Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 SNORA75.4-201ENST00000391278 119 ntBASIC3.45□□□□□ -1.86
VPS53Q5VIR6 RNU6-1304P-201ENST00000411374 106 ntBASIC3.45□□□□□ -1.86
VPS53Q5VIR6 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC3.45□□□□□ -1.86
VPS53Q5VIR6 AL592148.1-201ENST00000413568 445 ntBASIC3.45□□□□□ -1.86
VPS53Q5VIR6 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC3.45□□□□□ -1.86
VPS53Q5VIR6 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC3.45□□□□□ -1.86
VPS53Q5VIR6 Z82205.1-201ENST00000428456 297 ntBASIC3.45□□□□□ -1.86
VPS53Q5VIR6 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC3.45□□□□□ -1.86
VPS53Q5VIR6 AL135938.1-201ENST00000443141 297 ntBASIC3.45□□□□□ -1.86
VPS53Q5VIR6 CECR9-201ENST00000453421 199 ntBASIC3.45□□□□□ -1.86
VPS53Q5VIR6 RPL12P25-201ENST00000455592 494 ntBASIC3.45□□□□□ -1.86
VPS53Q5VIR6 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC3.45□□□□□ -1.86
VPS53Q5VIR6 Y_RNA.708-201ENST00000516950 96 ntBASIC3.45□□□□□ -1.86
VPS53Q5VIR6 AC009902.1-201ENST00000519351 183 ntBASIC3.45□□□□□ -1.86
VPS53Q5VIR6 ELOCP31-201ENST00000540463 467 ntBASIC3.45□□□□□ -1.86
VPS53Q5VIR6 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.45□□□□□ -1.86
VPS53Q5VIR6 MTCO3P13-201ENST00000577757 781 ntBASIC3.45□□□□□ -1.86
VPS53Q5VIR6 OR1M4P-201ENST00000589199 287 ntBASIC3.45□□□□□ -1.86
VPS53Q5VIR6 AC244517.12-201ENST00000623581 663 ntBASIC3.45□□□□□ -1.86
VPS53Q5VIR6 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.45□□□□□ -1.86
VPS53Q5VIR6 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.45□□□□□ -1.86
VPS53Q5VIR6 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.44□□□□□ -1.86
VPS53Q5VIR6 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.44□□□□□ -1.86
VPS53Q5VIR6 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
VPS53Q5VIR6 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
VPS53Q5VIR6 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.44□□□□□ -1.86
VPS53Q5VIR6 Y_RNA.445-201ENST00000384168 102 ntBASIC3.44□□□□□ -1.86
VPS53Q5VIR6 RNU6-310P-201ENST00000384655 107 ntBASIC3.44□□□□□ -1.86
VPS53Q5VIR6 AC096664.2-201ENST00000411843 406 ntBASIC3.44□□□□□ -1.86
VPS53Q5VIR6 BMS1P22-201ENST00000414726 313 ntBASIC3.44□□□□□ -1.86
VPS53Q5VIR6 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.44□□□□□ -1.86
VPS53Q5VIR6 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.44□□□□□ -1.86
VPS53Q5VIR6 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC3.44□□□□□ -1.86
VPS53Q5VIR6 AL365496.1-201ENST00000426885 215 ntBASIC3.44□□□□□ -1.86
VPS53Q5VIR6 MTCO3P10-201ENST00000455912 772 ntBASIC3.44□□□□□ -1.86
VPS53Q5VIR6 RPL30P15-201ENST00000457129 321 ntBASIC3.44□□□□□ -1.86
VPS53Q5VIR6 RPL26P9-201ENST00000457466 433 ntBASIC3.44□□□□□ -1.86
VPS53Q5VIR6 AC090096.1-201ENST00000489168 390 ntBASIC3.44□□□□□ -1.86
VPS53Q5VIR6 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC3.44□□□□□ -1.86
VPS53Q5VIR6 Y_RNA.711-201ENST00000516993 102 ntBASIC3.44□□□□□ -1.86
VPS53Q5VIR6 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC3.44□□□□□ -1.86
VPS53Q5VIR6 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3.44□□□□□ -1.86
VPS53Q5VIR6 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC3.44□□□□□ -1.86
VPS53Q5VIR6 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.44□□□□□ -1.86
VPS53Q5VIR6 ELOCP5-201ENST00000604924 333 ntBASIC3.44□□□□□ -1.86
VPS53Q5VIR6 AC007938.3-201ENST00000604965 623 ntBASIC3.44□□□□□ -1.86
VPS53Q5VIR6 AC018462.2-201ENST00000605375 395 ntBASIC3.44□□□□□ -1.86
VPS53Q5VIR6 AC004805.2-201ENST00000605382 482 ntBASIC3.44□□□□□ -1.86
VPS53Q5VIR6 AP000654.2-201ENST00000605633 586 ntBASIC3.44□□□□□ -1.86
VPS53Q5VIR6 AL161423.1-201ENST00000613700 262 ntBASIC3.44□□□□□ -1.86
VPS53Q5VIR6 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC3.44□□□□□ -1.86
VPS53Q5VIR6 AC110079.1-202ENST00000635213 138 ntBASIC3.44□□□□□ -1.86
VPS53Q5VIR6 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
VPS53Q5VIR6 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.44□□□□□ -1.86
VPS53Q5VIR6 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
VPS53Q5VIR6 Y_RNA.132-201ENST00000363421 102 ntBASIC3.43□□□□□ -1.86
VPS53Q5VIR6 RNU6-884P-201ENST00000363889 107 ntBASIC3.43□□□□□ -1.86
VPS53Q5VIR6 Y_RNA.202-201ENST00000364083 110 ntBASIC3.43□□□□□ -1.86
VPS53Q5VIR6 SNORD14B-201ENST00000364533 90 ntBASIC3.43□□□□□ -1.86
VPS53Q5VIR6 RNU6-384P-201ENST00000364900 104 ntBASIC3.43□□□□□ -1.86
VPS53Q5VIR6 SNORA9.2-201ENST00000365361 133 ntBASIC3.43□□□□□ -1.86
VPS53Q5VIR6 Y_RNA.422-201ENST00000384054 114 ntBASIC3.43□□□□□ -1.86
VPS53Q5VIR6 MIR767-201ENST00000390228 109 ntBASIC3.43□□□□□ -1.86
VPS53Q5VIR6 SNORA40C-201ENST00000391285 128 ntBASIC3.43□□□□□ -1.86
VPS53Q5VIR6 RNU6-1050P-201ENST00000410388 107 ntBASIC3.43□□□□□ -1.86
VPS53Q5VIR6 RNU2-68P-201ENST00000410878 191 ntBASIC3.43□□□□□ -1.86
VPS53Q5VIR6 Y_RNA.646-201ENST00000410980 101 ntBASIC3.43□□□□□ -1.86
VPS53Q5VIR6 AL627311.1-201ENST00000431514 115 ntBASIC3.43□□□□□ -1.86
VPS53Q5VIR6 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC3.43□□□□□ -1.86
VPS53Q5VIR6 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.43□□□□□ -1.86
VPS53Q5VIR6 SNORD5.1-201ENST00000458800 75 ntBASIC3.43□□□□□ -1.86
VPS53Q5VIR6 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.43□□□□□ -1.86
VPS53Q5VIR6 AC097473.1-201ENST00000508142 408 ntBASIC3.43□□□□□ -1.86
VPS53Q5VIR6 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC3.43□□□□□ -1.86
VPS53Q5VIR6 RAC1P5-201ENST00000512182 576 ntBASIC3.43□□□□□ -1.86
VPS53Q5VIR6 RNA5SP165-201ENST00000517142 115 ntBASIC3.43□□□□□ -1.86
VPS53Q5VIR6 AC022634.1-201ENST00000520765 532 ntBASIC3.43□□□□□ -1.86
VPS53Q5VIR6 AC079600.2-201ENST00000550076 130 ntBASIC3.43□□□□□ -1.86
VPS53Q5VIR6 EIF4BP1-201ENST00000554881 351 ntBASIC3.43□□□□□ -1.86
VPS53Q5VIR6 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC3.43□□□□□ -1.86
VPS53Q5VIR6 AL645944.1-201ENST00000603857 493 ntBASIC3.43□□□□□ -1.86
VPS53Q5VIR6 AP000787.2-201ENST00000604432 568 ntBASIC3.43□□□□□ -1.86
VPS53Q5VIR6 AC093732.2-201ENST00000607950 274 ntBASIC3.43□□□□□ -1.86
VPS53Q5VIR6 PISRT1.1-201ENST00000616930 107 ntBASIC3.43□□□□□ -1.86
VPS53Q5VIR6 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC3.43□□□□□ -1.86
VPS53Q5VIR6 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC3.43□□□□□ -1.86
VPS53Q5VIR6 AL137790.1-201ENST00000634283 177 ntBASIC3.43□□□□□ -1.86
VPS53Q5VIR6 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
VPS53Q5VIR6 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC3.42□□□□□ -1.86
VPS53Q5VIR6 Y_RNA.112-201ENST00000363250 102 ntBASIC3.42□□□□□ -1.86
VPS53Q5VIR6 Y_RNA.594-201ENST00000410373 140 ntBASIC3.42□□□□□ -1.86
VPS53Q5VIR6 Y_RNA.623-201ENST00000411128 95 ntBASIC3.42□□□□□ -1.86
VPS53Q5VIR6 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC3.42□□□□□ -1.86
VPS53Q5VIR6 AL096701.2-201ENST00000416920 238 ntBASIC3.42□□□□□ -1.86
VPS53Q5VIR6 HMGN2P30-201ENST00000423237 256 ntBASIC3.42□□□□□ -1.86
VPS53Q5VIR6 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.42□□□□□ -1.86
VPS53Q5VIR6 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.42□□□□□ -1.86
VPS53Q5VIR6 RNU4ATAC7P-201ENST00000516280 125 ntBASIC3.42□□□□□ -1.86
VPS53Q5VIR6 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.42□□□□□ -1.86
VPS53Q5VIR6 AC025755.1-201ENST00000521306 278 ntBASIC3.42□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms