000364497 107 ntBASIC2.45□□□□□ -2.02
CPSF3Q9UKF6 AF274854.1-201ENST00000413236 615 ntBASIC2.45□□□□□ -2.02
CPSF3Q9UKF6 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.45□□□□□ -2.02
CPSF3Q9UKF6 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.45□□□□□ -2.02
CPSF3Q9UKF6 AC012308.1-201ENST00000451232 178 ntBASIC2.45□□□□□ -2.02
CPSF3Q9UKF6 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC2.45□□□□□ -2.02
CPSF3Q9UKF6 RPL38P4-201ENST00000502376 214 ntBASIC2.45□□□□□ -2.02
CPSF3Q9UKF6 AC091885.1-201ENST00000506658 268 ntBASIC2.45□□□□□ -2.02
CPSF3Q9UKF6 HMGB3P3-201ENST00000510526 400 ntBASIC2.45□□□□□ -2.02
CPSF3Q9UKF6 SNORA14.1-201ENST00000516113 141 ntBASIC2.45□□□□□ -2.02
CPSF3Q9UKF6 AC109635.3-201ENST00000529536 185 ntBASIC2.45□□□□□ -2.02
CPSF3Q9UKF6 MYL12BP1-201ENST00000569826 507 ntBASIC2.45□□□□□ -2.02
CPSF3Q9UKF6 MIR3941-201ENST00000582572 103 ntBASIC2.45□□□□□ -2.02
CPSF3Q9UKF6 AC010525.2-201ENST00000590920 195 ntBASIC2.45□□□□□ -2.02
CPSF3Q9UKF6 AC092747.3-201ENST00000603769 301 ntBASIC2.45□□□□□ -2.02
CPSF3Q9UKF6 Z82243.1-201ENST00000609432 473 ntBASIC2.45□□□□□ -2.02
CPSF3Q9UKF6 AL160394.1-201ENST00000624765 724 ntBASIC2.45□□□□□ -2.02
CPSF3Q9UKF6 MIR203B-201ENST00000636080 86 ntBASIC2.45□□□□□ -2.02
CPSF3Q9UKF6 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
CPSF3Q9UKF6 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
CPSF3Q9UKF6 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.45□□□□□ -2.02
CPSF3Q9UKF6 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.44□□□□□ -2.02
CPSF3Q9UKF6 Y_RNA.9-201ENST00000362354 101 ntBASIC2.44□□□□□ -2.02
CPSF3Q9UKF6 RNU6-1010P-201ENST00000362757 107 ntBASIC2.44□□□□□ -2.02
CPSF3Q9UKF6 RNU6-428P-201ENST00000362942 107 ntBASIC2.44□□□□□ -2.02
CPSF3Q9UKF6 RNY4P14-201ENST00000363656 96 ntBASIC2.44□□□□□ -2.02
CPSF3Q9UKF6 RNU6-105P-201ENST00000363909 104 ntBASIC2.44□□□□□ -2.02
CPSF3Q9UKF6 Y_RNA.231-201ENST00000364358 102 ntBASIC2.44□□□□□ -2.02
CPSF3Q9UKF6 Y_RNA.402-201ENST00000383972 102 ntBASIC2.44□□□□□ -2.02
CPSF3Q9UKF6 Y_RNA.450-201ENST00000384198 113 ntBASIC2.44□□□□□ -2.02
CPSF3Q9UKF6 MIR221-201ENST00000385135 110 ntBASIC2.44□□□□□ -2.02
CPSF3Q9UKF6 AL117339.3-201ENST00000418733 162 ntBASIC2.44□□□□□ -2.02
CPSF3Q9UKF6 AL356320.1-201ENST00000429616 163 ntBASIC2.44□□□□□ -2.02
CPSF3Q9UKF6 AC007969.2-201ENST00000441891 191 ntBASIC2.44□□□□□ -2.02
CPSF3Q9UKF6 AC013470.1-201ENST00000453438 462 ntBASIC2.44□□□□□ -2.02
CPSF3Q9UKF6 RNU6-1208P-201ENST00000459588 107 ntBASIC2.44□□□□□ -2.02
CPSF3Q9UKF6 AC082651.2-201ENST00000496833 166 ntBASIC2.44□□□□□ -2.02
CPSF3Q9UKF6 Y_RNA.654-201ENST00000497848 106 ntBASIC2.44□□□□□ -2.02
CPSF3Q9UKF6 AC079140.5-201ENST00000507882 310 ntBASIC2.44□□□□□ -2.02
CPSF3Q9UKF6 NAF1-205ENST00000509434 385 ntTSL 3 BASIC2.44□□□□□ -2.02
CPSF3Q9UKF6 AF213884.2-201ENST00000510417 903 ntBASIC2.44□□□□□ -2.02
CPSF3Q9UKF6 SNRPGP18-201ENST00000553000 214 ntBASIC2.44□□□□□ -2.02
CPSF3Q9UKF6 RNU6-89P-201ENST00000606519 100 ntBASIC2.44□□□□□ -2.02
CPSF3Q9UKF6 SNORD14A-201ENST00000606526 91 ntBASIC2.44□□□□□ -2.02
CPSF3Q9UKF6 AC004492.1-201ENST00000607036 742 ntBASIC2.44□□□□□ -2.02
CPSF3Q9UKF6 AC096772.1-201ENST00000609146 564 ntBASIC2.44□□□□□ -2.02
CPSF3Q9UKF6 DISC2.1-201ENST00000612827 205 ntBASIC2.44□□□□□ -2.02
CPSF3Q9UKF6 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC2.44□□□□□ -2.02
CPSF3Q9UKF6 AC090517.2-201ENST00000614966 680 ntBASIC2.44□□□□□ -2.02
CPSF3Q9UKF6 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.44□□□□□ -2.02
CPSF3Q9UKF6 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.43□□□□□ -2.02
CPSF3Q9UKF6 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
CPSF3Q9UKF6 Y_RNA.6-201ENST00000362350 114 ntBASIC2.43□□□□□ -2.02
CPSF3Q9UKF6 SNORD114-19-201ENST00000363072 75 ntBASIC2.43□□□□□ -2.02
CPSF3Q9UKF6 RNU6-336P-201ENST00000364891 107 ntBASIC2.43□□□□□ -2.02
CPSF3Q9UKF6 RNU4-12P-201ENST00000365233 139 ntBASIC2.43□□□□□ -2.02
CPSF3Q9UKF6 SNORA80E-201ENST00000384744 137 ntBASIC2.43□□□□□ -2.02
CPSF3Q9UKF6 MIR144-201ENST00000384886 86 ntBASIC2.43□□□□□ -2.02
CPSF3Q9UKF6 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.43□□□□□ -2.02
CPSF3Q9UKF6 AC138623.1-201ENST00000418060 216 ntBASIC2.43□□□□□ -2.02
CPSF3Q9UKF6 EIF4EP4-201ENST00000424916 578 ntBASIC2.43□□□□□ -2.02
CPSF3Q9UKF6 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC2.43□□□□□ -2.02
CPSF3Q9UKF6 AC124916.1-201ENST00000444020 547 ntBASIC2.43□□□□□ -2.02
CPSF3Q9UKF6 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC2.43□□□□□ -2.02
CPSF3Q9UKF6 NDUFAF4P4-201ENST00000454883 502 ntBASIC2.43□□□□□ -2.02
CPSF3Q9UKF6 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.43□□□□□ -2.02
CPSF3Q9UKF6 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.43□□□□□ -2.02
CPSF3Q9UKF6 AC069113.1-201ENST00000517763 267 ntBASIC2.43□□□□□ -2.02
CPSF3Q9UKF6 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC2.43□□□□□ -2.02
CPSF3Q9UKF6 CYCSP27-201ENST00000527643 293 ntBASIC2.43□□□□□ -2.02
CPSF3Q9UKF6 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC2.43□□□□□ -2.02
CPSF3Q9UKF6 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.43□□□□□ -2.02
CPSF3Q9UKF6 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC2.43□□□□□ -2.02
CPSF3Q9UKF6 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.43□□□□□ -2.02
CPSF3Q9UKF6 AC078814.3-201ENST00000553036 491 ntBASIC2.43□□□□□ -2.02
CPSF3Q9UKF6 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.43□□□□□ -2.02
CPSF3Q9UKF6 AC026464.5-201ENST00000562497 722 ntBASIC2.43□□□□□ -2.02
CPSF3Q9UKF6 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.43□□□□□ -2.02
CPSF3Q9UKF6 RNU6-85P-201ENST00000605989 107 ntBASIC2.43□□□□□ -2.02
CPSF3Q9UKF6 RMST_3.1-201ENST00000611651 109 ntBASIC2.43□□□□□ -2.02
CPSF3Q9UKF6 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC2.43□□□□□ -2.02
CPSF3Q9UKF6 AC073869.6-201ENST00000640656 341 ntBASIC2.43□□□□□ -2.02
CPSF3Q9UKF6 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
CPSF3Q9UKF6 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
CPSF3Q9UKF6 Y_RNA.40-201ENST00000362645 93 ntBASIC2.42□□□□□ -2.02
CPSF3Q9UKF6 RNU6-529P-201ENST00000363383 104 ntBASIC2.42□□□□□ -2.02
CPSF3Q9UKF6 Y_RNA.256-201ENST00000364594 104 ntBASIC2.42□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 181.7 ms