Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC2.83□□□□□ -1.96
HOXC11O43248 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.83□□□□□ -1.96
HOXC11O43248 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.83□□□□□ -1.96
HOXC11O43248 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.83□□□□□ -1.96
HOXC11O43248 AC023043.3-201ENST00000593113 385 ntBASIC2.83□□□□□ -1.96
HOXC11O43248 VN1R107P-201ENST00000601784 209 ntBASIC2.83□□□□□ -1.96
HOXC11O43248 AL670379.2-201ENST00000604983 252 ntBASIC2.83□□□□□ -1.96
HOXC11O43248 AC104458.1-201ENST00000608243 463 ntBASIC2.83□□□□□ -1.96
HOXC11O43248 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
HOXC11O43248 AC007014.2-201ENST00000615581 479 ntBASIC2.83□□□□□ -1.96
HOXC11O43248 AC131280.1-202ENST00000624067 4211 ntBASIC2.83□□□□□ -1.96
HOXC11O43248 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.83□□□□□ -1.96
HOXC11O43248 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.82□□□□□ -1.96
HOXC11O43248 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
HOXC11O43248 AC108206.1-201ENST00000570186 4159 ntBASIC2.82□□□□□ -1.96
HOXC11O43248 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
HOXC11O43248 RNU6-655P-201ENST00000362858 107 ntBASIC2.82□□□□□ -1.96
HOXC11O43248 SNORD113-7-201ENST00000363762 77 ntBASIC2.82□□□□□ -1.96
HOXC11O43248 SNORA38-201ENST00000363946 132 ntBASIC2.82□□□□□ -1.96
HOXC11O43248 SNORD73A-201ENST00000386062 65 ntBASIC2.82□□□□□ -1.96
HOXC11O43248 AL445529.1-201ENST00000398713 389 ntBASIC2.82□□□□□ -1.96
HOXC11O43248 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.82□□□□□ -1.96
HOXC11O43248 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC2.82□□□□□ -1.96
HOXC11O43248 USP9YP20-201ENST00000419224 558 ntBASIC2.82□□□□□ -1.96
HOXC11O43248 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC2.82□□□□□ -1.96
HOXC11O43248 NDUFA5P4-201ENST00000436704 385 ntBASIC2.82□□□□□ -1.96
HOXC11O43248 MTCO2P3-201ENST00000442543 421 ntBASIC2.82□□□□□ -1.96
HOXC11O43248 CYP2C59P-201ENST00000457790 269 ntBASIC2.82□□□□□ -1.96
HOXC11O43248 RNU6-1037P-201ENST00000459571 107 ntBASIC2.82□□□□□ -1.96
HOXC11O43248 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC2.82□□□□□ -1.96
HOXC11O43248 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2.82□□□□□ -1.96
HOXC11O43248 Y_RNA.665-201ENST00000516177 98 ntBASIC2.82□□□□□ -1.96
HOXC11O43248 MTND4LP26-201ENST00000518144 282 ntBASIC2.82□□□□□ -1.96
HOXC11O43248 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.82□□□□□ -1.96
HOXC11O43248 BNIP3P25-201ENST00000596023 559 ntBASIC2.82□□□□□ -1.96
HOXC11O43248 RPL30P11-203ENST00000598995 310 ntBASIC2.82□□□□□ -1.96
HOXC11O43248 AC146944.4-201ENST00000602697 718 ntBASIC2.82□□□□□ -1.96
HOXC11O43248 AP000907.4-201ENST00000604143 237 ntBASIC2.82□□□□□ -1.96
HOXC11O43248 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.82□□□□□ -1.96
HOXC11O43248 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
HOXC11O43248 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.82□□□□□ -1.96
HOXC11O43248 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.81□□□□□ -1.96
HOXC11O43248 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.81□□□□□ -1.96
HOXC11O43248 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
HOXC11O43248 MIR26A1-201ENST00000362205 77 ntBASIC2.81□□□□□ -1.96
HOXC11O43248 RNA5SP240-201ENST00000365355 128 ntBASIC2.81□□□□□ -1.96
HOXC11O43248 Y_RNA.530-201ENST00000384587 101 ntBASIC2.81□□□□□ -1.96
HOXC11O43248 MIR196B-201ENST00000384852 84 ntBASIC2.81□□□□□ -1.96
HOXC11O43248 RPS29P13-201ENST00000402041 169 ntBASIC2.81□□□□□ -1.96
HOXC11O43248 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.81□□□□□ -1.96
HOXC11O43248 ARL5AP4-201ENST00000430731 512 ntBASIC2.81□□□□□ -1.96
HOXC11O43248 MTATP6P13-201ENST00000438531 667 ntBASIC2.81□□□□□ -1.96
HOXC11O43248 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.81□□□□□ -1.96
HOXC11O43248 RNU7-26P-201ENST00000458980 63 ntBASIC2.81□□□□□ -1.96
HOXC11O43248 SNRPGP7-201ENST00000469016 106 ntBASIC2.81□□□□□ -1.96
HOXC11O43248 AC008628.2-201ENST00000502605 298 ntBASIC2.81□□□□□ -1.96
HOXC11O43248 AP003033.1-201ENST00000527244 415 ntBASIC2.81□□□□□ -1.96
HOXC11O43248 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC2.81□□□□□ -1.96
HOXC11O43248 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.81□□□□□ -1.96
HOXC11O43248 ZNF861P-201ENST00000588126 639 ntBASIC2.81□□□□□ -1.96
HOXC11O43248 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC2.81□□□□□ -1.96
HOXC11O43248 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
HOXC11O43248 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
HOXC11O43248 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC2.8□□□□□ -1.96
HOXC11O43248 RNU6-529P-201ENST00000363383 104 ntBASIC2.8□□□□□ -1.96
HOXC11O43248 Y_RNA.157-201ENST00000363638 102 ntBASIC2.8□□□□□ -1.96
HOXC11O43248 Y_RNA.167-201ENST00000363735 109 ntBASIC2.8□□□□□ -1.96
HOXC11O43248 AL590004.2-201ENST00000404787 371 ntBASIC2.8□□□□□ -1.96
HOXC11O43248 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC2.8□□□□□ -1.96
HOXC11O43248 ZNF885P-201ENST00000420174 1098 ntBASIC2.8□□□□□ -1.96
HOXC11O43248 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC2.8□□□□□ -1.96
HOXC11O43248 AC243964.1-201ENST00000441814 261 ntBASIC2.8□□□□□ -1.96
HOXC11O43248 AC003982.1-202ENST00000469928 248 ntBASIC2.8□□□□□ -1.96
HOXC11O43248 AC090096.1-201ENST00000489168 390 ntBASIC2.8□□□□□ -1.96
HOXC11O43248 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.8□□□□□ -1.96
HOXC11O43248 TRBVA-201ENST00000498804 316 ntBASIC2.8□□□□□ -1.96
HOXC11O43248 RNU6-1332P-201ENST00000516666 104 ntBASIC2.8□□□□□ -1.96
HOXC11O43248 AC104576.1-201ENST00000524225 88 ntBASIC2.8□□□□□ -1.96
HOXC11O43248 AC115990.1-201ENST00000526957 301 ntBASIC2.8□□□□□ -1.96
HOXC11O43248 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.8□□□□□ -1.96
HOXC11O43248 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC2.8□□□□□ -1.96
HOXC11O43248 SNORA59B-202ENST00000578183 701 ntBASIC2.8□□□□□ -1.96
HOXC11O43248 AC091135.1-201ENST00000585943 307 ntBASIC2.8□□□□□ -1.96
HOXC11O43248 AC002553.4-201ENST00000616896 331 ntBASIC2.8□□□□□ -1.96
HOXC11O43248 AC008121.3-201ENST00000618726 433 ntBASIC2.8□□□□□ -1.96
HOXC11O43248 AC100810.6-201ENST00000638068 285 ntBASIC2.8□□□□□ -1.96
HOXC11O43248 AC241585.2-209ENST00000638217 143 ntBASIC2.8□□□□□ -1.96
HOXC11O43248 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.79□□□□□ -1.96
HOXC11O43248 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.79□□□□□ -1.96
HOXC11O43248 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.79□□□□□ -1.96
HOXC11O43248 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
HOXC11O43248 RNU6-1210P-201ENST00000363775 107 ntBASIC2.79□□□□□ -1.96
HOXC11O43248 U3.13-201ENST00000364804 214 ntBASIC2.79□□□□□ -1.96
HOXC11O43248 SNORD88.1-201ENST00000408684 91 ntBASIC2.79□□□□□ -1.96
HOXC11O43248 AC008267.5-201ENST00000424928 265 ntBASIC2.79□□□□□ -1.96
HOXC11O43248 AC090515.1-201ENST00000465295 476 ntBASIC2.79□□□□□ -1.96
HOXC11O43248 AP005597.4-201ENST00000526762 229 ntBASIC2.79□□□□□ -1.96
HOXC11O43248 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.79□□□□□ -1.96
HOXC11O43248 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC2.79□□□□□ -1.96
HOXC11O43248 MIR5194-201ENST00000582634 120 ntBASIC2.79□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms