Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 RNU2-69P-201ENST00000516061 100 ntBASIC3.35□□□□□ -1.87
COL3A1P02461 Y_RNA.680-201ENST00000516441 93 ntBASIC3.35□□□□□ -1.87
COL3A1P02461 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
COL3A1P02461 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
COL3A1P02461 AP003385.6-201ENST00000531603 374 ntBASIC3.35□□□□□ -1.87
COL3A1P02461 HMGB3P26-201ENST00000560051 582 ntBASIC3.35□□□□□ -1.87
COL3A1P02461 MIR4524B-201ENST00000581569 115 ntBASIC3.35□□□□□ -1.87
COL3A1P02461 AC025588.3-201ENST00000604182 274 ntBASIC3.35□□□□□ -1.87
COL3A1P02461 AL158032.1-201ENST00000605401 106 ntBASIC3.35□□□□□ -1.87
COL3A1P02461 HMGN2P28-201ENST00000606102 262 ntBASIC3.35□□□□□ -1.87
COL3A1P02461 AL359547.2-201ENST00000615810 418 ntBASIC3.35□□□□□ -1.87
COL3A1P02461 AC123768.4-201ENST00000616244 701 ntBASIC3.35□□□□□ -1.87
COL3A1P02461 SNHG22-203ENST00000617833 660 ntBASIC3.35□□□□□ -1.87
COL3A1P02461 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
COL3A1P02461 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
COL3A1P02461 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
COL3A1P02461 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
COL3A1P02461 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
COL3A1P02461 Y_RNA.14-201ENST00000362415 103 ntBASIC3.34□□□□□ -1.88
COL3A1P02461 Y_RNA.106-201ENST00000363189 100 ntBASIC3.34□□□□□ -1.88
COL3A1P02461 Y_RNA.222-201ENST00000364264 102 ntBASIC3.34□□□□□ -1.88
COL3A1P02461 RNU6-306P-201ENST00000384617 107 ntBASIC3.34□□□□□ -1.88
COL3A1P02461 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.88
COL3A1P02461 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.34□□□□□ -1.88
COL3A1P02461 TRAPPC2P5-201ENST00000426293 308 ntBASIC3.34□□□□□ -1.88
COL3A1P02461 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC3.34□□□□□ -1.88
COL3A1P02461 MTND5P15-201ENST00000434246 349 ntBASIC3.34□□□□□ -1.88
COL3A1P02461 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC3.34□□□□□ -1.88
COL3A1P02461 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.34□□□□□ -1.88
COL3A1P02461 GAPDHP27-201ENST00000447427 1020 ntBASIC3.34□□□□□ -1.88
COL3A1P02461 RPL9P32-201ENST00000464118 620 ntBASIC3.34□□□□□ -1.88
COL3A1P02461 RPL39P38-201ENST00000467018 153 ntBASIC3.34□□□□□ -1.88
COL3A1P02461 AC117503.1-201ENST00000472241 394 ntBASIC3.34□□□□□ -1.88
COL3A1P02461 AC093852.1-201ENST00000503587 266 ntBASIC3.34□□□□□ -1.88
COL3A1P02461 AC022447.4-201ENST00000504053 364 ntBASIC3.34□□□□□ -1.88
COL3A1P02461 RNU6-182P-201ENST00000516970 105 ntBASIC3.34□□□□□ -1.88
COL3A1P02461 CKS1BP7-201ENST00000522230 235 ntBASIC3.34□□□□□ -1.88
COL3A1P02461 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC3.34□□□□□ -1.88
COL3A1P02461 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC3.34□□□□□ -1.88
COL3A1P02461 RPL23AP84-201ENST00000571193 464 ntBASIC3.34□□□□□ -1.88
COL3A1P02461 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC3.34□□□□□ -1.88
COL3A1P02461 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC3.34□□□□□ -1.88
COL3A1P02461 AL589994.2-201ENST00000621124 579 ntBASIC3.34□□□□□ -1.88
COL3A1P02461 AC091925.2-201ENST00000625059 256 ntBASIC3.34□□□□□ -1.88
COL3A1P02461 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
COL3A1P02461 Y_RNA.276-201ENST00000364732 109 ntBASIC3.33□□□□□ -1.88
COL3A1P02461 RNU6-715P-201ENST00000365204 103 ntBASIC3.33□□□□□ -1.88
COL3A1P02461 SMIM11P1-201ENST00000369586 178 ntBASIC3.33□□□□□ -1.88
COL3A1P02461 Y_RNA.551-201ENST00000384661 102 ntBASIC3.33□□□□□ -1.88
COL3A1P02461 AL359511.1-201ENST00000402970 211 ntBASIC3.33□□□□□ -1.88
COL3A1P02461 UBE2FP1-201ENST00000416536 447 ntBASIC3.33□□□□□ -1.88
COL3A1P02461 MRPS18CP6-201ENST00000423587 223 ntBASIC3.33□□□□□ -1.88
COL3A1P02461 UBE2V1P4-201ENST00000425374 344 ntBASIC3.33□□□□□ -1.88
COL3A1P02461 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC3.33□□□□□ -1.88
COL3A1P02461 MTCO3P8-201ENST00000453691 755 ntBASIC3.33□□□□□ -1.88
COL3A1P02461 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC3.33□□□□□ -1.88
COL3A1P02461 TRBV12-1-201ENST00000479785 344 ntBASIC3.33□□□□□ -1.88
COL3A1P02461 RPL17P19-201ENST00000489069 552 ntBASIC3.33□□□□□ -1.88
COL3A1P02461 GZMAP1-201ENST00000503054 631 ntBASIC3.33□□□□□ -1.88
COL3A1P02461 AC025465.3-201ENST00000510570 311 ntBASIC3.33□□□□□ -1.88
COL3A1P02461 Y_RNA.673-201ENST00000516306 88 ntBASIC3.33□□□□□ -1.88
COL3A1P02461 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC3.33□□□□□ -1.88
COL3A1P02461 SETP7-201ENST00000552169 453 ntBASIC3.33□□□□□ -1.88
COL3A1P02461 TRAV37-201ENST00000553906 342 ntBASIC3.33□□□□□ -1.88
COL3A1P02461 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.33□□□□□ -1.88
COL3A1P02461 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
COL3A1P02461 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC3.33□□□□□ -1.88
COL3A1P02461 AL365361.1-201ENST00000566942 3481 ntBASIC3.33□□□□□ -1.88
COL3A1P02461 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL3A1P02461 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC3.33□□□□□ -1.88
COL3A1P02461 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
COL3A1P02461 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
COL3A1P02461 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.32□□□□□ -1.88
COL3A1P02461 Y_RNA.376-201ENST00000365638 108 ntBASIC3.32□□□□□ -1.88
COL3A1P02461 SNORD51-201ENST00000384320 80 ntBASIC3.32□□□□□ -1.88
COL3A1P02461 Y_RNA.478-201ENST00000384358 107 ntBASIC3.32□□□□□ -1.88
COL3A1P02461 Y_RNA.577-201ENST00000384794 101 ntBASIC3.32□□□□□ -1.88
COL3A1P02461 MT-TW-201ENST00000387382 68 ntBASIC3.32□□□□□ -1.88
COL3A1P02461 U3.29-201ENST00000391296 212 ntBASIC3.32□□□□□ -1.88
COL3A1P02461 RNU6-1156P-201ENST00000410365 100 ntBASIC3.32□□□□□ -1.88
COL3A1P02461 RPL31P2-201ENST00000413849 377 ntBASIC3.32□□□□□ -1.88
COL3A1P02461 MTATP6P29-201ENST00000415057 132 ntBASIC3.32□□□□□ -1.88
COL3A1P02461 TOMM20P4-201ENST00000427861 435 ntBASIC3.32□□□□□ -1.88
COL3A1P02461 AL591704.1-201ENST00000432574 275 ntBASIC3.32□□□□□ -1.88
COL3A1P02461 AP000926.1-201ENST00000479573 241 ntBASIC3.32□□□□□ -1.88
COL3A1P02461 RPL21P103-201ENST00000479921 488 ntBASIC3.32□□□□□ -1.88
COL3A1P02461 HMGB3P17-201ENST00000504195 649 ntBASIC3.32□□□□□ -1.88
COL3A1P02461 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC3.32□□□□□ -1.88
COL3A1P02461 AC092436.3-201ENST00000511788 257 ntBASIC3.32□□□□□ -1.88
COL3A1P02461 SNORA31.1-201ENST00000515993 133 ntBASIC3.32□□□□□ -1.88
COL3A1P02461 RNU6-27P-201ENST00000516146 107 ntBASIC3.32□□□□□ -1.88
COL3A1P02461 SNORA31.5-201ENST00000516190 133 ntBASIC3.32□□□□□ -1.88
COL3A1P02461 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC3.32□□□□□ -1.88
COL3A1P02461 AC040926.1-201ENST00000530195 238 ntBASIC3.32□□□□□ -1.88
COL3A1P02461 HSPE1P20-201ENST00000538133 289 ntBASIC3.32□□□□□ -1.88
COL3A1P02461 MIR5092-201ENST00000583139 88 ntBASIC3.32□□□□□ -1.88
COL3A1P02461 AL355812.1-201ENST00000603215 216 ntBASIC3.32□□□□□ -1.88
COL3A1P02461 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.32□□□□□ -1.88
COL3A1P02461 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.32□□□□□ -1.88
COL3A1P02461 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 114.6 ms