Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC2.49□□□□□ -2.01
USP28Q96RU2 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.49□□□□□ -2.01
USP28Q96RU2 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC2.49□□□□□ -2.01
USP28Q96RU2 PMCHL2-203ENST00000457791 237 ntBASIC2.49□□□□□ -2.01
USP28Q96RU2 RNU7-167P-201ENST00000459160 62 ntBASIC2.49□□□□□ -2.01
USP28Q96RU2 OARD1-209ENST00000471367 401 ntTSL 2 BASIC2.49□□□□□ -2.01
USP28Q96RU2 TRBV1-201ENST00000476502 284 ntBASIC2.49□□□□□ -2.01
USP28Q96RU2 RPL23AP49-201ENST00000492925 468 ntBASIC2.49□□□□□ -2.01
USP28Q96RU2 RPS27AP10-201ENST00000496103 208 ntBASIC2.49□□□□□ -2.01
USP28Q96RU2 AC091951.2-201ENST00000500762 203 ntBASIC2.49□□□□□ -2.01
USP28Q96RU2 AC008628.2-201ENST00000502605 298 ntBASIC2.49□□□□□ -2.01
USP28Q96RU2 AC091885.1-201ENST00000506658 268 ntBASIC2.49□□□□□ -2.01
USP28Q96RU2 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC2.49□□□□□ -2.01
USP28Q96RU2 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.49□□□□□ -2.01
USP28Q96RU2 FAM206BP-201ENST00000510179 541 ntBASIC2.49□□□□□ -2.01
USP28Q96RU2 AC010486.1-201ENST00000511793 424 ntBASIC2.49□□□□□ -2.01
USP28Q96RU2 AC104136.1-201ENST00000512969 394 ntBASIC2.49□□□□□ -2.01
USP28Q96RU2 RNU6-189P-201ENST00000516120 101 ntBASIC2.49□□□□□ -2.01
USP28Q96RU2 SCARNA17.1-201ENST00000516211 143 ntBASIC2.49□□□□□ -2.01
USP28Q96RU2 SCARNA17.2-201ENST00000516334 143 ntBASIC2.49□□□□□ -2.01
USP28Q96RU2 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.49□□□□□ -2.01
USP28Q96RU2 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC2.49□□□□□ -2.01
USP28Q96RU2 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC2.49□□□□□ -2.01
USP28Q96RU2 LRRC37A5P-203ENST00000580181 585 ntBASIC2.49□□□□□ -2.01
USP28Q96RU2 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.49□□□□□ -2.01
USP28Q96RU2 SCARNA17.4-201ENST00000614296 143 ntBASIC2.49□□□□□ -2.01
USP28Q96RU2 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
USP28Q96RU2 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.49□□□□□ -2.01
USP28Q96RU2 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.48□□□□□ -2.01
USP28Q96RU2 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
USP28Q96RU2 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
USP28Q96RU2 Y_RNA.70-201ENST00000362886 110 ntBASIC2.48□□□□□ -2.01
USP28Q96RU2 SNORD14B-201ENST00000364533 90 ntBASIC2.48□□□□□ -2.01
USP28Q96RU2 XGY1-201ENST00000381172 446 ntBASIC2.48□□□□□ -2.01
USP28Q96RU2 Y_RNA.399-201ENST00000383955 105 ntBASIC2.48□□□□□ -2.01
USP28Q96RU2 RNU1-73P-201ENST00000383971 164 ntBASIC2.48□□□□□ -2.01
USP28Q96RU2 RNU6-831P-201ENST00000384548 107 ntBASIC2.48□□□□□ -2.01
USP28Q96RU2 RNU6-658P-201ENST00000384606 106 ntBASIC2.48□□□□□ -2.01
USP28Q96RU2 MIR888-201ENST00000401186 77 ntBASIC2.48□□□□□ -2.01
USP28Q96RU2 RNU6-607P-201ENST00000411283 108 ntBASIC2.48□□□□□ -2.01
USP28Q96RU2 AL353621.1-201ENST00000418219 243 ntBASIC2.48□□□□□ -2.01
USP28Q96RU2 PDCL2P1-201ENST00000419302 352 ntBASIC2.48□□□□□ -2.01
USP28Q96RU2 PGBD4P6-201ENST00000421501 610 ntBASIC2.48□□□□□ -2.01
USP28Q96RU2 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC2.48□□□□□ -2.01
USP28Q96RU2 AL353729.1-201ENST00000425044 720 ntBASIC2.48□□□□□ -2.01
USP28Q96RU2 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.48□□□□□ -2.01
USP28Q96RU2 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC2.48□□□□□ -2.01
USP28Q96RU2 USP9YP8-201ENST00000441913 500 ntBASIC2.48□□□□□ -2.01
USP28Q96RU2 RPL7P43-201ENST00000478876 753 ntBASIC2.48□□□□□ -2.01
USP28Q96RU2 RNU5F-8P-201ENST00000515941 111 ntBASIC2.48□□□□□ -2.01
USP28Q96RU2 SNORA25.17-201ENST00000517184 124 ntBASIC2.48□□□□□ -2.01
USP28Q96RU2 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC2.48□□□□□ -2.01
USP28Q96RU2 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.48□□□□□ -2.01
USP28Q96RU2 MIR5692A1-201ENST00000580523 69 ntBASIC2.48□□□□□ -2.01
USP28Q96RU2 MIR3942-201ENST00000585264 109 ntBASIC2.48□□□□□ -2.01
USP28Q96RU2 AC123912.5-201ENST00000605470 343 ntBASIC2.48□□□□□ -2.01
USP28Q96RU2 AC009994.1-201ENST00000606889 253 ntBASIC2.48□□□□□ -2.01
USP28Q96RU2 U2.17-201ENST00000611454 95 ntBASIC2.48□□□□□ -2.01
USP28Q96RU2 MIR6895-201ENST00000613497 78 ntBASIC2.48□□□□□ -2.01
USP28Q96RU2 AC103705.1-201ENST00000619013 241 ntBASIC2.48□□□□□ -2.01
USP28Q96RU2 AC009248.2-201ENST00000619826 254 ntBASIC2.48□□□□□ -2.01
USP28Q96RU2 AL031601.2-202ENST00000622650 282 ntBASIC2.48□□□□□ -2.01
USP28Q96RU2 AL133216.2-202ENST00000634512 349 ntBASIC2.48□□□□□ -2.01
USP28Q96RU2 Z82209.1-201ENST00000422141 2135 ntBASIC2.48□□□□□ -2.01
USP28Q96RU2 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.48□□□□□ -2.01
USP28Q96RU2 AC010329.5-201ENST00000623497 2174 ntBASIC2.47□□□□□ -2.01
USP28Q96RU2 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
USP28Q96RU2 CBX3P1-201ENST00000325243 554 ntBASIC2.47□□□□□ -2.01
USP28Q96RU2 AC138393.1-203ENST00000327086 343 ntBASIC2.47□□□□□ -2.01
USP28Q96RU2 RNU6-82P-201ENST00000363970 107 ntBASIC2.47□□□□□ -2.01
USP28Q96RU2 RNU6-266P-201ENST00000364225 107 ntBASIC2.47□□□□□ -2.01
USP28Q96RU2 RNU5E-4P-201ENST00000364931 120 ntBASIC2.47□□□□□ -2.01
USP28Q96RU2 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.47□□□□□ -2.01
USP28Q96RU2 RNU2-49P-201ENST00000410666 184 ntBASIC2.47□□□□□ -2.01
USP28Q96RU2 Y_RNA.623-201ENST00000411128 95 ntBASIC2.47□□□□□ -2.01
USP28Q96RU2 AC023141.4-201ENST00000412031 328 ntBASIC2.47□□□□□ -2.01
USP28Q96RU2 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC2.47□□□□□ -2.01
USP28Q96RU2 snoU109.2-201ENST00000459316 135 ntBASIC2.47□□□□□ -2.01
USP28Q96RU2 AC007547.1-201ENST00000462177 490 ntBASIC2.47□□□□□ -2.01
USP28Q96RU2 HMGB3P3-201ENST00000510526 400 ntBASIC2.47□□□□□ -2.01
USP28Q96RU2 LRRC34P2-201ENST00000514850 553 ntBASIC2.47□□□□□ -2.01
USP28Q96RU2 RNU4-49P-201ENST00000516080 140 ntBASIC2.47□□□□□ -2.01
USP28Q96RU2 RNA5SP200-201ENST00000516360 103 ntBASIC2.47□□□□□ -2.01
USP28Q96RU2 RNA5SP82-201ENST00000516707 92 ntBASIC2.47□□□□□ -2.01
USP28Q96RU2 RNU6-703P-201ENST00000516946 107 ntBASIC2.47□□□□□ -2.01
USP28Q96RU2 AP000763.2-201ENST00000540641 163 ntBASIC2.47□□□□□ -2.01
USP28Q96RU2 PSMA3P-201ENST00000555485 635 ntBASIC2.47□□□□□ -2.01
USP28Q96RU2 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC2.47□□□□□ -2.01
USP28Q96RU2 AC138627.2-201ENST00000624202 601 ntBASIC2.47□□□□□ -2.01
USP28Q96RU2 U6.99-201ENST00000637524 83 ntBASIC2.47□□□□□ -2.01
USP28Q96RU2 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.46□□□□□ -2.02
USP28Q96RU2 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
USP28Q96RU2 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
USP28Q96RU2 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.46□□□□□ -2.02
USP28Q96RU2 RNU1-52P-201ENST00000384190 164 ntBASIC2.46□□□□□ -2.02
USP28Q96RU2 MIR10A-201ENST00000385043 110 ntBASIC2.46□□□□□ -2.02
USP28Q96RU2 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
USP28Q96RU2 AC016831.2-201ENST00000417179 352 ntBASIC2.46□□□□□ -2.02
USP28Q96RU2 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.46□□□□□ -2.02
USP28Q96RU2 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC2.46□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms