Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC3.1□□□□□ -1.91
EBF3Q9H4W6 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC3.1□□□□□ -1.91
EBF3Q9H4W6 ARL5AP4-201ENST00000430731 512 ntBASIC3.1□□□□□ -1.91
EBF3Q9H4W6 AL135938.1-201ENST00000443141 297 ntBASIC3.1□□□□□ -1.91
EBF3Q9H4W6 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.1□□□□□ -1.91
EBF3Q9H4W6 AC112492.4-201ENST00000456549 352 ntBASIC3.1□□□□□ -1.91
EBF3Q9H4W6 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC3.1□□□□□ -1.91
EBF3Q9H4W6 AC026801.1-201ENST00000497178 464 ntBASIC3.1□□□□□ -1.91
EBF3Q9H4W6 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC3.1□□□□□ -1.91
EBF3Q9H4W6 AC096745.1-201ENST00000509945 370 ntBASIC3.1□□□□□ -1.91
EBF3Q9H4W6 AL359273.1-201ENST00000510918 627 ntBASIC3.1□□□□□ -1.91
EBF3Q9H4W6 SCGB1D5P-201ENST00000515134 247 ntBASIC3.1□□□□□ -1.91
EBF3Q9H4W6 RNA5SP356-201ENST00000515972 94 ntBASIC3.1□□□□□ -1.91
EBF3Q9H4W6 SNORA31.8-201ENST00000516327 108 ntBASIC3.1□□□□□ -1.91
EBF3Q9H4W6 IL7-206ENST00000520269 456 ntTSL 3 BASIC3.1□□□□□ -1.91
EBF3Q9H4W6 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.1□□□□□ -1.91
EBF3Q9H4W6 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC3.1□□□□□ -1.91
EBF3Q9H4W6 CYCSP27-201ENST00000527643 293 ntBASIC3.1□□□□□ -1.91
EBF3Q9H4W6 GNAI2P1-201ENST00000541815 315 ntBASIC3.1□□□□□ -1.91
EBF3Q9H4W6 AC026470.2-201ENST00000561492 181 ntBASIC3.1□□□□□ -1.91
EBF3Q9H4W6 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.1□□□□□ -1.91
EBF3Q9H4W6 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC3.1□□□□□ -1.91
EBF3Q9H4W6 ELOCP5-201ENST00000604924 333 ntBASIC3.1□□□□□ -1.91
EBF3Q9H4W6 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.1□□□□□ -1.91
EBF3Q9H4W6 AC062037.2-201ENST00000610137 73 ntBASIC3.1□□□□□ -1.91
EBF3Q9H4W6 AC078938.1-201ENST00000620993 318 ntBASIC3.1□□□□□ -1.91
EBF3Q9H4W6 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.1□□□□□ -1.91
EBF3Q9H4W6 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.1□□□□□ -1.91
EBF3Q9H4W6 AC110774.1-201ENST00000623567 2018 ntBASIC3.1□□□□□ -1.91
EBF3Q9H4W6 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.09□□□□□ -1.91
EBF3Q9H4W6 Y_RNA.151-201ENST00000363566 112 ntBASIC3.09□□□□□ -1.91
EBF3Q9H4W6 RNU6-371P-201ENST00000364283 108 ntBASIC3.09□□□□□ -1.91
EBF3Q9H4W6 Y_RNA.257-201ENST00000364596 102 ntBASIC3.09□□□□□ -1.91
EBF3Q9H4W6 RNU6-45P-201ENST00000384471 107 ntBASIC3.09□□□□□ -1.91
EBF3Q9H4W6 RNU2-23P-201ENST00000410545 195 ntBASIC3.09□□□□□ -1.91
EBF3Q9H4W6 RNA5SP344-201ENST00000411081 104 ntBASIC3.09□□□□□ -1.91
EBF3Q9H4W6 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
EBF3Q9H4W6 RPL27AP8-201ENST00000424277 446 ntBASIC3.09□□□□□ -1.91
EBF3Q9H4W6 TRIAP1P1-201ENST00000427062 225 ntBASIC3.09□□□□□ -1.91
EBF3Q9H4W6 SUMO1P3-201ENST00000439961 304 ntBASIC3.09□□□□□ -1.91
EBF3Q9H4W6 RPL37P6-201ENST00000460682 294 ntBASIC3.09□□□□□ -1.91
EBF3Q9H4W6 RPL7P5-201ENST00000471472 736 ntBASIC3.09□□□□□ -1.91
EBF3Q9H4W6 AC068781.1-201ENST00000488231 618 ntBASIC3.09□□□□□ -1.91
EBF3Q9H4W6 RNA5SP367-201ENST00000516557 118 ntBASIC3.09□□□□□ -1.91
EBF3Q9H4W6 RNA5SP468-201ENST00000516782 93 ntBASIC3.09□□□□□ -1.91
EBF3Q9H4W6 AC023442.1-201ENST00000531247 422 ntBASIC3.09□□□□□ -1.91
EBF3Q9H4W6 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC3.09□□□□□ -1.91
EBF3Q9H4W6 MIR15A-201ENST00000607334 83 ntBASIC3.09□□□□□ -1.91
EBF3Q9H4W6 AL591516.1-201ENST00000611326 274 ntBASIC3.09□□□□□ -1.91
EBF3Q9H4W6 AL606534.2-204ENST00000635008 178 ntBASIC3.09□□□□□ -1.91
EBF3Q9H4W6 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.09□□□□□ -1.91
EBF3Q9H4W6 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
EBF3Q9H4W6 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
EBF3Q9H4W6 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC3.08□□□□□ -1.92
EBF3Q9H4W6 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
EBF3Q9H4W6 OR4G2P-202ENST00000641004 1759 ntBASIC3.08□□□□□ -1.92
EBF3Q9H4W6 Y_RNA.210-201ENST00000364161 110 ntBASIC3.08□□□□□ -1.92
EBF3Q9H4W6 SNORA41-201ENST00000384675 132 ntBASIC3.08□□□□□ -1.92
EBF3Q9H4W6 Y_RNA.556-201ENST00000384677 113 ntBASIC3.08□□□□□ -1.92
EBF3Q9H4W6 RPL21P1-201ENST00000399532 476 ntBASIC3.08□□□□□ -1.92
EBF3Q9H4W6 MIR548I3-201ENST00000408378 149 ntBASIC3.08□□□□□ -1.92
EBF3Q9H4W6 MIR548I1-201ENST00000408810 149 ntBASIC3.08□□□□□ -1.92
EBF3Q9H4W6 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.08□□□□□ -1.92
EBF3Q9H4W6 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.08□□□□□ -1.92
EBF3Q9H4W6 AL356867.1-201ENST00000429623 299 ntBASIC3.08□□□□□ -1.92
EBF3Q9H4W6 HMGB1P9-201ENST00000429856 646 ntBASIC3.08□□□□□ -1.92
EBF3Q9H4W6 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC3.08□□□□□ -1.92
EBF3Q9H4W6 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC3.08□□□□□ -1.92
EBF3Q9H4W6 DYNLT3P2-201ENST00000442517 295 ntBASIC3.08□□□□□ -1.92
EBF3Q9H4W6 RPS24P13-201ENST00000442520 397 ntBASIC3.08□□□□□ -1.92
EBF3Q9H4W6 RPS20P22-201ENST00000473700 357 ntBASIC3.08□□□□□ -1.92
EBF3Q9H4W6 AL049874.1-201ENST00000489560 388 ntBASIC3.08□□□□□ -1.92
EBF3Q9H4W6 AC105758.1-201ENST00000506038 399 ntBASIC3.08□□□□□ -1.92
EBF3Q9H4W6 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.08□□□□□ -1.92
EBF3Q9H4W6 MTND1P19-201ENST00000511780 315 ntBASIC3.08□□□□□ -1.92
EBF3Q9H4W6 RN7SKP132-201ENST00000516001 208 ntBASIC3.08□□□□□ -1.92
EBF3Q9H4W6 RNU6-1143P-201ENST00000516125 104 ntBASIC3.08□□□□□ -1.92
EBF3Q9H4W6 RNU6-914P-201ENST00000516749 109 ntBASIC3.08□□□□□ -1.92
EBF3Q9H4W6 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.08□□□□□ -1.92
EBF3Q9H4W6 AC131281.1-201ENST00000522984 164 ntBASIC3.08□□□□□ -1.92
EBF3Q9H4W6 AP002826.1-201ENST00000608835 315 ntBASIC3.08□□□□□ -1.92
EBF3Q9H4W6 AC107294.1-201ENST00000609524 467 ntBASIC3.08□□□□□ -1.92
EBF3Q9H4W6 AL021879.1-201ENST00000611756 288 ntBASIC3.08□□□□□ -1.92
EBF3Q9H4W6 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC3.08□□□□□ -1.92
EBF3Q9H4W6 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
EBF3Q9H4W6 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
EBF3Q9H4W6 ZNF72P-201ENST00000425869 1908 ntBASIC3.07□□□□□ -1.92
EBF3Q9H4W6 AC073325.2-201ENST00000339545 159 ntBASIC3.07□□□□□ -1.92
EBF3Q9H4W6 RNU6-50P-201ENST00000362356 103 ntBASIC3.07□□□□□ -1.92
EBF3Q9H4W6 Y_RNA.26-201ENST00000362539 101 ntBASIC3.07□□□□□ -1.92
EBF3Q9H4W6 Y_RNA.222-201ENST00000364264 102 ntBASIC3.07□□□□□ -1.92
EBF3Q9H4W6 Y_RNA.447-201ENST00000384184 113 ntBASIC3.07□□□□□ -1.92
EBF3Q9H4W6 SNORD73A-201ENST00000386062 65 ntBASIC3.07□□□□□ -1.92
EBF3Q9H4W6 RNA5SP129-201ENST00000410276 118 ntBASIC3.07□□□□□ -1.92
EBF3Q9H4W6 RNU6-101P-201ENST00000410323 104 ntBASIC3.07□□□□□ -1.92
EBF3Q9H4W6 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
EBF3Q9H4W6 RPS15AP10-201ENST00000432472 382 ntBASIC3.07□□□□□ -1.92
EBF3Q9H4W6 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC3.07□□□□□ -1.92
EBF3Q9H4W6 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.07□□□□□ -1.92
EBF3Q9H4W6 SUMO1P2-201ENST00000452524 304 ntBASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 128.4 ms