Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 MIR517A-201ENST00000385001 87 ntBASIC3.38□□□□□ -1.87
VPS53Q5VIR6 MORN2-203ENST00000409131 544 ntTSL 5 BASIC3.38□□□□□ -1.87
VPS53Q5VIR6 AL030996.1-201ENST00000411430 235 ntBASIC3.38□□□□□ -1.87
VPS53Q5VIR6 RPL26P27-201ENST00000414397 437 ntBASIC3.38□□□□□ -1.87
VPS53Q5VIR6 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.38□□□□□ -1.87
VPS53Q5VIR6 MTND2P23-201ENST00000422990 651 ntBASIC3.38□□□□□ -1.87
VPS53Q5VIR6 PMCHL1-202ENST00000423102 261 ntBASIC3.38□□□□□ -1.87
VPS53Q5VIR6 USMG5P1-201ENST00000425964 177 ntBASIC3.38□□□□□ -1.87
VPS53Q5VIR6 TOMM20P4-201ENST00000427861 435 ntBASIC3.38□□□□□ -1.87
VPS53Q5VIR6 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
VPS53Q5VIR6 USP9YP30-201ENST00000430729 455 ntBASIC3.38□□□□□ -1.87
VPS53Q5VIR6 AC107083.1-201ENST00000439643 279 ntBASIC3.38□□□□□ -1.87
VPS53Q5VIR6 RPL23AP58-201ENST00000440453 469 ntBASIC3.38□□□□□ -1.87
VPS53Q5VIR6 DAP3P1-201ENST00000441522 278 ntBASIC3.38□□□□□ -1.87
VPS53Q5VIR6 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS53Q5VIR6 HMGN1P10-201ENST00000474557 553 ntBASIC3.38□□□□□ -1.87
VPS53Q5VIR6 RNU6-327P-201ENST00000516270 127 ntBASIC3.38□□□□□ -1.87
VPS53Q5VIR6 RNU6-572P-201ENST00000516724 80 ntBASIC3.38□□□□□ -1.87
VPS53Q5VIR6 RNU6-307P-201ENST00000516743 106 ntBASIC3.38□□□□□ -1.87
VPS53Q5VIR6 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC3.38□□□□□ -1.87
VPS53Q5VIR6 AC008739.2-201ENST00000597006 317 ntBASIC3.38□□□□□ -1.87
VPS53Q5VIR6 AL137843.1-201ENST00000605078 385 ntBASIC3.38□□□□□ -1.87
VPS53Q5VIR6 MTND4LP5-201ENST00000605152 292 ntBASIC3.38□□□□□ -1.87
VPS53Q5VIR6 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
VPS53Q5VIR6 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
VPS53Q5VIR6 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
VPS53Q5VIR6 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
VPS53Q5VIR6 ZBTB8OSP1-201ENST00000342688 498 ntBASIC3.37□□□□□ -1.87
VPS53Q5VIR6 Y_RNA.28-201ENST00000362554 111 ntBASIC3.37□□□□□ -1.87
VPS53Q5VIR6 SNORA80A-201ENST00000363922 136 ntBASIC3.37□□□□□ -1.87
VPS53Q5VIR6 RNU6-596P-201ENST00000365395 98 ntBASIC3.37□□□□□ -1.87
VPS53Q5VIR6 RNU6-1160P-201ENST00000384546 104 ntBASIC3.37□□□□□ -1.87
VPS53Q5VIR6 MIR10A-201ENST00000385043 110 ntBASIC3.37□□□□□ -1.87
VPS53Q5VIR6 MIR34A-201ENST00000385130 110 ntBASIC3.37□□□□□ -1.87
VPS53Q5VIR6 RNU6-1106P-201ENST00000390845 107 ntBASIC3.37□□□□□ -1.87
VPS53Q5VIR6 NDUFB4P4-201ENST00000404822 243 ntBASIC3.37□□□□□ -1.87
VPS53Q5VIR6 SNORD56-201ENST00000413522 71 ntBASIC3.37□□□□□ -1.87
VPS53Q5VIR6 COTL1P1-201ENST00000422309 375 ntBASIC3.37□□□□□ -1.87
VPS53Q5VIR6 AC007560.1-201ENST00000426912 237 ntBASIC3.37□□□□□ -1.87
VPS53Q5VIR6 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC3.37□□□□□ -1.87
VPS53Q5VIR6 PCMTD1P1-201ENST00000455560 355 ntBASIC3.37□□□□□ -1.87
VPS53Q5VIR6 AC003982.1-202ENST00000469928 248 ntBASIC3.37□□□□□ -1.87
VPS53Q5VIR6 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC3.37□□□□□ -1.87
VPS53Q5VIR6 RPL7P42-201ENST00000481005 679 ntBASIC3.37□□□□□ -1.87
VPS53Q5VIR6 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC3.37□□□□□ -1.87
VPS53Q5VIR6 RNA5SP76-201ENST00000516277 87 ntBASIC3.37□□□□□ -1.87
VPS53Q5VIR6 RNU6-703P-201ENST00000516946 107 ntBASIC3.37□□□□□ -1.87
VPS53Q5VIR6 AC025281.1-201ENST00000567026 265 ntBASIC3.37□□□□□ -1.87
VPS53Q5VIR6 AC005899.2-201ENST00000584353 90 ntBASIC3.37□□□□□ -1.87
VPS53Q5VIR6 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.37□□□□□ -1.87
VPS53Q5VIR6 AL162730.1-201ENST00000605734 292 ntBASIC3.37□□□□□ -1.87
VPS53Q5VIR6 AC004832.5-201ENST00000608677 401 ntBASIC3.37□□□□□ -1.87
VPS53Q5VIR6 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC3.37□□□□□ -1.87
VPS53Q5VIR6 AC107871.2-201ENST00000612894 502 ntBASIC3.37□□□□□ -1.87
VPS53Q5VIR6 AC040896.1-201ENST00000613819 479 ntBASIC3.37□□□□□ -1.87
VPS53Q5VIR6 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
VPS53Q5VIR6 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.37□□□□□ -1.87
VPS53Q5VIR6 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.36□□□□□ -1.87
VPS53Q5VIR6 AC108206.1-201ENST00000570186 4159 ntBASIC3.36□□□□□ -1.87
VPS53Q5VIR6 Y_RNA.31-201ENST00000362574 102 ntBASIC3.36□□□□□ -1.87
VPS53Q5VIR6 Y_RNA.151-201ENST00000363566 112 ntBASIC3.36□□□□□ -1.87
VPS53Q5VIR6 RNU1-112P-201ENST00000364401 164 ntBASIC3.36□□□□□ -1.87
VPS53Q5VIR6 SNORA63C-201ENST00000364578 129 ntBASIC3.36□□□□□ -1.87
VPS53Q5VIR6 SNORA22B-201ENST00000383876 138 ntBASIC3.36□□□□□ -1.87
VPS53Q5VIR6 RNU1-73P-201ENST00000383971 164 ntBASIC3.36□□□□□ -1.87
VPS53Q5VIR6 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
VPS53Q5VIR6 SNORD88.1-201ENST00000408684 91 ntBASIC3.36□□□□□ -1.87
VPS53Q5VIR6 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC3.36□□□□□ -1.87
VPS53Q5VIR6 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.36□□□□□ -1.87
VPS53Q5VIR6 AL133396.1-201ENST00000432048 687 ntBASIC3.36□□□□□ -1.87
VPS53Q5VIR6 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.36□□□□□ -1.87
VPS53Q5VIR6 AC109479.2-201ENST00000517842 174 ntBASIC3.36□□□□□ -1.87
VPS53Q5VIR6 RNU6-988P-201ENST00000519081 107 ntBASIC3.36□□□□□ -1.87
VPS53Q5VIR6 AL355877.2-201ENST00000603670 358 ntBASIC3.36□□□□□ -1.87
VPS53Q5VIR6 AC016925.2-201ENST00000605108 242 ntBASIC3.36□□□□□ -1.87
VPS53Q5VIR6 AC011890.2-201ENST00000613393 294 ntBASIC3.36□□□□□ -1.87
VPS53Q5VIR6 UCA1.1-201ENST00000620952 75 ntBASIC3.36□□□□□ -1.87
VPS53Q5VIR6 AC092608.2-201ENST00000624427 218 ntBASIC3.36□□□□□ -1.87
VPS53Q5VIR6 U2.21-201ENST00000637295 81 ntBASIC3.36□□□□□ -1.87
VPS53Q5VIR6 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.36□□□□□ -1.87
VPS53Q5VIR6 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.35□□□□□ -1.87
VPS53Q5VIR6 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
VPS53Q5VIR6 Y_RNA.5-201ENST00000362334 102 ntBASIC3.35□□□□□ -1.87
VPS53Q5VIR6 RNU6-37P-201ENST00000362692 107 ntBASIC3.35□□□□□ -1.87
VPS53Q5VIR6 RNU6-11P-201ENST00000364234 107 ntBASIC3.35□□□□□ -1.87
VPS53Q5VIR6 RNU6-7-201ENST00000364784 107 ntBASIC3.35□□□□□ -1.87
VPS53Q5VIR6 RNU6-8-201ENST00000365467 107 ntBASIC3.35□□□□□ -1.87
VPS53Q5VIR6 RNU6-25P-201ENST00000383873 107 ntBASIC3.35□□□□□ -1.87
VPS53Q5VIR6 RNU6-1-201ENST00000383898 107 ntBASIC3.35□□□□□ -1.87
VPS53Q5VIR6 RNU6-48P-201ENST00000384161 107 ntBASIC3.35□□□□□ -1.87
VPS53Q5VIR6 RNU6-36P-201ENST00000384172 107 ntBASIC3.35□□□□□ -1.87
VPS53Q5VIR6 RNU6-4P-201ENST00000384205 107 ntBASIC3.35□□□□□ -1.87
VPS53Q5VIR6 RNU6-5P-201ENST00000384238 107 ntBASIC3.35□□□□□ -1.87
VPS53Q5VIR6 RNU6-3P-201ENST00000384314 107 ntBASIC3.35□□□□□ -1.87
VPS53Q5VIR6 Y_RNA.473-201ENST00000384333 102 ntBASIC3.35□□□□□ -1.87
VPS53Q5VIR6 RNU6-16P-201ENST00000384385 107 ntBASIC3.35□□□□□ -1.87
VPS53Q5VIR6 RNU6-15P-201ENST00000384534 107 ntBASIC3.35□□□□□ -1.87
VPS53Q5VIR6 RNU6-2-201ENST00000384627 107 ntBASIC3.35□□□□□ -1.87
VPS53Q5VIR6 RNU6-29P-201ENST00000384637 107 ntBASIC3.35□□□□□ -1.87
VPS53Q5VIR6 RNU6-9-201ENST00000384776 107 ntBASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms