Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC0.04□□□□□ -2.4
HSPG2P98160 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC0.04□□□□□ -2.4
HSPG2P98160 BET1P1-201ENST00000482276 359 ntBASIC0.04□□□□□ -2.4
HSPG2P98160 AC018868.1-201ENST00000491307 315 ntBASIC0.04□□□□□ -2.4
HSPG2P98160 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC0.04□□□□□ -2.4
HSPG2P98160 AC113420.1-201ENST00000507903 571 ntBASIC0.04□□□□□ -2.4
HSPG2P98160 5S_rRNA.3-201ENST00000517021 110 ntBASIC0.04□□□□□ -2.4
HSPG2P98160 CYCSP27-201ENST00000527643 293 ntBASIC0.04□□□□□ -2.4
HSPG2P98160 AC025588.3-201ENST00000604182 274 ntBASIC0.04□□□□□ -2.4
HSPG2P98160 AC090578.1-201ENST00000604955 591 ntBASIC0.04□□□□□ -2.4
HSPG2P98160 5S_rRNA.19-201ENST00000612131 110 ntBASIC0.04□□□□□ -2.4
HSPG2P98160 AC006213.4-201ENST00000616184 634 ntBASIC0.04□□□□□ -2.4
HSPG2P98160 AC009318.4-201ENST00000620496 486 ntBASIC0.04□□□□□ -2.4
HSPG2P98160 5S_rRNA.18-201ENST00000621941 110 ntBASIC0.04□□□□□ -2.4
HSPG2P98160 AC093648.1-201ENST00000623546 606 ntBASIC0.04□□□□□ -2.4
HSPG2P98160 AC138627.2-201ENST00000624202 601 ntBASIC0.04□□□□□ -2.4
HSPG2P98160 Y_RNA.124-201ENST00000363339 93 ntBASIC0.03□□□□□ -2.4
HSPG2P98160 SNORA48.1-201ENST00000390879 135 ntBASIC0.03□□□□□ -2.4
HSPG2P98160 AC244098.3-201ENST00000424803 96 ntBASIC0.03□□□□□ -2.4
HSPG2P98160 AC004865.1-201ENST00000442276 1003 ntBASIC0.03□□□□□ -2.4
HSPG2P98160 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC0.03□□□□□ -2.4
HSPG2P98160 RNA5SP134-201ENST00000516492 96 ntBASIC0.03□□□□□ -2.4
HSPG2P98160 AC109329.1-201ENST00000518744 317 ntBASIC0.03□□□□□ -2.4
HSPG2P98160 RSL24D1P11-201ENST00000591045 491 ntBASIC0.03□□□□□ -2.4
HSPG2P98160 AC068790.6-201ENST00000602558 258 ntBASIC0.03□□□□□ -2.4
HSPG2P98160 KATNBL1P5-201ENST00000605015 517 ntBASIC0.03□□□□□ -2.4
HSPG2P98160 FAS-AS1.2-201ENST00000620386 170 ntBASIC0.03□□□□□ -2.4
HSPG2P98160 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC0.03□□□□□ -2.4
HSPG2P98160 Y_RNA.288-201ENST00000364854 92 ntBASIC0.03□□□□□ -2.4
HSPG2P98160 AL591034.2-201ENST00000402839 359 ntBASIC0.03□□□□□ -2.4
HSPG2P98160 PPP1R11P2-201ENST00000423543 382 ntBASIC0.03□□□□□ -2.4
HSPG2P98160 AL589872.1-201ENST00000426602 288 ntBASIC0.03□□□□□ -2.4
HSPG2P98160 AC074198.2-201ENST00000508153 258 ntBASIC0.03□□□□□ -2.4
HSPG2P98160 RNA5SP291-201ENST00000517222 105 ntBASIC0.03□□□□□ -2.4
HSPG2P98160 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC0.03□□□□□ -2.4
HSPG2P98160 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC0.03□□□□□ -2.4
HSPG2P98160 MIR3167-201ENST00000579623 85 ntBASIC0.03□□□□□ -2.4
HSPG2P98160 AC107304.1-201ENST00000604229 296 ntBASIC0.03□□□□□ -2.4
HSPG2P98160 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC0.03□□□□□ -2.4
HSPG2P98160 AL138713.1-201ENST00000624026 2130 ntBASIC0.03□□□□□ -2.4
HSPG2P98160 C1GALT1-202ENST00000402468 930 ntTSL 1 (best) BASIC0.03□□□□□ -2.4
HSPG2P98160 RNU6-1054P-201ENST00000411293 104 ntBASIC0.03□□□□□ -2.4
HSPG2P98160 RPP40P1-201ENST00000426762 456 ntBASIC0.03□□□□□ -2.4
HSPG2P98160 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC0.03□□□□□ -2.4
HSPG2P98160 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC0.03□□□□□ -2.4
HSPG2P98160 snoU13.21-201ENST00000459368 105 ntBASIC0.03□□□□□ -2.4
HSPG2P98160 AC010631.1-201ENST00000474150 156 ntBASIC0.03□□□□□ -2.4
HSPG2P98160 RPL30P7-201ENST00000479312 323 ntBASIC0.03□□□□□ -2.4
HSPG2P98160 MTATP6P9-201ENST00000515039 680 ntBASIC0.03□□□□□ -2.4
HSPG2P98160 RN7SKP88-201ENST00000516847 250 ntBASIC0.03□□□□□ -2.4
HSPG2P98160 AC112220.3-201ENST00000605502 502 ntBASIC0.03□□□□□ -2.4
HSPG2P98160 7SK.8-201ENST00000612110 250 ntBASIC0.03□□□□□ -2.4
HSPG2P98160 7SK.11-201ENST00000615477 250 ntBASIC0.03□□□□□ -2.4
HSPG2P98160 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.03□□□□□ -2.4
HSPG2P98160 7SK.13-201ENST00000622040 250 ntBASIC0.03□□□□□ -2.4
HSPG2P98160 AC092447.10-201ENST00000620607 1652 ntBASIC0.03□□□□□ -2.4
HSPG2P98160 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC0.03□□□□□ -2.41
HSPG2P98160 Y_RNA.99-201ENST00000363138 105 ntBASIC0.03□□□□□ -2.41
HSPG2P98160 RNU6-444P-201ENST00000383988 108 ntBASIC0.03□□□□□ -2.41
HSPG2P98160 Y_RNA.447-201ENST00000384184 113 ntBASIC0.03□□□□□ -2.41
HSPG2P98160 RNU6-439P-201ENST00000384188 106 ntBASIC0.03□□□□□ -2.41
HSPG2P98160 RNU1-119P-201ENST00000391122 165 ntBASIC0.03□□□□□ -2.41
HSPG2P98160 RNU2-15P-201ENST00000410692 191 ntBASIC0.03□□□□□ -2.41
HSPG2P98160 USP9YP19-201ENST00000412165 485 ntBASIC0.03□□□□□ -2.41
HSPG2P98160 USP9YP13-201ENST00000417797 480 ntBASIC0.03□□□□□ -2.41
HSPG2P98160 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC0.03□□□□□ -2.41
HSPG2P98160 AC092423.1-201ENST00000430165 186 ntBASIC0.03□□□□□ -2.41
HSPG2P98160 CETN4P-201ENST00000432407 469 ntBASIC0.03□□□□□ -2.41
HSPG2P98160 RPL26P6-201ENST00000440913 438 ntBASIC0.03□□□□□ -2.41
HSPG2P98160 MTCO2P25-201ENST00000447065 681 ntBASIC0.03□□□□□ -2.41
HSPG2P98160 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC0.03□□□□□ -2.41
HSPG2P98160 AC015724.1-201ENST00000478577 156 ntBASIC0.03□□□□□ -2.41
HSPG2P98160 LARP1BP2-201ENST00000486594 519 ntBASIC0.03□□□□□ -2.41
HSPG2P98160 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC0.03□□□□□ -2.41
HSPG2P98160 AL160314.1-201ENST00000490836 438 ntBASIC0.03□□□□□ -2.41
HSPG2P98160 AC025459.1-201ENST00000504072 156 ntBASIC0.03□□□□□ -2.41
HSPG2P98160 RNU6-138P-201ENST00000515952 107 ntBASIC0.03□□□□□ -2.41
HSPG2P98160 SNORA31.4-201ENST00000516049 129 ntBASIC0.03□□□□□ -2.41
HSPG2P98160 RNU6-1256P-201ENST00000516539 103 ntBASIC0.03□□□□□ -2.41
HSPG2P98160 RNA5SP168-201ENST00000516642 112 ntBASIC0.03□□□□□ -2.41
HSPG2P98160 MRPS36P5-201ENST00000551909 298 ntBASIC0.03□□□□□ -2.41
HSPG2P98160 EIF1P4-201ENST00000572664 335 ntBASIC0.03□□□□□ -2.41
HSPG2P98160 ROCK1P1-201ENST00000573767 549 ntBASIC0.03□□□□□ -2.41
HSPG2P98160 AC015688.6-201ENST00000577737 104 ntBASIC0.03□□□□□ -2.41
HSPG2P98160 MIR3937-201ENST00000580135 106 ntBASIC0.03□□□□□ -2.41
HSPG2P98160 GHRLOS.1-201ENST00000610995 70 ntBASIC0.03□□□□□ -2.41
HSPG2P98160 AL158163.2-201ENST00000619110 700 ntBASIC0.03□□□□□ -2.41
HSPG2P98160 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC0.03□□□□□ -2.41
HSPG2P98160 AC009033.1-201ENST00000624279 431 ntBASIC0.03□□□□□ -2.41
HSPG2P98160 RNA5SP327-201ENST00000362494 101 ntBASIC0.02□□□□□ -2.41
HSPG2P98160 RNU2-33P-201ENST00000410344 192 ntBASIC0.02□□□□□ -2.41
HSPG2P98160 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC0.02□□□□□ -2.41
HSPG2P98160 RNU7-90P-201ENST00000459216 62 ntBASIC0.02□□□□□ -2.41
HSPG2P98160 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC0.02□□□□□ -2.41
HSPG2P98160 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC0.02□□□□□ -2.41
HSPG2P98160 RNU4-18P-201ENST00000516751 149 ntBASIC0.02□□□□□ -2.41
HSPG2P98160 SCARNA16.5-201ENST00000517114 183 ntBASIC0.02□□□□□ -2.41
HSPG2P98160 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.02□□□□□ -2.41
HSPG2P98160 AF129408.1-201ENST00000608767 431 ntBASIC0.02□□□□□ -2.41
HSPG2P98160 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC0.02□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms