Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 Y_RNA.70-201ENST00000362886 110 ntBASIC2.52□□□□□ -2.01
UPF3AQ9H1J1 Y_RNA.245-201ENST00000364493 95 ntBASIC2.52□□□□□ -2.01
UPF3AQ9H1J1 MIR221-201ENST00000385135 110 ntBASIC2.52□□□□□ -2.01
UPF3AQ9H1J1 RNU6-373P-201ENST00000411247 98 ntBASIC2.52□□□□□ -2.01
UPF3AQ9H1J1 PDCL2P1-201ENST00000419302 352 ntBASIC2.52□□□□□ -2.01
UPF3AQ9H1J1 AL513185.2-201ENST00000425543 193 ntBASIC2.52□□□□□ -2.01
UPF3AQ9H1J1 AC092427.1-202ENST00000430569 476 ntBASIC2.52□□□□□ -2.01
UPF3AQ9H1J1 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.52□□□□□ -2.01
UPF3AQ9H1J1 USP9YP8-201ENST00000441913 500 ntBASIC2.52□□□□□ -2.01
UPF3AQ9H1J1 RPL12P25-201ENST00000455592 494 ntBASIC2.52□□□□□ -2.01
UPF3AQ9H1J1 PMCHL2-203ENST00000457791 237 ntBASIC2.52□□□□□ -2.01
UPF3AQ9H1J1 RNU6-1208P-201ENST00000459588 107 ntBASIC2.52□□□□□ -2.01
UPF3AQ9H1J1 DYNLL1P5-201ENST00000467158 270 ntBASIC2.52□□□□□ -2.01
UPF3AQ9H1J1 AC087884.1-201ENST00000469738 328 ntBASIC2.52□□□□□ -2.01
UPF3AQ9H1J1 AC083904.1-201ENST00000487828 231 ntBASIC2.52□□□□□ -2.01
UPF3AQ9H1J1 RPS27P27-201ENST00000498779 255 ntBASIC2.52□□□□□ -2.01
UPF3AQ9H1J1 AC114786.4-201ENST00000508771 728 ntBASIC2.52□□□□□ -2.01
UPF3AQ9H1J1 RNU6-1314P-201ENST00000517139 104 ntBASIC2.52□□□□□ -2.01
UPF3AQ9H1J1 AC090115.3-201ENST00000553218 849 ntBASIC2.52□□□□□ -2.01
UPF3AQ9H1J1 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC2.52□□□□□ -2.01
UPF3AQ9H1J1 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC2.52□□□□□ -2.01
UPF3AQ9H1J1 HSPE1P7-201ENST00000604681 321 ntBASIC2.52□□□□□ -2.01
UPF3AQ9H1J1 MIR6766-201ENST00000622641 72 ntBASIC2.52□□□□□ -2.01
UPF3AQ9H1J1 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC2.52□□□□□ -2.01
UPF3AQ9H1J1 AC110079.1-202ENST00000635213 138 ntBASIC2.52□□□□□ -2.01
UPF3AQ9H1J1 MIR219B-201ENST00000637023 88 ntBASIC2.52□□□□□ -2.01
UPF3AQ9H1J1 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
UPF3AQ9H1J1 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
UPF3AQ9H1J1 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
UPF3AQ9H1J1 MIR21-201ENST00000362134 72 ntBASIC2.51□□□□□ -2.01
UPF3AQ9H1J1 RNA5SP393-201ENST00000363423 117 ntBASIC2.51□□□□□ -2.01
UPF3AQ9H1J1 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
UPF3AQ9H1J1 Y_RNA.399-201ENST00000383955 105 ntBASIC2.51□□□□□ -2.01
UPF3AQ9H1J1 RNU6-217P-201ENST00000384164 104 ntBASIC2.51□□□□□ -2.01
UPF3AQ9H1J1 RPL21P90-201ENST00000415692 466 ntBASIC2.51□□□□□ -2.01
UPF3AQ9H1J1 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC2.51□□□□□ -2.01
UPF3AQ9H1J1 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.51□□□□□ -2.01
UPF3AQ9H1J1 GPM6BP2-201ENST00000432046 144 ntBASIC2.51□□□□□ -2.01
UPF3AQ9H1J1 AL512844.2-201ENST00000433990 593 ntBASIC2.51□□□□□ -2.01
UPF3AQ9H1J1 GPM6BP1-201ENST00000446387 144 ntBASIC2.51□□□□□ -2.01
UPF3AQ9H1J1 MTND5P20-201ENST00000448677 143 ntBASIC2.51□□□□□ -2.01
UPF3AQ9H1J1 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC2.51□□□□□ -2.01
UPF3AQ9H1J1 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC2.51□□□□□ -2.01
UPF3AQ9H1J1 AC008628.2-201ENST00000502605 298 ntBASIC2.51□□□□□ -2.01
UPF3AQ9H1J1 AC091885.1-201ENST00000506658 268 ntBASIC2.51□□□□□ -2.01
UPF3AQ9H1J1 MTND3P25-201ENST00000509243 135 ntBASIC2.51□□□□□ -2.01
UPF3AQ9H1J1 FAM206BP-201ENST00000510179 541 ntBASIC2.51□□□□□ -2.01
UPF3AQ9H1J1 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.51□□□□□ -2.01
UPF3AQ9H1J1 AC025465.4-201ENST00000513422 638 ntBASIC2.51□□□□□ -2.01
UPF3AQ9H1J1 RNU1-86P-201ENST00000516108 154 ntBASIC2.51□□□□□ -2.01
UPF3AQ9H1J1 RNU1-107P-201ENST00000516617 154 ntBASIC2.51□□□□□ -2.01
UPF3AQ9H1J1 RNA5SP165-201ENST00000517142 115 ntBASIC2.51□□□□□ -2.01
UPF3AQ9H1J1 SCOCP1-201ENST00000554676 349 ntBASIC2.51□□□□□ -2.01
UPF3AQ9H1J1 AL157871.3-201ENST00000557231 293 ntBASIC2.51□□□□□ -2.01
UPF3AQ9H1J1 MIR1273C-201ENST00000578669 77 ntBASIC2.51□□□□□ -2.01
UPF3AQ9H1J1 AC103810.1-201ENST00000579873 453 ntBASIC2.51□□□□□ -2.01
UPF3AQ9H1J1 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.51□□□□□ -2.01
UPF3AQ9H1J1 AC004805.2-201ENST00000605382 482 ntBASIC2.51□□□□□ -2.01
UPF3AQ9H1J1 AC104237.2-201ENST00000612456 443 ntBASIC2.51□□□□□ -2.01
UPF3AQ9H1J1 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC2.51□□□□□ -2.01
UPF3AQ9H1J1 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 ZNF519P1-201ENST00000449011 1626 ntBASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 RNU6-45P-201ENST00000384471 107 ntBASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 RNU6-393P-201ENST00000384475 107 ntBASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 RNU6-831P-201ENST00000384548 107 ntBASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 RNU6-140P-201ENST00000384566 108 ntBASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 RNU2-3P-201ENST00000410144 191 ntBASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 POLHP1-201ENST00000411806 470 ntBASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 CYCSP33-201ENST00000414485 327 ntBASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 RPL7P37-201ENST00000425095 738 ntBASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 AL590383.1-201ENST00000428602 75 ntBASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 MTND3P10-201ENST00000450967 341 ntBASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 Y_RNA.654-201ENST00000497848 106 ntBASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 RNU6-875P-201ENST00000516488 106 ntBASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 Y_RNA.702-201ENST00000516843 96 ntBASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 RNU6-928P-201ENST00000516876 104 ntBASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 BTF3P12-201ENST00000519620 469 ntBASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 PSMA3P-201ENST00000555485 635 ntBASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 AMZ2P1-203ENST00000565833 850 ntBASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 VN1R80P-201ENST00000597126 338 ntBASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 AC009318.2-201ENST00000610917 651 ntBASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 AC103705.1-201ENST00000619013 241 ntBASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 AC009248.2-201ENST00000619826 254 ntBASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 AC022418.1-201ENST00000624118 445 ntBASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 U2.21-201ENST00000637295 81 ntBASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.5□□□□□ -2.01
UPF3AQ9H1J1 AC121333.1-201ENST00000567488 2709 ntBASIC2.5□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms