Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 MTATP6P23-201ENST00000440153 476 ntBASIC2.29□□□□□ -2.04
NKX3-1Q99801 AL135938.1-201ENST00000443141 297 ntBASIC2.29□□□□□ -2.04
NKX3-1Q99801 RPL30P12-201ENST00000474666 353 ntBASIC2.29□□□□□ -2.04
NKX3-1Q99801 RPL36AP48-201ENST00000485521 314 ntBASIC2.29□□□□□ -2.04
NKX3-1Q99801 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC2.29□□□□□ -2.04
NKX3-1Q99801 RPPH1-2P-201ENST00000516688 293 ntBASIC2.29□□□□□ -2.04
NKX3-1Q99801 RNU7-30P-201ENST00000516835 62 ntBASIC2.29□□□□□ -2.04
NKX3-1Q99801 SCARNA11.3-201ENST00000517276 130 ntBASIC2.29□□□□□ -2.04
NKX3-1Q99801 AC109479.2-201ENST00000517842 174 ntBASIC2.29□□□□□ -2.04
NKX3-1Q99801 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.29□□□□□ -2.04
NKX3-1Q99801 AC243972.3-201ENST00000539655 198 ntBASIC2.29□□□□□ -2.04
NKX3-1Q99801 AC026371.1-201ENST00000551867 419 ntBASIC2.29□□□□□ -2.04
NKX3-1Q99801 TRAV32-201ENST00000553993 340 ntBASIC2.29□□□□□ -2.04
NKX3-1Q99801 AC090616.3-201ENST00000582184 217 ntBASIC2.29□□□□□ -2.04
NKX3-1Q99801 AC005730.3-201ENST00000583067 366 ntBASIC2.29□□□□□ -2.04
NKX3-1Q99801 ELOCP29-201ENST00000588193 334 ntBASIC2.29□□□□□ -2.04
NKX3-1Q99801 AC104237.2-201ENST00000612456 443 ntBASIC2.29□□□□□ -2.04
NKX3-1Q99801 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.29□□□□□ -2.04
NKX3-1Q99801 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
NKX3-1Q99801 AC244517.12-201ENST00000623581 663 ntBASIC2.29□□□□□ -2.04
NKX3-1Q99801 FO624990.1-201ENST00000636373 85 ntBASIC2.29□□□□□ -2.04
NKX3-1Q99801 MIR3529-201ENST00000637713 78 ntBASIC2.29□□□□□ -2.04
NKX3-1Q99801 AC241585.2-209ENST00000638217 143 ntBASIC2.29□□□□□ -2.04
NKX3-1Q99801 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.29□□□□□ -2.04
NKX3-1Q99801 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.28□□□□□ -2.04
NKX3-1Q99801 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.28□□□□□ -2.04
NKX3-1Q99801 Y_RNA.135-201ENST00000363439 95 ntBASIC2.28□□□□□ -2.04
NKX3-1Q99801 RNU6-214P-201ENST00000384130 107 ntBASIC2.28□□□□□ -2.04
NKX3-1Q99801 Y_RNA.500-201ENST00000384466 111 ntBASIC2.28□□□□□ -2.04
NKX3-1Q99801 MIR218-1-201ENST00000384999 110 ntBASIC2.28□□□□□ -2.04
NKX3-1Q99801 RNU6-510P-201ENST00000391239 108 ntBASIC2.28□□□□□ -2.04
NKX3-1Q99801 RPS29P13-201ENST00000402041 169 ntBASIC2.28□□□□□ -2.04
NKX3-1Q99801 MTCO3P46-201ENST00000425787 232 ntBASIC2.28□□□□□ -2.04
NKX3-1Q99801 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
NKX3-1Q99801 AC092427.1-202ENST00000430569 476 ntBASIC2.28□□□□□ -2.04
NKX3-1Q99801 AC105272.1-201ENST00000438604 198 ntBASIC2.28□□□□□ -2.04
NKX3-1Q99801 MTCO2P3-201ENST00000442543 421 ntBASIC2.28□□□□□ -2.04
NKX3-1Q99801 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
NKX3-1Q99801 PPP1R2P5-201ENST00000457256 603 ntBASIC2.28□□□□□ -2.04
NKX3-1Q99801 AC006026.2-201ENST00000457376 180 ntBASIC2.28□□□□□ -2.04
NKX3-1Q99801 RNU7-187P-201ENST00000458985 68 ntBASIC2.28□□□□□ -2.04
NKX3-1Q99801 UBE2DNL-203ENST00000474922 222 ntBASIC2.28□□□□□ -2.04
NKX3-1Q99801 SRIP1-201ENST00000489235 288 ntBASIC2.28□□□□□ -2.04
NKX3-1Q99801 AC008526.1-201ENST00000509149 338 ntBASIC2.28□□□□□ -2.04
NKX3-1Q99801 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.28□□□□□ -2.04
NKX3-1Q99801 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2.28□□□□□ -2.04
NKX3-1Q99801 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC2.28□□□□□ -2.04
NKX3-1Q99801 AC134698.4-201ENST00000523451 826 ntBASIC2.28□□□□□ -2.04
NKX3-1Q99801 AC118273.2-201ENST00000532092 465 ntBASIC2.28□□□□□ -2.04
NKX3-1Q99801 AC087241.2-201ENST00000535801 324 ntBASIC2.28□□□□□ -2.04
NKX3-1Q99801 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.28□□□□□ -2.04
NKX3-1Q99801 AL121579.1-201ENST00000555129 305 ntBASIC2.28□□□□□ -2.04
NKX3-1Q99801 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC2.28□□□□□ -2.04
NKX3-1Q99801 MIR4446-201ENST00000578505 67 ntBASIC2.28□□□□□ -2.04
NKX3-1Q99801 AC100830.2-201ENST00000581636 240 ntBASIC2.28□□□□□ -2.04
NKX3-1Q99801 AC023043.2-201ENST00000589678 1026 ntBASIC2.28□□□□□ -2.04
NKX3-1Q99801 RPS15AP11-201ENST00000594193 385 ntBASIC2.28□□□□□ -2.04
NKX3-1Q99801 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.28□□□□□ -2.04
NKX3-1Q99801 AC009314.1-201ENST00000603871 304 ntBASIC2.28□□□□□ -2.04
NKX3-1Q99801 AL033523.1-201ENST00000605153 153 ntBASIC2.28□□□□□ -2.04
NKX3-1Q99801 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.28□□□□□ -2.04
NKX3-1Q99801 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC2.28□□□□□ -2.04
NKX3-1Q99801 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.28□□□□□ -2.04
NKX3-1Q99801 uc_338.14-201ENST00000613162 166 ntBASIC2.28□□□□□ -2.04
NKX3-1Q99801 WT1-AS_8.1-201ENST00000615200 275 ntBASIC2.28□□□□□ -2.04
NKX3-1Q99801 AC022306.2-201ENST00000617563 647 ntBASIC2.28□□□□□ -2.04
NKX3-1Q99801 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC2.28□□□□□ -2.04
NKX3-1Q99801 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.28□□□□□ -2.04
NKX3-1Q99801 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
NKX3-1Q99801 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.05
NKX3-1Q99801 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
NKX3-1Q99801 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
NKX3-1Q99801 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.27□□□□□ -2.05
NKX3-1Q99801 Y_RNA.40-201ENST00000362645 93 ntBASIC2.27□□□□□ -2.05
NKX3-1Q99801 RNU6-562P-201ENST00000362731 107 ntBASIC2.27□□□□□ -2.05
NKX3-1Q99801 Y_RNA.151-201ENST00000363566 112 ntBASIC2.27□□□□□ -2.05
NKX3-1Q99801 Y_RNA.184-201ENST00000363884 108 ntBASIC2.27□□□□□ -2.05
NKX3-1Q99801 RNU6-1317P-201ENST00000364582 104 ntBASIC2.27□□□□□ -2.05
NKX3-1Q99801 SET-203ENST00000372688 801 ntTSL 2 BASIC2.27□□□□□ -2.05
NKX3-1Q99801 MIR544A-201ENST00000384855 91 ntBASIC2.27□□□□□ -2.05
NKX3-1Q99801 RNU6-325P-201ENST00000411132 105 ntBASIC2.27□□□□□ -2.05
NKX3-1Q99801 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC2.27□□□□□ -2.05
NKX3-1Q99801 MTND4LP16-201ENST00000440828 295 ntBASIC2.27□□□□□ -2.05
NKX3-1Q99801 AL031659.1-201ENST00000447075 539 ntBASIC2.27□□□□□ -2.05
NKX3-1Q99801 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.27□□□□□ -2.05
NKX3-1Q99801 RPS27P27-201ENST00000498779 255 ntBASIC2.27□□□□□ -2.05
NKX3-1Q99801 AIG1P1-201ENST00000503376 148 ntBASIC2.27□□□□□ -2.05
NKX3-1Q99801 AC103851.1-201ENST00000506833 274 ntBASIC2.27□□□□□ -2.05
NKX3-1Q99801 LIAS-206ENST00000513731 826 ntTSL 5 BASIC2.27□□□□□ -2.05
NKX3-1Q99801 RNA5SP356-201ENST00000515972 94 ntBASIC2.27□□□□□ -2.05
NKX3-1Q99801 RNU6-507P-201ENST00000516045 100 ntBASIC2.27□□□□□ -2.05
NKX3-1Q99801 Y_RNA.682-201ENST00000516457 100 ntBASIC2.27□□□□□ -2.05
NKX3-1Q99801 RNU6-566P-201ENST00000516790 107 ntBASIC2.27□□□□□ -2.05
NKX3-1Q99801 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.27□□□□□ -2.05
NKX3-1Q99801 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC2.27□□□□□ -2.05
NKX3-1Q99801 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC2.27□□□□□ -2.05
NKX3-1Q99801 AC138761.3-201ENST00000579993 334 ntBASIC2.27□□□□□ -2.05
NKX3-1Q99801 AC090897.2-201ENST00000581715 130 ntBASIC2.27□□□□□ -2.05
NKX3-1Q99801 MIR4765-201ENST00000585007 77 ntBASIC2.27□□□□□ -2.05
NKX3-1Q99801 AL355073.2-201ENST00000612106 557 ntBASIC2.27□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms