Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 RNU5E-7P-201ENST00000365290 117 ntBASIC3.44□□□□□ -1.86
SMARCA1P28370 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.44□□□□□ -1.86
SMARCA1P28370 AC083906.5-201ENST00000503722 328 ntBASIC3.44□□□□□ -1.86
SMARCA1P28370 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC3.44□□□□□ -1.86
SMARCA1P28370 RNU6-377P-201ENST00000515965 102 ntBASIC3.44□□□□□ -1.86
SMARCA1P28370 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC3.44□□□□□ -1.86
SMARCA1P28370 AC021739.1-201ENST00000559631 174 ntBASIC3.44□□□□□ -1.86
SMARCA1P28370 AC020661.2-201ENST00000560114 134 ntBASIC3.44□□□□□ -1.86
SMARCA1P28370 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.44□□□□□ -1.86
SMARCA1P28370 AC024153.1-201ENST00000603103 365 ntBASIC3.44□□□□□ -1.86
SMARCA1P28370 AC009314.1-201ENST00000603871 304 ntBASIC3.44□□□□□ -1.86
SMARCA1P28370 AL080274.1-201ENST00000605565 220 ntBASIC3.44□□□□□ -1.86
SMARCA1P28370 AC011890.2-201ENST00000613393 294 ntBASIC3.44□□□□□ -1.86
SMARCA1P28370 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.43□□□□□ -1.86
SMARCA1P28370 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.43□□□□□ -1.86
SMARCA1P28370 RPL9P7-201ENST00000330965 580 ntBASIC3.43□□□□□ -1.86
SMARCA1P28370 MIR148B-201ENST00000362252 99 ntBASIC3.43□□□□□ -1.86
SMARCA1P28370 Y_RNA.146-201ENST00000363549 102 ntBASIC3.43□□□□□ -1.86
SMARCA1P28370 RNU6-1317P-201ENST00000364582 104 ntBASIC3.43□□□□□ -1.86
SMARCA1P28370 RNU1-100P-201ENST00000365255 165 ntBASIC3.43□□□□□ -1.86
SMARCA1P28370 SNORA44-201ENST00000384584 132 ntBASIC3.43□□□□□ -1.86
SMARCA1P28370 RNU6-331P-201ENST00000384724 107 ntBASIC3.43□□□□□ -1.86
SMARCA1P28370 RPL21P3-201ENST00000395517 478 ntBASIC3.43□□□□□ -1.86
SMARCA1P28370 AL031121.1-201ENST00000406553 254 ntBASIC3.43□□□□□ -1.86
SMARCA1P28370 AC023141.4-201ENST00000412031 328 ntBASIC3.43□□□□□ -1.86
SMARCA1P28370 AL133396.1-201ENST00000432048 687 ntBASIC3.43□□□□□ -1.86
SMARCA1P28370 AL513043.1-201ENST00000439124 535 ntBASIC3.43□□□□□ -1.86
SMARCA1P28370 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC3.43□□□□□ -1.86
SMARCA1P28370 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC3.43□□□□□ -1.86
SMARCA1P28370 AC146507.2-201ENST00000460608 476 ntBASIC3.43□□□□□ -1.86
SMARCA1P28370 RPL9P9-202ENST00000466501 579 ntBASIC3.43□□□□□ -1.86
SMARCA1P28370 RN7SL633P-201ENST00000488974 297 ntBASIC3.43□□□□□ -1.86
SMARCA1P28370 AK3P2-201ENST00000507976 429 ntBASIC3.43□□□□□ -1.86
SMARCA1P28370 RNU6-581P-201ENST00000516214 105 ntBASIC3.43□□□□□ -1.86
SMARCA1P28370 RNA5SP384-201ENST00000516615 116 ntBASIC3.43□□□□□ -1.86
SMARCA1P28370 AL121821.2-201ENST00000556081 394 ntBASIC3.43□□□□□ -1.86
SMARCA1P28370 MIR3976-201ENST00000606807 139 ntBASIC3.43□□□□□ -1.86
SMARCA1P28370 AC005046.1-201ENST00000608515 625 ntBASIC3.43□□□□□ -1.86
SMARCA1P28370 PISRT1.1-201ENST00000616930 107 ntBASIC3.43□□□□□ -1.86
SMARCA1P28370 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.43□□□□□ -1.86
SMARCA1P28370 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.43□□□□□ -1.86
SMARCA1P28370 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.43□□□□□ -1.86
SMARCA1P28370 MTND5P19-201ENST00000424872 1794 ntBASIC3.43□□□□□ -1.86
SMARCA1P28370 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC3.43□□□□□ -1.86
SMARCA1P28370 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.42□□□□□ -1.86
SMARCA1P28370 RNU6-336P-201ENST00000364891 107 ntBASIC3.42□□□□□ -1.86
SMARCA1P28370 RNU6-890P-201ENST00000384121 107 ntBASIC3.42□□□□□ -1.86
SMARCA1P28370 RNA5SP354-201ENST00000391247 136 ntBASIC3.42□□□□□ -1.86
SMARCA1P28370 RN7SKP123-201ENST00000410732 291 ntBASIC3.42□□□□□ -1.86
SMARCA1P28370 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.42□□□□□ -1.86
SMARCA1P28370 UQCRHP3-201ENST00000451503 251 ntBASIC3.42□□□□□ -1.86
SMARCA1P28370 AC128713.1-201ENST00000471495 306 ntBASIC3.42□□□□□ -1.86
SMARCA1P28370 RNU4ATAC7P-201ENST00000516280 125 ntBASIC3.42□□□□□ -1.86
SMARCA1P28370 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.42□□□□□ -1.86
SMARCA1P28370 AC011471.1-201ENST00000585766 187 ntBASIC3.42□□□□□ -1.86
SMARCA1P28370 USP12-203ENST00000620323 349 ntTSL 3 BASIC3.42□□□□□ -1.86
SMARCA1P28370 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC3.42□□□□□ -1.86
SMARCA1P28370 AC092608.2-201ENST00000624427 218 ntBASIC3.42□□□□□ -1.86
SMARCA1P28370 AC110079.1-202ENST00000635213 138 ntBASIC3.42□□□□□ -1.86
SMARCA1P28370 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
SMARCA1P28370 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.42□□□□□ -1.86
SMARCA1P28370 AC110491.1-201ENST00000562191 2010 ntBASIC3.42□□□□□ -1.86
SMARCA1P28370 CDC27P3-201ENST00000635418 1910 ntBASIC3.42□□□□□ -1.86
SMARCA1P28370 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
SMARCA1P28370 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.41□□□□□ -1.86
SMARCA1P28370 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
SMARCA1P28370 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.41□□□□□ -1.86
SMARCA1P28370 Y_RNA.197-201ENST00000364004 102 ntBASIC3.41□□□□□ -1.86
SMARCA1P28370 Y_RNA.395-201ENST00000383945 109 ntBASIC3.41□□□□□ -1.86
SMARCA1P28370 RNU6-790P-201ENST00000384479 105 ntBASIC3.41□□□□□ -1.86
SMARCA1P28370 UBA52P6-201ENST00000399822 382 ntBASIC3.41□□□□□ -1.86
SMARCA1P28370 RPS29P13-201ENST00000402041 169 ntBASIC3.41□□□□□ -1.86
SMARCA1P28370 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.41□□□□□ -1.86
SMARCA1P28370 Z82205.1-201ENST00000428456 297 ntBASIC3.41□□□□□ -1.86
SMARCA1P28370 AC104332.2-201ENST00000429959 156 ntBASIC3.41□□□□□ -1.86
SMARCA1P28370 AL139132.1-201ENST00000431587 344 ntBASIC3.41□□□□□ -1.86
SMARCA1P28370 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.41□□□□□ -1.86
SMARCA1P28370 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC3.41□□□□□ -1.86
SMARCA1P28370 AC008571.1-201ENST00000467232 300 ntBASIC3.41□□□□□ -1.86
SMARCA1P28370 AC022634.1-201ENST00000520765 532 ntBASIC3.41□□□□□ -1.86
SMARCA1P28370 AP004607.1-201ENST00000524456 203 ntBASIC3.41□□□□□ -1.86
SMARCA1P28370 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.41□□□□□ -1.86
SMARCA1P28370 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC3.41□□□□□ -1.86
SMARCA1P28370 AC010653.1-201ENST00000571108 881 ntBASIC3.41□□□□□ -1.86
SMARCA1P28370 AC134503.1-201ENST00000633048 54 ntBASIC3.41□□□□□ -1.86
SMARCA1P28370 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
SMARCA1P28370 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
SMARCA1P28370 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
SMARCA1P28370 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.86
SMARCA1P28370 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.4□□□□□ -1.86
SMARCA1P28370 MTND5P10-201ENST00000603719 1809 ntBASIC3.4□□□□□ -1.86
SMARCA1P28370 AC008264.2-201ENST00000610193 3731 ntBASIC3.4□□□□□ -1.86
SMARCA1P28370 AC099654.7-201ENST00000635788 2127 ntBASIC3.4□□□□□ -1.86
SMARCA1P28370 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.4□□□□□ -1.86
SMARCA1P28370 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.87
SMARCA1P28370 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.87
SMARCA1P28370 DLEU2_6.3-201ENST00000340052 136 ntBASIC3.4□□□□□ -1.87
SMARCA1P28370 ZBTB8OSP1-201ENST00000342688 498 ntBASIC3.4□□□□□ -1.87
SMARCA1P28370 Y_RNA.128-201ENST00000363391 112 ntBASIC3.4□□□□□ -1.87
SMARCA1P28370 Y_RNA.326-201ENST00000365176 113 ntBASIC3.4□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 118.6 ms