Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 RPL23AP94-201ENST00000512518 302 ntBASIC2.04□□□□□ -2.08
VPS39Q96JC1 CYCSP27-201ENST00000527643 293 ntBASIC2.04□□□□□ -2.08
VPS39Q96JC1 UBE2Q2P8-201ENST00000560644 102 ntBASIC2.04□□□□□ -2.08
VPS39Q96JC1 MIR1273D-201ENST00000577266 86 ntBASIC2.04□□□□□ -2.08
VPS39Q96JC1 MIR5692A1-201ENST00000580523 69 ntBASIC2.04□□□□□ -2.08
VPS39Q96JC1 AC103987.3-201ENST00000582071 292 ntBASIC2.04□□□□□ -2.08
VPS39Q96JC1 AP001596.2-201ENST00000608410 312 ntBASIC2.04□□□□□ -2.08
VPS39Q96JC1 AL354950.2-201ENST00000617939 290 ntBASIC2.04□□□□□ -2.08
VPS39Q96JC1 AC068792.1-201ENST00000621354 417 ntBASIC2.04□□□□□ -2.08
VPS39Q96JC1 AC064859.1-201ENST00000624741 174 ntBASIC2.04□□□□□ -2.08
VPS39Q96JC1 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC2.04□□□□□ -2.08
VPS39Q96JC1 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.03□□□□□ -2.08
VPS39Q96JC1 AL354685.2-201ENST00000448218 1447 ntBASIC2.03□□□□□ -2.08
VPS39Q96JC1 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
VPS39Q96JC1 Y_RNA.41-201ENST00000362646 102 ntBASIC2.03□□□□□ -2.08
VPS39Q96JC1 Y_RNA.318-201ENST00000365131 97 ntBASIC2.03□□□□□ -2.08
VPS39Q96JC1 SNORD116-20-201ENST00000384529 92 ntBASIC2.03□□□□□ -2.08
VPS39Q96JC1 RNU4-55P-201ENST00000410731 137 ntBASIC2.03□□□□□ -2.08
VPS39Q96JC1 RNU2-32P-201ENST00000411193 191 ntBASIC2.03□□□□□ -2.08
VPS39Q96JC1 AL663109.1-201ENST00000411498 844 ntBASIC2.03□□□□□ -2.08
VPS39Q96JC1 AL139156.1-201ENST00000412785 841 ntBASIC2.03□□□□□ -2.08
VPS39Q96JC1 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC2.03□□□□□ -2.08
VPS39Q96JC1 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.03□□□□□ -2.08
VPS39Q96JC1 HMGB1P31-201ENST00000437242 427 ntBASIC2.03□□□□□ -2.08
VPS39Q96JC1 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC2.03□□□□□ -2.08
VPS39Q96JC1 AC245102.2-201ENST00000448956 180 ntBASIC2.03□□□□□ -2.08
VPS39Q96JC1 AC006026.2-201ENST00000457376 180 ntBASIC2.03□□□□□ -2.08
VPS39Q96JC1 SCARNA18-201ENST00000459004 134 ntBASIC2.03□□□□□ -2.08
VPS39Q96JC1 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC2.03□□□□□ -2.08
VPS39Q96JC1 AC079382.1-201ENST00000493346 557 ntBASIC2.03□□□□□ -2.08
VPS39Q96JC1 AC074344.1-201ENST00000512823 224 ntBASIC2.03□□□□□ -2.08
VPS39Q96JC1 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.03□□□□□ -2.08
VPS39Q96JC1 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC2.03□□□□□ -2.08
VPS39Q96JC1 AGGF1P4-201ENST00000568249 801 ntBASIC2.03□□□□□ -2.08
VPS39Q96JC1 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC2.03□□□□□ -2.08
VPS39Q96JC1 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC2.03□□□□□ -2.08
VPS39Q96JC1 AL670379.2-201ENST00000604983 252 ntBASIC2.03□□□□□ -2.08
VPS39Q96JC1 AC123912.5-201ENST00000605470 343 ntBASIC2.03□□□□□ -2.08
VPS39Q96JC1 AL359314.1-201ENST00000616913 261 ntBASIC2.03□□□□□ -2.08
VPS39Q96JC1 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC2.03□□□□□ -2.08
VPS39Q96JC1 RMST_7.1-201ENST00000621935 268 ntBASIC2.03□□□□□ -2.08
VPS39Q96JC1 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC2.03□□□□□ -2.08
VPS39Q96JC1 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC2.02□□□□□ -2.09
VPS39Q96JC1 RNU6-37P-201ENST00000362692 107 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 RNU6-552P-201ENST00000362869 119 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 SNORD115-3-201ENST00000363100 82 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 Y_RNA.194-201ENST00000363985 102 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 RNU6-11P-201ENST00000364234 107 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 RNU4-40P-201ENST00000364351 143 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 RNU6-25P-201ENST00000383873 107 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 RNU6-1-201ENST00000383898 107 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 RNU6-546P-201ENST00000383991 107 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 RNU6-259P-201ENST00000383999 107 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 RNU6-48P-201ENST00000384161 107 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 RNU6-36P-201ENST00000384172 107 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 RNU6-4P-201ENST00000384205 107 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 RNU6-5P-201ENST00000384238 107 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 RNU6-611P-201ENST00000384276 104 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 RNU6-3P-201ENST00000384314 107 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 RNU6-16P-201ENST00000384385 107 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 RNU6-15P-201ENST00000384534 107 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 RNU6-2-201ENST00000384627 107 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 RNU6-29P-201ENST00000384637 107 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 Y_RNA.559-201ENST00000384686 107 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 RNU6-9-201ENST00000384776 107 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 RNU6-33P-201ENST00000384793 107 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 RNA5SP212-201ENST00000391223 107 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 AC027124.2-201ENST00000428249 105 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 VN1R108P-201ENST00000431580 830 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 AL365400.1-201ENST00000431854 640 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 MTND2P29-201ENST00000438595 412 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 AP001025.1-201ENST00000486139 332 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC2.02□□□□□ -2.09
VPS39Q96JC1 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.02□□□□□ -2.09
VPS39Q96JC1 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC2.02□□□□□ -2.09
VPS39Q96JC1 RNU2-69P-201ENST00000516061 100 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 SNORA43.2-201ENST00000516652 128 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 SNORA31.23-201ENST00000517219 133 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 IGKV3-31-201ENST00000523109 329 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC2.02□□□□□ -2.09
VPS39Q96JC1 AP005639.2-201ENST00000527592 928 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.02□□□□□ -2.09
VPS39Q96JC1 MIR4448-201ENST00000584360 86 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 AL078605.1-201ENST00000603529 500 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 RNU6-6P-201ENST00000606623 107 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.02□□□□□ -2.09
VPS39Q96JC1 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC2.02□□□□□ -2.09
VPS39Q96JC1 AC097372.5-201ENST00000623665 376 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 SCARNA4-202ENST00000625402 129 ntBASIC2.02□□□□□ -2.09
VPS39Q96JC1 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
VPS39Q96JC1 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
VPS39Q96JC1 RNU6-1210P-201ENST00000363775 107 ntBASIC2.01□□□□□ -2.09
VPS39Q96JC1 Y_RNA.324-201ENST00000365165 102 ntBASIC2.01□□□□□ -2.09
VPS39Q96JC1 RNU5A-6P-201ENST00000384136 116 ntBASIC2.01□□□□□ -2.09
VPS39Q96JC1 RNU6-393P-201ENST00000384475 107 ntBASIC2.01□□□□□ -2.09
VPS39Q96JC1 RNU6-1274P-201ENST00000384557 107 ntBASIC2.01□□□□□ -2.09
VPS39Q96JC1 SNORA8-201ENST00000384574 139 ntBASIC2.01□□□□□ -2.09
VPS39Q96JC1 RNU6-780P-201ENST00000391030 104 ntBASIC2.01□□□□□ -2.09
VPS39Q96JC1 CALM2P3-201ENST00000400429 449 ntBASIC2.01□□□□□ -2.09
VPS39Q96JC1 AL023284.1-201ENST00000403956 276 ntBASIC2.01□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 120.7 ms