Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AL008629.1-201ENST00000438615 184 ntBASIC-0.26□□□□□ -2.45
HMGA1P17096 snoU13.30-201ENST00000458951 104 ntBASIC-0.26□□□□□ -2.45
HMGA1P17096 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC-0.26□□□□□ -2.45
HMGA1P17096 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC-0.26□□□□□ -2.45
HMGA1P17096 AP003049.1-201ENST00000529418 457 ntBASIC-0.26□□□□□ -2.45
HMGA1P17096 AC090888.2-201ENST00000559765 1144 ntBASIC-0.26□□□□□ -2.45
HMGA1P17096 AC011195.1-201ENST00000578177 177 ntBASIC-0.26□□□□□ -2.45
HMGA1P17096 AC025627.3-201ENST00000582078 182 ntBASIC-0.26□□□□□ -2.45
HMGA1P17096 AC146944.4-201ENST00000602697 718 ntBASIC-0.26□□□□□ -2.45
HMGA1P17096 AL357094.1-201ENST00000603845 844 ntBASIC-0.26□□□□□ -2.45
HMGA1P17096 AL355598.1-201ENST00000604169 202 ntBASIC-0.26□□□□□ -2.45
HMGA1P17096 BNIP3P31-201ENST00000604515 566 ntBASIC-0.26□□□□□ -2.45
HMGA1P17096 RNU6ATAC35P-201ENST00000609276 444 ntBASIC-0.26□□□□□ -2.45
HMGA1P17096 AC013476.2-201ENST00000614456 459 ntBASIC-0.26□□□□□ -2.45
HMGA1P17096 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC-0.26□□□□□ -2.45
HMGA1P17096 AL031667.3-201ENST00000620124 655 ntBASIC-0.26□□□□□ -2.45
HMGA1P17096 7SK.10-201ENST00000621414 298 ntBASIC-0.26□□□□□ -2.45
HMGA1P17096 AC138627.2-201ENST00000624202 601 ntBASIC-0.26□□□□□ -2.45
HMGA1P17096 MIR4275-201ENST00000636486 87 ntBASIC-0.26□□□□□ -2.45
HMGA1P17096 MIR4315-1-201ENST00000636800 73 ntBASIC-0.26□□□□□ -2.45
HMGA1P17096 MIR4315-2-201ENST00000640925 73 ntBASIC-0.26□□□□□ -2.45
HMGA1P17096 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC-0.27□□□□□ -2.45
HMGA1P17096 RNU6-944P-201ENST00000364023 107 ntBASIC-0.27□□□□□ -2.45
HMGA1P17096 RNU6-163P-201ENST00000384396 106 ntBASIC-0.27□□□□□ -2.45
HMGA1P17096 SNORA80D-201ENST00000384488 135 ntBASIC-0.27□□□□□ -2.45
HMGA1P17096 RNA5SP496-201ENST00000391240 109 ntBASIC-0.27□□□□□ -2.45
HMGA1P17096 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC-0.27□□□□□ -2.45
HMGA1P17096 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC-0.27□□□□□ -2.45
HMGA1P17096 AC097473.1-201ENST00000508142 408 ntBASIC-0.27□□□□□ -2.45
HMGA1P17096 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC-0.27□□□□□ -2.45
HMGA1P17096 AL132657.2-201ENST00000564417 358 ntBASIC-0.27□□□□□ -2.45
HMGA1P17096 MIR4290-201ENST00000583807 95 ntBASIC-0.27□□□□□ -2.45
HMGA1P17096 RNU6-91P-201ENST00000607774 107 ntBASIC-0.27□□□□□ -2.45
HMGA1P17096 AC123767.1-202ENST00000620407 817 ntBASIC-0.27□□□□□ -2.45
HMGA1P17096 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC-0.28□□□□□ -2.45
HMGA1P17096 MIR194-1-201ENST00000384892 85 ntBASIC-0.28□□□□□ -2.45
HMGA1P17096 MIR518A1-201ENST00000385068 85 ntBASIC-0.28□□□□□ -2.45
HMGA1P17096 MIR214-201ENST00000385214 110 ntBASIC-0.28□□□□□ -2.45
HMGA1P17096 RNA5SP219-201ENST00000390940 113 ntBASIC-0.28□□□□□ -2.45
HMGA1P17096 DHFRP6-201ENST00000401776 268 ntBASIC-0.28□□□□□ -2.45
HMGA1P17096 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC-0.28□□□□□ -2.45
HMGA1P17096 SNRPGP12-201ENST00000449481 213 ntBASIC-0.28□□□□□ -2.45
HMGA1P17096 RPS27AP8-201ENST00000452665 445 ntBASIC-0.28□□□□□ -2.45
HMGA1P17096 CECR9-201ENST00000453421 199 ntBASIC-0.28□□□□□ -2.45
HMGA1P17096 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC-0.28□□□□□ -2.45
HMGA1P17096 RPF2P2-201ENST00000504693 896 ntBASIC-0.28□□□□□ -2.45
HMGA1P17096 RN7SKP258-201ENST00000517151 304 ntBASIC-0.28□□□□□ -2.45
HMGA1P17096 SUMO2P16-201ENST00000519475 264 ntBASIC-0.28□□□□□ -2.45
HMGA1P17096 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC-0.28□□□□□ -2.45
HMGA1P17096 AP005212.4-201ENST00000614206 710 ntBASIC-0.28□□□□□ -2.45
HMGA1P17096 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC-0.28□□□□□ -2.45
HMGA1P17096 Y_RNA.433-201ENST00000384089 102 ntBASIC-0.29□□□□□ -2.46
HMGA1P17096 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC-0.29□□□□□ -2.46
HMGA1P17096 AC068135.1-201ENST00000446164 246 ntBASIC-0.29□□□□□ -2.46
HMGA1P17096 AL160314.1-201ENST00000490836 438 ntBASIC-0.29□□□□□ -2.46
HMGA1P17096 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC-0.29□□□□□ -2.46
HMGA1P17096 MTCYBP40-201ENST00000509390 1135 ntBASIC-0.29□□□□□ -2.46
HMGA1P17096 RNU6-840P-201ENST00000517275 65 ntBASIC-0.29□□□□□ -2.46
HMGA1P17096 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC-0.29□□□□□ -2.46
HMGA1P17096 HIGD1AP6-201ENST00000521833 279 ntBASIC-0.29□□□□□ -2.46
HMGA1P17096 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC-0.29□□□□□ -2.46
HMGA1P17096 AL031281.1-201ENST00000604049 488 ntBASIC-0.29□□□□□ -2.46
HMGA1P17096 AC097065.2-201ENST00000608159 533 ntBASIC-0.29□□□□□ -2.46
HMGA1P17096 AC079416.3-201ENST00000624479 549 ntBASIC-0.29□□□□□ -2.46
HMGA1P17096 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC-0.29□□□□□ -2.46
HMGA1P17096 RNU1-39P-201ENST00000383897 165 ntBASIC-0.3□□□□□ -2.46
HMGA1P17096 SNORA16.2-201ENST00000390991 127 ntBASIC-0.3□□□□□ -2.46
HMGA1P17096 AC138623.1-201ENST00000418060 216 ntBASIC-0.3□□□□□ -2.46
HMGA1P17096 AC011233.1-201ENST00000422812 283 ntBASIC-0.3□□□□□ -2.46
HMGA1P17096 MTCYBP11-201ENST00000447254 1109 ntBASIC-0.3□□□□□ -2.46
HMGA1P17096 AC092685.1-201ENST00000447960 1243 ntBASIC-0.3□□□□□ -2.46
HMGA1P17096 NDUFB4P10-201ENST00000452541 359 ntBASIC-0.3□□□□□ -2.46
HMGA1P17096 AC010460.2-201ENST00000509054 677 ntBASIC-0.3□□□□□ -2.46
HMGA1P17096 Y_RNA.660-201ENST00000516002 120 ntBASIC-0.3□□□□□ -2.46
HMGA1P17096 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC-0.3□□□□□ -2.46
HMGA1P17096 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC-0.3□□□□□ -2.46
HMGA1P17096 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC-0.3□□□□□ -2.46
HMGA1P17096 RNU4-5P-201ENST00000607255 135 ntBASIC-0.3□□□□□ -2.46
HMGA1P17096 AL355816.2-201ENST00000610049 647 ntBASIC-0.3□□□□□ -2.46
HMGA1P17096 AC092608.3-201ENST00000625017 386 ntBASIC-0.3□□□□□ -2.46
HMGA1P17096 AL159972.1-201ENST00000625150 448 ntBASIC-0.3□□□□□ -2.46
HMGA1P17096 MTND4P12-201ENST00000498999 1377 ntBASIC-0.31□□□□□ -2.46
HMGA1P17096 RNA5SP214-201ENST00000363378 118 ntBASIC-0.31□□□□□ -2.46
HMGA1P17096 SNORA42.1-201ENST00000363515 137 ntBASIC-0.31□□□□□ -2.46
HMGA1P17096 SNORD114-9-201ENST00000364370 72 ntBASIC-0.31□□□□□ -2.46
HMGA1P17096 RNU6-1054P-201ENST00000411293 104 ntBASIC-0.31□□□□□ -2.46
HMGA1P17096 AC073261.1-201ENST00000429409 121 ntBASIC-0.31□□□□□ -2.46
HMGA1P17096 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC-0.31□□□□□ -2.46
HMGA1P17096 MTND1P33-201ENST00000446251 917 ntBASIC-0.31□□□□□ -2.46
HMGA1P17096 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC-0.31□□□□□ -2.46
HMGA1P17096 BNIP3P6-201ENST00000549284 499 ntBASIC-0.31□□□□□ -2.46
HMGA1P17096 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC-0.31□□□□□ -2.46
HMGA1P17096 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC-0.31□□□□□ -2.46
HMGA1P17096 AL353149.1-201ENST00000610667 244 ntBASIC-0.31□□□□□ -2.46
HMGA1P17096 RNU6-923P-201ENST00000364753 107 ntBASIC-0.32□□□□□ -2.46
HMGA1P17096 BTF3L4P3-201ENST00000418879 476 ntBASIC-0.32□□□□□ -2.46
HMGA1P17096 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC-0.32□□□□□ -2.46
HMGA1P17096 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC-0.32□□□□□ -2.46
HMGA1P17096 PPP1R11P2-201ENST00000423543 382 ntBASIC-0.32□□□□□ -2.46
HMGA1P17096 AL353777.1-201ENST00000425552 326 ntBASIC-0.32□□□□□ -2.46
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms