Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.79□□□□□ -1.96
SHMT1P34896 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
SHMT1P34896 RNU6-858P-201ENST00000362436 107 ntBASIC2.79□□□□□ -1.96
SHMT1P34896 RNU6-78P-201ENST00000362897 107 ntBASIC2.79□□□□□ -1.96
SHMT1P34896 VTRNA1-1-201ENST00000363120 99 ntBASIC2.79□□□□□ -1.96
SHMT1P34896 U8.2-201ENST00000363156 134 ntBASIC2.79□□□□□ -1.96
SHMT1P34896 SNORD56.5-201ENST00000364281 72 ntBASIC2.79□□□□□ -1.96
SHMT1P34896 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
SHMT1P34896 RNU1-109P-201ENST00000383960 147 ntBASIC2.79□□□□□ -1.96
SHMT1P34896 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
SHMT1P34896 RN7SKP32-201ENST00000410167 303 ntBASIC2.79□□□□□ -1.96
SHMT1P34896 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.79□□□□□ -1.96
SHMT1P34896 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.79□□□□□ -1.96
SHMT1P34896 AL121890.1-201ENST00000435457 205 ntBASIC2.79□□□□□ -1.96
SHMT1P34896 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC2.79□□□□□ -1.96
SHMT1P34896 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.79□□□□□ -1.96
SHMT1P34896 RNU6-377P-201ENST00000515965 102 ntBASIC2.79□□□□□ -1.96
SHMT1P34896 RNU6-1332P-201ENST00000516666 104 ntBASIC2.79□□□□□ -1.96
SHMT1P34896 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2.79□□□□□ -1.96
SHMT1P34896 AP000889.2-201ENST00000532684 490 ntBASIC2.79□□□□□ -1.96
SHMT1P34896 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC2.79□□□□□ -1.96
SHMT1P34896 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC2.79□□□□□ -1.96
SHMT1P34896 AC009163.5-201ENST00000575421 637 ntBASIC2.79□□□□□ -1.96
SHMT1P34896 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.79□□□□□ -1.96
SHMT1P34896 MIR3672-201ENST00000584290 82 ntBASIC2.79□□□□□ -1.96
SHMT1P34896 AC023043.3-201ENST00000593113 385 ntBASIC2.79□□□□□ -1.96
SHMT1P34896 AL391813.1-201ENST00000603098 260 ntBASIC2.79□□□□□ -1.96
SHMT1P34896 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.79□□□□□ -1.96
SHMT1P34896 AC067747.1-201ENST00000608026 250 ntBASIC2.79□□□□□ -1.96
SHMT1P34896 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.79□□□□□ -1.96
SHMT1P34896 UCA1.1-201ENST00000620952 75 ntBASIC2.79□□□□□ -1.96
SHMT1P34896 AL008636.1-201ENST00000625038 1018 ntBASIC2.79□□□□□ -1.96
SHMT1P34896 U4.7-201ENST00000638126 106 ntBASIC2.79□□□□□ -1.96
SHMT1P34896 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
SHMT1P34896 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
SHMT1P34896 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
SHMT1P34896 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.78□□□□□ -1.96
SHMT1P34896 Y_RNA.166-201ENST00000363730 102 ntBASIC2.78□□□□□ -1.96
SHMT1P34896 RNU6-748P-201ENST00000384648 107 ntBASIC2.78□□□□□ -1.96
SHMT1P34896 SNORA41-201ENST00000384675 132 ntBASIC2.78□□□□□ -1.96
SHMT1P34896 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
SHMT1P34896 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC2.78□□□□□ -1.96
SHMT1P34896 OSTCP8-201ENST00000445117 448 ntBASIC2.78□□□□□ -1.96
SHMT1P34896 MTND5P20-201ENST00000448677 143 ntBASIC2.78□□□□□ -1.96
SHMT1P34896 AC012308.1-201ENST00000451232 178 ntBASIC2.78□□□□□ -1.96
SHMT1P34896 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC2.78□□□□□ -1.96
SHMT1P34896 RPL7P43-201ENST00000478876 753 ntBASIC2.78□□□□□ -1.96
SHMT1P34896 RPS29P21-201ENST00000496272 170 ntBASIC2.78□□□□□ -1.96
SHMT1P34896 HMGN1P12-201ENST00000499125 195 ntBASIC2.78□□□□□ -1.96
SHMT1P34896 AC008628.2-201ENST00000502605 298 ntBASIC2.78□□□□□ -1.96
SHMT1P34896 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC2.78□□□□□ -1.96
SHMT1P34896 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.78□□□□□ -1.96
SHMT1P34896 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC2.78□□□□□ -1.96
SHMT1P34896 AP005597.4-201ENST00000526762 229 ntBASIC2.78□□□□□ -1.96
SHMT1P34896 AC026371.1-201ENST00000551867 419 ntBASIC2.78□□□□□ -1.96
SHMT1P34896 MIR4742-201ENST00000581069 85 ntBASIC2.78□□□□□ -1.96
SHMT1P34896 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.78□□□□□ -1.96
SHMT1P34896 UBE2V2P2-201ENST00000587677 504 ntBASIC2.78□□□□□ -1.96
SHMT1P34896 AC021646.1-201ENST00000605469 484 ntBASIC2.78□□□□□ -1.96
SHMT1P34896 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.78□□□□□ -1.96
SHMT1P34896 AC092794.2-201ENST00000620933 563 ntBASIC2.78□□□□□ -1.96
SHMT1P34896 MIR3529-201ENST00000637713 78 ntBASIC2.78□□□□□ -1.96
SHMT1P34896 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
SHMT1P34896 Y_RNA.212-201ENST00000364177 102 ntBASIC2.77□□□□□ -1.97
SHMT1P34896 RNU6-1329P-201ENST00000365664 107 ntBASIC2.77□□□□□ -1.97
SHMT1P34896 RNA5SP425-201ENST00000410336 112 ntBASIC2.77□□□□□ -1.97
SHMT1P34896 AC007064.1-201ENST00000412238 351 ntBASIC2.77□□□□□ -1.97
SHMT1P34896 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC2.77□□□□□ -1.97
SHMT1P34896 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC2.77□□□□□ -1.97
SHMT1P34896 UBE2V1P4-201ENST00000425374 344 ntBASIC2.77□□□□□ -1.97
SHMT1P34896 AC018634.1-201ENST00000437554 401 ntBASIC2.77□□□□□ -1.97
SHMT1P34896 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC2.77□□□□□ -1.97
SHMT1P34896 AL031274.1-201ENST00000450334 232 ntBASIC2.77□□□□□ -1.97
SHMT1P34896 AL513124.1-201ENST00000450410 614 ntBASIC2.77□□□□□ -1.97
SHMT1P34896 PPP1R2P5-201ENST00000457256 603 ntBASIC2.77□□□□□ -1.97
SHMT1P34896 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC2.77□□□□□ -1.97
SHMT1P34896 AC107626.1-201ENST00000471084 183 ntBASIC2.77□□□□□ -1.97
SHMT1P34896 MED28P2-201ENST00000475771 317 ntBASIC2.77□□□□□ -1.97
SHMT1P34896 GZMAP1-201ENST00000503054 631 ntBASIC2.77□□□□□ -1.97
SHMT1P34896 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.77□□□□□ -1.97
SHMT1P34896 MTCYBP40-201ENST00000509390 1135 ntBASIC2.77□□□□□ -1.97
SHMT1P34896 RNU5F-8P-201ENST00000515941 111 ntBASIC2.77□□□□□ -1.97
SHMT1P34896 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC2.77□□□□□ -1.97
SHMT1P34896 AC010186.2-204ENST00000537668 439 ntBASIC2.77□□□□□ -1.97
SHMT1P34896 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.77□□□□□ -1.97
SHMT1P34896 MIR3124-201ENST00000582636 67 ntBASIC2.77□□□□□ -1.97
SHMT1P34896 MIR3942-201ENST00000585264 109 ntBASIC2.77□□□□□ -1.97
SHMT1P34896 AC023043.2-201ENST00000589678 1026 ntBASIC2.77□□□□□ -1.97
SHMT1P34896 AL670379.10-201ENST00000604330 253 ntBASIC2.77□□□□□ -1.97
SHMT1P34896 AL670379.9-201ENST00000605428 253 ntBASIC2.77□□□□□ -1.97
SHMT1P34896 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.77□□□□□ -1.97
SHMT1P34896 AL138726.1-201ENST00000614873 333 ntBASIC2.77□□□□□ -1.97
SHMT1P34896 ZNF519P1-201ENST00000449011 1626 ntBASIC2.77□□□□□ -1.97
SHMT1P34896 HAUS6P2-201ENST00000433254 2404 ntBASIC2.76□□□□□ -1.97
SHMT1P34896 RNU6-527P-201ENST00000363425 104 ntBASIC2.76□□□□□ -1.97
SHMT1P34896 Y_RNA.301-201ENST00000364990 103 ntBASIC2.76□□□□□ -1.97
SHMT1P34896 SNORD116-20-201ENST00000384529 92 ntBASIC2.76□□□□□ -1.97
SHMT1P34896 MIR147B-201ENST00000390185 80 ntBASIC2.76□□□□□ -1.97
SHMT1P34896 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.76□□□□□ -1.97
SHMT1P34896 RN7SKP192-201ENST00000411291 327 ntBASIC2.76□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 113.3 ms