Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 TOMM20P4-201ENST00000427861 435 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 NDUFB4P6-201ENST00000436819 366 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 AC006028.1-201ENST00000438379 402 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 AL078601.1-201ENST00000444542 271 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 Z75741.1-201ENST00000446793 314 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.3□□□□□ -1.88
DKK3Q9UBP4 AC013470.1-201ENST00000453438 462 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 AC092798.1-201ENST00000458542 409 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 AC068781.1-201ENST00000488231 618 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.3□□□□□ -1.88
DKK3Q9UBP4 AC116655.1-201ENST00000508324 901 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC3.3□□□□□ -1.88
DKK3Q9UBP4 ACA59.1-201ENST00000515966 143 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 RNU6-1046P-201ENST00000516538 107 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 RNU6-703P-201ENST00000516946 107 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 SNORD116.3-201ENST00000517176 78 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
DKK3Q9UBP4 AC109446.1-201ENST00000566172 220 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 MIR5680-201ENST00000577577 84 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.3□□□□□ -1.88
DKK3Q9UBP4 BNIP3P16-201ENST00000589779 534 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 AL162713.1-201ENST00000604480 262 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 AC018889.1-201ENST00000605372 397 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 RNU6-6P-201ENST00000606623 107 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 AC007485.1-201ENST00000616755 206 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 AP003122.5-201ENST00000527668 3766 ntBASIC3.3□□□□□ -1.88
DKK3Q9UBP4 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.3□□□□□ -1.88
DKK3Q9UBP4 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
DKK3Q9UBP4 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.29□□□□□ -1.88
DKK3Q9UBP4 RNA5SP383-201ENST00000362934 120 ntBASIC3.29□□□□□ -1.88
DKK3Q9UBP4 Y_RNA.364-201ENST00000365532 101 ntBASIC3.29□□□□□ -1.88
DKK3Q9UBP4 RNU6-217P-201ENST00000384164 104 ntBASIC3.29□□□□□ -1.88
DKK3Q9UBP4 RNU6-140P-201ENST00000384566 108 ntBASIC3.29□□□□□ -1.88
DKK3Q9UBP4 MIR10A-201ENST00000385043 110 ntBASIC3.29□□□□□ -1.88
DKK3Q9UBP4 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC3.29□□□□□ -1.88
DKK3Q9UBP4 COTL1P1-201ENST00000422309 375 ntBASIC3.29□□□□□ -1.88
DKK3Q9UBP4 RPS15AP10-201ENST00000432472 382 ntBASIC3.29□□□□□ -1.88
DKK3Q9UBP4 AC099799.1-201ENST00000439809 192 ntBASIC3.29□□□□□ -1.88
DKK3Q9UBP4 RPL23AP45-201ENST00000476406 468 ntBASIC3.29□□□□□ -1.88
DKK3Q9UBP4 AC109925.1-201ENST00000478069 331 ntBASIC3.29□□□□□ -1.88
DKK3Q9UBP4 AC021146.2-201ENST00000504736 556 ntBASIC3.29□□□□□ -1.88
DKK3Q9UBP4 Y_RNA.661-201ENST00000516003 99 ntBASIC3.29□□□□□ -1.88
DKK3Q9UBP4 RNU6-572P-201ENST00000516724 80 ntBASIC3.29□□□□□ -1.88
DKK3Q9UBP4 MIR2276-201ENST00000516886 89 ntBASIC3.29□□□□□ -1.88
DKK3Q9UBP4 GNAI2P1-201ENST00000541815 315 ntBASIC3.29□□□□□ -1.88
DKK3Q9UBP4 EIF4BP1-201ENST00000554881 351 ntBASIC3.29□□□□□ -1.88
DKK3Q9UBP4 MIR5004-201ENST00000579078 107 ntBASIC3.29□□□□□ -1.88
DKK3Q9UBP4 MIR4325-201ENST00000583049 90 ntBASIC3.29□□□□□ -1.88
DKK3Q9UBP4 FTX_3.1-201ENST00000610451 147 ntBASIC3.29□□□□□ -1.88
DKK3Q9UBP4 AC006157.1-201ENST00000611750 366 ntBASIC3.29□□□□□ -1.88
DKK3Q9UBP4 AC027309.3-201ENST00000623419 351 ntBASIC3.29□□□□□ -1.88
DKK3Q9UBP4 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.29□□□□□ -1.88
DKK3Q9UBP4 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC3.29□□□□□ -1.88
DKK3Q9UBP4 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
DKK3Q9UBP4 AC092435.3-201ENST00000565538 3654 ntBASIC3.28□□□□□ -1.88
DKK3Q9UBP4 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.28□□□□□ -1.88
DKK3Q9UBP4 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.28□□□□□ -1.88
DKK3Q9UBP4 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
DKK3Q9UBP4 RPL9P7-201ENST00000330965 580 ntBASIC3.28□□□□□ -1.88
DKK3Q9UBP4 U8.8-201ENST00000365399 135 ntBASIC3.28□□□□□ -1.88
DKK3Q9UBP4 RNU6-790P-201ENST00000384479 105 ntBASIC3.28□□□□□ -1.88
DKK3Q9UBP4 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
DKK3Q9UBP4 AL513475.1-201ENST00000406602 315 ntBASIC3.28□□□□□ -1.88
DKK3Q9UBP4 RNA5SP229-201ENST00000410809 99 ntBASIC3.28□□□□□ -1.88
DKK3Q9UBP4 RPL19P1-201ENST00000411635 428 ntBASIC3.28□□□□□ -1.88
DKK3Q9UBP4 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.28□□□□□ -1.88
DKK3Q9UBP4 AL117339.3-201ENST00000418733 162 ntBASIC3.28□□□□□ -1.88
DKK3Q9UBP4 PGBD4P6-201ENST00000421501 610 ntBASIC3.28□□□□□ -1.88
DKK3Q9UBP4 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC3.28□□□□□ -1.88
DKK3Q9UBP4 AL160004.2-201ENST00000432935 350 ntBASIC3.28□□□□□ -1.88
DKK3Q9UBP4 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC3.28□□□□□ -1.88
DKK3Q9UBP4 AL513043.1-201ENST00000439124 535 ntBASIC3.28□□□□□ -1.88
DKK3Q9UBP4 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC3.28□□□□□ -1.88
DKK3Q9UBP4 RPL9P9-202ENST00000466501 579 ntBASIC3.28□□□□□ -1.88
DKK3Q9UBP4 RPL17P19-201ENST00000489069 552 ntBASIC3.28□□□□□ -1.88
DKK3Q9UBP4 AC015911.1-201ENST00000495111 156 ntBASIC3.28□□□□□ -1.88
DKK3Q9UBP4 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.28□□□□□ -1.88
DKK3Q9UBP4 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.28□□□□□ -1.88
DKK3Q9UBP4 AL117187.1-201ENST00000555482 181 ntBASIC3.28□□□□□ -1.88
DKK3Q9UBP4 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC3.28□□□□□ -1.88
DKK3Q9UBP4 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.28□□□□□ -1.88
DKK3Q9UBP4 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC3.28□□□□□ -1.88
DKK3Q9UBP4 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
DKK3Q9UBP4 AC008121.1-201ENST00000603244 268 ntBASIC3.28□□□□□ -1.88
DKK3Q9UBP4 AL138880.2-201ENST00000616214 239 ntBASIC3.28□□□□□ -1.88
DKK3Q9UBP4 AC138627.2-201ENST00000624202 601 ntBASIC3.28□□□□□ -1.88
DKK3Q9UBP4 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.27□□□□□ -1.89
DKK3Q9UBP4 AL353743.1-202ENST00000431724 1695 ntBASIC3.27□□□□□ -1.89
DKK3Q9UBP4 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.27□□□□□ -1.89
DKK3Q9UBP4 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.27□□□□□ -1.89
DKK3Q9UBP4 MIR30E-201ENST00000362104 92 ntBASIC3.27□□□□□ -1.89
DKK3Q9UBP4 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
DKK3Q9UBP4 RNU6-463P-201ENST00000384340 107 ntBASIC3.27□□□□□ -1.89
DKK3Q9UBP4 RNU6-933P-201ENST00000384424 107 ntBASIC3.27□□□□□ -1.89
DKK3Q9UBP4 AL591034.2-201ENST00000402839 359 ntBASIC3.27□□□□□ -1.89
DKK3Q9UBP4 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.27□□□□□ -1.89
DKK3Q9UBP4 BX276092.3-201ENST00000424182 230 ntBASIC3.27□□□□□ -1.89
DKK3Q9UBP4 AC007560.1-201ENST00000426912 237 ntBASIC3.27□□□□□ -1.89
DKK3Q9UBP4 RPL23AP50-201ENST00000434149 455 ntBASIC3.27□□□□□ -1.89
DKK3Q9UBP4 AC244505.4-201ENST00000434905 287 ntBASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 121.8 ms