Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
HOXC9P31274 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.86□□□□□ -1.95
HOXC9P31274 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.86□□□□□ -1.95
HOXC9P31274 U8.13-201ENST00000390842 128 ntBASIC2.85□□□□□ -1.95
HOXC9P31274 RNU6-482P-201ENST00000391068 107 ntBASIC2.85□□□□□ -1.95
HOXC9P31274 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.85□□□□□ -1.95
HOXC9P31274 RNU2-3P-201ENST00000410144 191 ntBASIC2.85□□□□□ -1.95
HOXC9P31274 RNU6-607P-201ENST00000411283 108 ntBASIC2.85□□□□□ -1.95
HOXC9P31274 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC2.85□□□□□ -1.95
HOXC9P31274 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC2.85□□□□□ -1.95
HOXC9P31274 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC2.85□□□□□ -1.95
HOXC9P31274 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC2.85□□□□□ -1.95
HOXC9P31274 RNU6-1208P-201ENST00000459588 107 ntBASIC2.85□□□□□ -1.95
HOXC9P31274 RPS26P21-201ENST00000475397 348 ntBASIC2.85□□□□□ -1.95
HOXC9P31274 RPS27AP9-201ENST00000477681 438 ntBASIC2.85□□□□□ -1.95
HOXC9P31274 RPS29P25-201ENST00000481709 171 ntBASIC2.85□□□□□ -1.95
HOXC9P31274 AC083904.1-201ENST00000487828 231 ntBASIC2.85□□□□□ -1.95
HOXC9P31274 Y_RNA.654-201ENST00000497848 106 ntBASIC2.85□□□□□ -1.95
HOXC9P31274 AC091885.1-201ENST00000506658 268 ntBASIC2.85□□□□□ -1.95
HOXC9P31274 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.85□□□□□ -1.95
HOXC9P31274 RNU6-189P-201ENST00000516120 101 ntBASIC2.85□□□□□ -1.95
HOXC9P31274 RNU6-581P-201ENST00000516214 105 ntBASIC2.85□□□□□ -1.95
HOXC9P31274 AC022634.1-201ENST00000520765 532 ntBASIC2.85□□□□□ -1.95
HOXC9P31274 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC2.85□□□□□ -1.95
HOXC9P31274 OR11H5P-201ENST00000554039 926 ntBASIC2.85□□□□□ -1.95
HOXC9P31274 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.85□□□□□ -1.95
HOXC9P31274 MTCO3P13-201ENST00000577757 781 ntBASIC2.85□□□□□ -1.95
HOXC9P31274 LRRC37A5P-203ENST00000580181 585 ntBASIC2.85□□□□□ -1.95
HOXC9P31274 MIR4506-201ENST00000584693 77 ntBASIC2.85□□□□□ -1.95
HOXC9P31274 MIR3199-2-201ENST00000636243 86 ntBASIC2.85□□□□□ -1.95
HOXC9P31274 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
HOXC9P31274 SNORA25.6-201ENST00000364121 118 ntBASIC2.84□□□□□ -1.95
HOXC9P31274 RNU6-266P-201ENST00000364225 107 ntBASIC2.84□□□□□ -1.95
HOXC9P31274 Y_RNA.399-201ENST00000383955 105 ntBASIC2.84□□□□□ -1.95
HOXC9P31274 RNU6-373P-201ENST00000411247 98 ntBASIC2.84□□□□□ -1.95
HOXC9P31274 RPL30P16-201ENST00000419341 429 ntBASIC2.84□□□□□ -1.95
HOXC9P31274 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC2.84□□□□□ -1.95
HOXC9P31274 SAR1AP4-201ENST00000429225 591 ntBASIC2.84□□□□□ -1.95
HOXC9P31274 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.84□□□□□ -1.95
HOXC9P31274 HMGB1P31-201ENST00000437242 427 ntBASIC2.84□□□□□ -1.95
HOXC9P31274 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.84□□□□□ -1.95
HOXC9P31274 AC098831.1-201ENST00000440661 216 ntBASIC2.84□□□□□ -1.95
HOXC9P31274 RBMX2P4-201ENST00000441256 376 ntBASIC2.84□□□□□ -1.95
HOXC9P31274 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.84□□□□□ -1.95
HOXC9P31274 AC092001.1-201ENST00000453012 261 ntBASIC2.84□□□□□ -1.95
HOXC9P31274 HMGN2P26-201ENST00000463169 339 ntBASIC2.84□□□□□ -1.95
HOXC9P31274 AC011005.2-201ENST00000487324 359 ntBASIC2.84□□□□□ -1.95
HOXC9P31274 RPS27P26-201ENST00000494583 239 ntBASIC2.84□□□□□ -1.95
HOXC9P31274 SNORA31.26-201ENST00000517250 137 ntBASIC2.84□□□□□ -1.95
HOXC9P31274 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC2.84□□□□□ -1.95
HOXC9P31274 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.84□□□□□ -1.95
HOXC9P31274 AP000763.2-201ENST00000540641 163 ntBASIC2.84□□□□□ -1.95
HOXC9P31274 AL121821.2-201ENST00000556081 394 ntBASIC2.84□□□□□ -1.95
HOXC9P31274 AC021739.1-201ENST00000559631 174 ntBASIC2.84□□□□□ -1.95
HOXC9P31274 LINC00933-203ENST00000559812 219 ntBASIC2.84□□□□□ -1.95
HOXC9P31274 AC020895.1-201ENST00000595362 272 ntBASIC2.84□□□□□ -1.95
HOXC9P31274 AL355877.2-201ENST00000603670 358 ntBASIC2.84□□□□□ -1.95
HOXC9P31274 AC090617.7-201ENST00000623952 126 ntBASIC2.84□□□□□ -1.95
HOXC9P31274 AC090617.10-201ENST00000624308 134 ntBASIC2.84□□□□□ -1.95
HOXC9P31274 AC099654.7-201ENST00000635788 2127 ntBASIC2.84□□□□□ -1.96
HOXC9P31274 AP006437.1-201ENST00000641440 3685 ntBASIC2.84□□□□□ -1.96
HOXC9P31274 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
HOXC9P31274 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
HOXC9P31274 RNU6-522P-201ENST00000364497 107 ntBASIC2.83□□□□□ -1.96
HOXC9P31274 Y_RNA.324-201ENST00000365165 102 ntBASIC2.83□□□□□ -1.96
HOXC9P31274 RNU6-1283P-201ENST00000365314 105 ntBASIC2.83□□□□□ -1.96
HOXC9P31274 DEFA7P-201ENST00000382676 285 ntBASIC2.83□□□□□ -1.96
HOXC9P31274 SNORA48.3-201ENST00000391081 134 ntBASIC2.83□□□□□ -1.96
HOXC9P31274 RNA5SP354-201ENST00000391247 136 ntBASIC2.83□□□□□ -1.96
HOXC9P31274 ARL5AP1-201ENST00000418991 388 ntBASIC2.83□□□□□ -1.96
HOXC9P31274 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.83□□□□□ -1.96
HOXC9P31274 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.83□□□□□ -1.96
HOXC9P31274 HMGN2P10-201ENST00000448085 265 ntBASIC2.83□□□□□ -1.96
HOXC9P31274 NDUFB1P2-201ENST00000449477 176 ntBASIC2.83□□□□□ -1.96
HOXC9P31274 RPL31P58-201ENST00000469001 379 ntBASIC2.83□□□□□ -1.96
HOXC9P31274 AC087884.1-201ENST00000469738 328 ntBASIC2.83□□□□□ -1.96
HOXC9P31274 Y_RNA.665-201ENST00000516177 98 ntBASIC2.83□□□□□ -1.96
HOXC9P31274 AC090115.3-201ENST00000553218 849 ntBASIC2.83□□□□□ -1.96
HOXC9P31274 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC2.83□□□□□ -1.96
HOXC9P31274 RPL23AP78-201ENST00000599928 470 ntBASIC2.83□□□□□ -1.96
HOXC9P31274 AC011890.2-201ENST00000613393 294 ntBASIC2.83□□□□□ -1.96
HOXC9P31274 RMST_4.1-201ENST00000616886 107 ntBASIC2.83□□□□□ -1.96
HOXC9P31274 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.83□□□□□ -1.96
HOXC9P31274 AC002064.3-201ENST00000623448 346 ntBASIC2.83□□□□□ -1.96
HOXC9P31274 AC110079.1-202ENST00000635213 138 ntBASIC2.83□□□□□ -1.96
HOXC9P31274 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
HOXC9P31274 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC2.82□□□□□ -1.96
HOXC9P31274 ZNF355P-201ENST00000427301 3216 ntBASIC2.82□□□□□ -1.96
HOXC9P31274 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.82□□□□□ -1.96
HOXC9P31274 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.82□□□□□ -1.96
HOXC9P31274 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC2.82□□□□□ -1.96
HOXC9P31274 Y_RNA.86-201ENST00000363020 111 ntBASIC2.82□□□□□ -1.96
HOXC9P31274 RNU1-105P-201ENST00000363470 161 ntBASIC2.82□□□□□ -1.96
HOXC9P31274 RNU6-82P-201ENST00000363970 107 ntBASIC2.82□□□□□ -1.96
HOXC9P31274 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC2.82□□□□□ -1.96
HOXC9P31274 RNU6-876P-201ENST00000391295 104 ntBASIC2.82□□□□□ -1.96
HOXC9P31274 AL139156.1-201ENST00000412785 841 ntBASIC2.82□□□□□ -1.96
HOXC9P31274 AL365496.1-201ENST00000426885 215 ntBASIC2.82□□□□□ -1.96
HOXC9P31274 AC009414.1-201ENST00000427200 443 ntBASIC2.82□□□□□ -1.96
HOXC9P31274 SRIP2-201ENST00000428470 166 ntBASIC2.82□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms