Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 RNU1-148P-201ENST00000384472 162 ntBASIC1.85□□□□□ -2.11
MSH6P52701 CISD1P1-201ENST00000393907 327 ntBASIC1.85□□□□□ -2.11
MSH6P52701 MIR1302-8-201ENST00000408342 128 ntBASIC1.85□□□□□ -2.11
MSH6P52701 RPS3AP3-201ENST00000411933 242 ntBASIC1.85□□□□□ -2.11
MSH6P52701 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC1.85□□□□□ -2.11
MSH6P52701 CYCSP46-201ENST00000423569 204 ntBASIC1.85□□□□□ -2.11
MSH6P52701 AC104850.1-201ENST00000435940 476 ntBASIC1.85□□□□□ -2.11
MSH6P52701 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC1.85□□□□□ -2.11
MSH6P52701 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC1.85□□□□□ -2.11
MSH6P52701 RBBP4P6-201ENST00000508098 202 ntBASIC1.85□□□□□ -2.11
MSH6P52701 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC1.85□□□□□ -2.11
MSH6P52701 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.85□□□□□ -2.11
MSH6P52701 RNU6-1220P-201ENST00000517126 108 ntBASIC1.85□□□□□ -2.11
MSH6P52701 AC109446.2-201ENST00000567872 497 ntBASIC1.85□□□□□ -2.11
MSH6P52701 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC1.85□□□□□ -2.11
MSH6P52701 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
MSH6P52701 AL096840.1-201ENST00000603287 93 ntBASIC1.85□□□□□ -2.11
MSH6P52701 AC068276.1-201ENST00000605793 379 ntBASIC1.85□□□□□ -2.11
MSH6P52701 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC1.85□□□□□ -2.11
MSH6P52701 U4atac.1-201ENST00000618345 95 ntBASIC1.85□□□□□ -2.11
MSH6P52701 AP003400.5-201ENST00000624827 617 ntBASIC1.85□□□□□ -2.11
MSH6P52701 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
MSH6P52701 MTND5P10-201ENST00000603719 1809 ntBASIC1.84□□□□□ -2.11
MSH6P52701 RNU6-843P-201ENST00000384454 104 ntBASIC1.84□□□□□ -2.12
MSH6P52701 MIR222-201ENST00000384992 110 ntBASIC1.84□□□□□ -2.12
MSH6P52701 MIR95-201ENST00000385072 81 ntBASIC1.84□□□□□ -2.12
MSH6P52701 AC127391.1-201ENST00000411737 98 ntBASIC1.84□□□□□ -2.12
MSH6P52701 RPS20P15-201ENST00000412792 311 ntBASIC1.84□□□□□ -2.12
MSH6P52701 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.84□□□□□ -2.12
MSH6P52701 MTCYBP5-201ENST00000423752 1135 ntBASIC1.84□□□□□ -2.12
MSH6P52701 EIF4EP4-201ENST00000424916 578 ntBASIC1.84□□□□□ -2.12
MSH6P52701 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC1.84□□□□□ -2.12
MSH6P52701 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC1.84□□□□□ -2.12
MSH6P52701 MTATP6P16-201ENST00000434543 526 ntBASIC1.84□□□□□ -2.12
MSH6P52701 AL445567.1-201ENST00000439121 144 ntBASIC1.84□□□□□ -2.12
MSH6P52701 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.84□□□□□ -2.12
MSH6P52701 ART2BP-201ENST00000453501 499 ntBASIC1.84□□□□□ -2.12
MSH6P52701 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC1.84□□□□□ -2.12
MSH6P52701 snoU109.2-201ENST00000459316 135 ntBASIC1.84□□□□□ -2.12
MSH6P52701 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC1.84□□□□□ -2.12
MSH6P52701 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC1.84□□□□□ -2.12
MSH6P52701 AP004607.1-201ENST00000524456 203 ntBASIC1.84□□□□□ -2.12
MSH6P52701 LRRC34P1-201ENST00000542742 915 ntBASIC1.84□□□□□ -2.12
MSH6P52701 AC005730.3-201ENST00000583067 366 ntBASIC1.84□□□□□ -2.12
MSH6P52701 DEFB131E-202ENST00000602581 683 ntBASIC1.84□□□□□ -2.12
MSH6P52701 AC025165.5-201ENST00000602802 578 ntBASIC1.84□□□□□ -2.12
MSH6P52701 Z99289.3-201ENST00000605586 594 ntBASIC1.84□□□□□ -2.12
MSH6P52701 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.84□□□□□ -2.12
MSH6P52701 AC096772.1-201ENST00000609146 564 ntBASIC1.84□□□□□ -2.12
MSH6P52701 AC007494.3-201ENST00000624660 743 ntBASIC1.84□□□□□ -2.12
MSH6P52701 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
MSH6P52701 RNU4-21P-201ENST00000362802 126 ntBASIC1.83□□□□□ -2.12
MSH6P52701 SNORD14B-201ENST00000364533 90 ntBASIC1.83□□□□□ -2.12
MSH6P52701 RNA5SP240-201ENST00000365355 128 ntBASIC1.83□□□□□ -2.12
MSH6P52701 RNU6-641P-201ENST00000384006 107 ntBASIC1.83□□□□□ -2.12
MSH6P52701 RNU6-1032P-201ENST00000384100 107 ntBASIC1.83□□□□□ -2.12
MSH6P52701 RNU6-72P-201ENST00000384285 79 ntBASIC1.83□□□□□ -2.12
MSH6P52701 MIR578-201ENST00000384828 96 ntBASIC1.83□□□□□ -2.12
MSH6P52701 RNU2-63P-201ENST00000410792 194 ntBASIC1.83□□□□□ -2.12
MSH6P52701 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC1.83□□□□□ -2.12
MSH6P52701 SCARNA24.1-201ENST00000516465 137 ntBASIC1.83□□□□□ -2.12
MSH6P52701 Vault.3-201ENST00000516676 95 ntBASIC1.83□□□□□ -2.12
MSH6P52701 AC090572.1-201ENST00000519251 160 ntBASIC1.83□□□□□ -2.12
MSH6P52701 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC1.83□□□□□ -2.12
MSH6P52701 AC118273.2-201ENST00000532092 465 ntBASIC1.83□□□□□ -2.12
MSH6P52701 POC1B-211ENST00000549504 581 ntTSL 5 BASIC1.83□□□□□ -2.12
MSH6P52701 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC1.83□□□□□ -2.12
MSH6P52701 AC136619.2-201ENST00000563361 631 ntBASIC1.83□□□□□ -2.12
MSH6P52701 MIR548AC-201ENST00000585049 88 ntBASIC1.83□□□□□ -2.12
MSH6P52701 AC087683.2-201ENST00000611384 326 ntBASIC1.83□□□□□ -2.12
MSH6P52701 AL133173.2-201ENST00000614270 90 ntBASIC1.83□□□□□ -2.12
MSH6P52701 AL603755.1-201ENST00000619504 163 ntBASIC1.83□□□□□ -2.12
MSH6P52701 AL157786.1-207ENST00000627771 695 ntBASIC1.83□□□□□ -2.12
MSH6P52701 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC1.83□□□□□ -2.12
MSH6P52701 ATM-228ENST00000639240 498 ntTSL 5 BASIC1.83□□□□□ -2.12
MSH6P52701 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
MSH6P52701 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
MSH6P52701 SNORD114-19-201ENST00000363072 75 ntBASIC1.82□□□□□ -2.12
MSH6P52701 RNU6-384P-201ENST00000364900 104 ntBASIC1.82□□□□□ -2.12
MSH6P52701 Y_RNA.393-201ENST00000383936 102 ntBASIC1.82□□□□□ -2.12
MSH6P52701 RN7SKP158-201ENST00000410453 326 ntBASIC1.82□□□□□ -2.12
MSH6P52701 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
MSH6P52701 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC1.82□□□□□ -2.12
MSH6P52701 AC009961.2-201ENST00000435771 251 ntBASIC1.82□□□□□ -2.12
MSH6P52701 AC073614.1-201ENST00000438690 650 ntBASIC1.82□□□□□ -2.12
MSH6P52701 AL161788.1-201ENST00000441805 169 ntBASIC1.82□□□□□ -2.12
MSH6P52701 GAPDHP17-201ENST00000449858 1001 ntBASIC1.82□□□□□ -2.12
MSH6P52701 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC1.82□□□□□ -2.12
MSH6P52701 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC1.82□□□□□ -2.12
MSH6P52701 CYP2C59P-201ENST00000457790 269 ntBASIC1.82□□□□□ -2.12
MSH6P52701 MED28P2-201ENST00000475771 317 ntBASIC1.82□□□□□ -2.12
MSH6P52701 RNA5SP61-201ENST00000516453 100 ntBASIC1.82□□□□□ -2.12
MSH6P52701 Y_RNA.717-201ENST00000517106 92 ntBASIC1.82□□□□□ -2.12
MSH6P52701 AC109329.1-201ENST00000518744 317 ntBASIC1.82□□□□□ -2.12
MSH6P52701 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.82□□□□□ -2.12
MSH6P52701 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC1.82□□□□□ -2.12
MSH6P52701 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC1.82□□□□□ -2.12
MSH6P52701 AC087883.1-201ENST00000551882 391 ntBASIC1.82□□□□□ -2.12
MSH6P52701 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC1.82□□□□□ -2.12
MSH6P52701 MIR3682-201ENST00000581338 84 ntBASIC1.82□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 113.6 ms