Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AL136310.1-201ENST00000404926 654 ntBASIC0.92□□□□□ -2.26
HLA-DMBP28068 Y_RNA.597-201ENST00000410463 100 ntBASIC0.92□□□□□ -2.26
HLA-DMBP28068 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC0.92□□□□□ -2.26
HLA-DMBP28068 MTCYBP5-201ENST00000423752 1135 ntBASIC0.92□□□□□ -2.26
HLA-DMBP28068 AC079448.1-201ENST00000449377 373 ntBASIC0.92□□□□□ -2.26
HLA-DMBP28068 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC0.92□□□□□ -2.26
HLA-DMBP28068 snoU109.2-201ENST00000459316 135 ntBASIC0.92□□□□□ -2.26
HLA-DMBP28068 TOMM22P6-201ENST00000465035 409 ntBASIC0.92□□□□□ -2.26
HLA-DMBP28068 RPS26P55-201ENST00000471178 356 ntBASIC0.92□□□□□ -2.26
HLA-DMBP28068 AC010587.2-201ENST00000511727 448 ntBASIC0.92□□□□□ -2.26
HLA-DMBP28068 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC0.92□□□□□ -2.26
HLA-DMBP28068 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC0.92□□□□□ -2.26
HLA-DMBP28068 AC022022.2-201ENST00000602989 360 ntBASIC0.92□□□□□ -2.26
HLA-DMBP28068 AC144521.1-201ENST00000607148 956 ntBASIC0.92□□□□□ -2.26
HLA-DMBP28068 AC091965.4-201ENST00000607691 587 ntBASIC0.92□□□□□ -2.26
HLA-DMBP28068 AC007792.1-201ENST00000623023 402 ntBASIC0.92□□□□□ -2.26
HLA-DMBP28068 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC0.92□□□□□ -2.26
HLA-DMBP28068 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC0.92□□□□□ -2.26
HLA-DMBP28068 AC092104.1-201ENST00000497346 1441 ntBASIC0.91□□□□□ -2.26
HLA-DMBP28068 AC233981.2-201ENST00000611524 1614 ntBASIC0.91□□□□□ -2.26
HLA-DMBP28068 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC0.91□□□□□ -2.26
HLA-DMBP28068 RNU6-212P-201ENST00000362642 104 ntBASIC0.91□□□□□ -2.26
HLA-DMBP28068 RNU6-433P-201ENST00000363216 104 ntBASIC0.91□□□□□ -2.26
HLA-DMBP28068 RNU6-112P-201ENST00000363599 104 ntBASIC0.91□□□□□ -2.26
HLA-DMBP28068 SNORA62.1-201ENST00000364287 154 ntBASIC0.91□□□□□ -2.26
HLA-DMBP28068 SNORD114-6-201ENST00000364393 72 ntBASIC0.91□□□□□ -2.26
HLA-DMBP28068 SNORD116.1-201ENST00000365628 92 ntBASIC0.91□□□□□ -2.26
HLA-DMBP28068 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC0.91□□□□□ -2.26
HLA-DMBP28068 AC139712.2-201ENST00000424302 339 ntBASIC0.91□□□□□ -2.26
HLA-DMBP28068 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC0.91□□□□□ -2.26
HLA-DMBP28068 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC0.91□□□□□ -2.26
HLA-DMBP28068 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC0.91□□□□□ -2.26
HLA-DMBP28068 AL358794.1-201ENST00000445689 381 ntBASIC0.91□□□□□ -2.26
HLA-DMBP28068 RPL23AP35-201ENST00000451906 501 ntBASIC0.91□□□□□ -2.26
HLA-DMBP28068 HMGN1P7-201ENST00000491722 313 ntBASIC0.91□□□□□ -2.26
HLA-DMBP28068 AC009646.1-201ENST00000510455 318 ntBASIC0.91□□□□□ -2.26
HLA-DMBP28068 RNU6-276P-201ENST00000516114 96 ntBASIC0.91□□□□□ -2.26
HLA-DMBP28068 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC0.91□□□□□ -2.26
HLA-DMBP28068 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC0.91□□□□□ -2.26
HLA-DMBP28068 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC0.91□□□□□ -2.26
HLA-DMBP28068 MIR3660-201ENST00000584845 100 ntBASIC0.91□□□□□ -2.26
HLA-DMBP28068 AC098848.2-201ENST00000588023 330 ntBASIC0.91□□□□□ -2.26
HLA-DMBP28068 AP000860.1-201ENST00000605250 559 ntBASIC0.91□□□□□ -2.26
HLA-DMBP28068 AL590240.4-201ENST00000616908 390 ntBASIC0.91□□□□□ -2.26
HLA-DMBP28068 AC024940.5-201ENST00000622889 474 ntBASIC0.91□□□□□ -2.26
HLA-DMBP28068 AC130454.1-201ENST00000622948 401 ntBASIC0.91□□□□□ -2.26
HLA-DMBP28068 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC0.91□□□□□ -2.26
HLA-DMBP28068 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC0.91□□□□□ -2.26
HLA-DMBP28068 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC0.91□□□□□ -2.26
HLA-DMBP28068 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC0.91□□□□□ -2.26
HLA-DMBP28068 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC0.9□□□□□ -2.26
HLA-DMBP28068 OR4G2P-201ENST00000328113 903 ntBASIC0.9□□□□□ -2.27
HLA-DMBP28068 RNY4P24-201ENST00000362735 96 ntBASIC0.9□□□□□ -2.27
HLA-DMBP28068 SNORA25.9-201ENST00000365087 128 ntBASIC0.9□□□□□ -2.27
HLA-DMBP28068 RNU6-296P-201ENST00000384608 107 ntBASIC0.9□□□□□ -2.27
HLA-DMBP28068 PIGPP2-201ENST00000411569 458 ntBASIC0.9□□□□□ -2.27
HLA-DMBP28068 AP000275.1-201ENST00000411943 390 ntBASIC0.9□□□□□ -2.27
HLA-DMBP28068 MTATP6P20-201ENST00000414147 562 ntBASIC0.9□□□□□ -2.27
HLA-DMBP28068 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC0.9□□□□□ -2.27
HLA-DMBP28068 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC0.9□□□□□ -2.27
HLA-DMBP28068 MRPL35P3-201ENST00000421557 364 ntBASIC0.9□□□□□ -2.27
HLA-DMBP28068 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC0.9□□□□□ -2.27
HLA-DMBP28068 AL008629.1-201ENST00000438615 184 ntBASIC0.9□□□□□ -2.27
HLA-DMBP28068 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC0.9□□□□□ -2.27
HLA-DMBP28068 AL022238.1-201ENST00000442557 355 ntBASIC0.9□□□□□ -2.27
HLA-DMBP28068 TAF9P1-201ENST00000445421 515 ntBASIC0.9□□□□□ -2.27
HLA-DMBP28068 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC0.9□□□□□ -2.27
HLA-DMBP28068 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC0.9□□□□□ -2.27
HLA-DMBP28068 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC0.9□□□□□ -2.27
HLA-DMBP28068 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC0.9□□□□□ -2.27
HLA-DMBP28068 TAF9P2-201ENST00000454958 515 ntBASIC0.9□□□□□ -2.27
HLA-DMBP28068 RNU1-131P-201ENST00000458943 161 ntBASIC0.9□□□□□ -2.27
HLA-DMBP28068 AC132942.1-201ENST00000486753 483 ntBASIC0.9□□□□□ -2.27
HLA-DMBP28068 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC0.9□□□□□ -2.27
HLA-DMBP28068 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC0.9□□□□□ -2.27
HLA-DMBP28068 AC112206.3-201ENST00000514578 389 ntBASIC0.9□□□□□ -2.27
HLA-DMBP28068 SNORA19.3-201ENST00000516165 130 ntBASIC0.9□□□□□ -2.27
HLA-DMBP28068 Y_RNA.689-201ENST00000516589 107 ntBASIC0.9□□□□□ -2.27
HLA-DMBP28068 SNORA43.2-201ENST00000516652 128 ntBASIC0.9□□□□□ -2.27
HLA-DMBP28068 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC0.9□□□□□ -2.27
HLA-DMBP28068 AP003122.4-201ENST00000530980 758 ntBASIC0.9□□□□□ -2.27
HLA-DMBP28068 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC0.9□□□□□ -2.27
HLA-DMBP28068 AC084364.2-201ENST00000546924 395 ntBASIC0.9□□□□□ -2.27
HLA-DMBP28068 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC0.9□□□□□ -2.27
HLA-DMBP28068 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC0.9□□□□□ -2.27
HLA-DMBP28068 AC012414.6-201ENST00000568241 401 ntBASIC0.9□□□□□ -2.27
HLA-DMBP28068 AL353778.1-201ENST00000603149 408 ntBASIC0.9□□□□□ -2.27
HLA-DMBP28068 AC073413.2-201ENST00000604332 360 ntBASIC0.9□□□□□ -2.27
HLA-DMBP28068 AC108747.1-201ENST00000609508 535 ntBASIC0.9□□□□□ -2.27
HLA-DMBP28068 MIR8070-201ENST00000616510 88 ntBASIC0.9□□□□□ -2.27
HLA-DMBP28068 AL356596.1-201ENST00000624230 379 ntBASIC0.9□□□□□ -2.27
HLA-DMBP28068 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC0.9□□□□□ -2.27
HLA-DMBP28068 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC0.9□□□□□ -2.27
HLA-DMBP28068 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC0.9□□□□□ -2.27
HLA-DMBP28068 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC0.89□□□□□ -2.27
HLA-DMBP28068 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC0.89□□□□□ -2.27
HLA-DMBP28068 MTND5P9-201ENST00000503854 1755 ntBASIC0.89□□□□□ -2.27
HLA-DMBP28068 Y_RNA.46-201ENST00000362695 102 ntBASIC0.89□□□□□ -2.27
HLA-DMBP28068 MIR10A-201ENST00000385043 110 ntBASIC0.89□□□□□ -2.27
HLA-DMBP28068 MIR1285-1-201ENST00000408593 84 ntBASIC0.89□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 115.2 ms