Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 MIR4303-201ENST00000581299 66 ntBASIC1.38□□□□□ -2.19
SHOX2O60902 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.38□□□□□ -2.19
SHOX2O60902 CLIC4P2-201ENST00000601934 717 ntBASIC1.38□□□□□ -2.19
SHOX2O60902 AC012065.4-201ENST00000602445 679 ntBASIC1.38□□□□□ -2.19
SHOX2O60902 MTND3P19-201ENST00000603825 345 ntBASIC1.38□□□□□ -2.19
SHOX2O60902 AC112187.2-201ENST00000604345 283 ntBASIC1.38□□□□□ -2.19
SHOX2O60902 AL022154.1-201ENST00000604698 785 ntBASIC1.38□□□□□ -2.19
SHOX2O60902 AL022345.1-201ENST00000607292 135 ntBASIC1.38□□□□□ -2.19
SHOX2O60902 MIR15A-201ENST00000607334 83 ntBASIC1.38□□□□□ -2.19
SHOX2O60902 AC130324.3-201ENST00000614165 542 ntBASIC1.38□□□□□ -2.19
SHOX2O60902 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC1.38□□□□□ -2.19
SHOX2O60902 RNU4-92P-201ENST00000363783 136 ntBASIC1.37□□□□□ -2.19
SHOX2O60902 RNU6-960P-201ENST00000364056 120 ntBASIC1.37□□□□□ -2.19
SHOX2O60902 RNU5E-6P-201ENST00000365574 115 ntBASIC1.37□□□□□ -2.19
SHOX2O60902 RNU6-622P-201ENST00000384272 103 ntBASIC1.37□□□□□ -2.19
SHOX2O60902 MIR517C-201ENST00000385103 95 ntBASIC1.37□□□□□ -2.19
SHOX2O60902 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC1.37□□□□□ -2.19
SHOX2O60902 SNORA40.4-201ENST00000390971 128 ntBASIC1.37□□□□□ -2.19
SHOX2O60902 RNU2-23P-201ENST00000410545 195 ntBASIC1.37□□□□□ -2.19
SHOX2O60902 RNU4-22P-201ENST00000411058 166 ntBASIC1.37□□□□□ -2.19
SHOX2O60902 Y_RNA.623-201ENST00000411128 95 ntBASIC1.37□□□□□ -2.19
SHOX2O60902 PIGPP2-201ENST00000411569 458 ntBASIC1.37□□□□□ -2.19
SHOX2O60902 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC1.37□□□□□ -2.19
SHOX2O60902 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC1.37□□□□□ -2.19
SHOX2O60902 SDAD1P3-201ENST00000427380 333 ntBASIC1.37□□□□□ -2.19
SHOX2O60902 NDUFB1P2-201ENST00000449477 176 ntBASIC1.37□□□□□ -2.19
SHOX2O60902 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC1.37□□□□□ -2.19
SHOX2O60902 ZNF736P4Y-201ENST00000454995 1243 ntBASIC1.37□□□□□ -2.19
SHOX2O60902 AL583843.1-201ENST00000456070 346 ntBASIC1.37□□□□□ -2.19
SHOX2O60902 MTATP6P15-201ENST00000527233 835 ntBASIC1.37□□□□□ -2.19
SHOX2O60902 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.37□□□□□ -2.19
SHOX2O60902 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC1.37□□□□□ -2.19
SHOX2O60902 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC1.37□□□□□ -2.19
SHOX2O60902 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC1.37□□□□□ -2.19
SHOX2O60902 AC016925.2-201ENST00000605108 242 ntBASIC1.37□□□□□ -2.19
SHOX2O60902 AL050343.2-201ENST00000607338 280 ntBASIC1.37□□□□□ -2.19
SHOX2O60902 AC012360.2-201ENST00000609349 391 ntBASIC1.37□□□□□ -2.19
SHOX2O60902 AC097478.2-201ENST00000610572 514 ntBASIC1.37□□□□□ -2.19
SHOX2O60902 SCARNA4-202ENST00000625402 129 ntBASIC1.37□□□□□ -2.19
SHOX2O60902 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.37□□□□□ -2.19
SHOX2O60902 RNU6-942P-201ENST00000363002 107 ntBASIC1.36□□□□□ -2.19
SHOX2O60902 RNU4-68P-201ENST00000364314 141 ntBASIC1.36□□□□□ -2.19
SHOX2O60902 RNU6-946P-201ENST00000383878 107 ntBASIC1.36□□□□□ -2.19
SHOX2O60902 RNU6-72P-201ENST00000384285 79 ntBASIC1.36□□□□□ -2.19
SHOX2O60902 RNA5SP390-201ENST00000410191 113 ntBASIC1.36□□□□□ -2.19
SHOX2O60902 RNA5SP501-201ENST00000410990 112 ntBASIC1.36□□□□□ -2.19
SHOX2O60902 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC1.36□□□□□ -2.19
SHOX2O60902 AL354695.1-201ENST00000427935 228 ntBASIC1.36□□□□□ -2.19
SHOX2O60902 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC1.36□□□□□ -2.19
SHOX2O60902 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC1.36□□□□□ -2.19
SHOX2O60902 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC1.36□□□□□ -2.19
SHOX2O60902 RPL31P58-201ENST00000469001 379 ntBASIC1.36□□□□□ -2.19
SHOX2O60902 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC1.36□□□□□ -2.19
SHOX2O60902 AC011979.2-201ENST00000527568 352 ntBASIC1.36□□□□□ -2.19
SHOX2O60902 AL137100.2-201ENST00000555786 315 ntBASIC1.36□□□□□ -2.19
SHOX2O60902 AC015720.1-201ENST00000565251 277 ntBASIC1.36□□□□□ -2.19
SHOX2O60902 RN7SL793P-201ENST00000583259 296 ntBASIC1.36□□□□□ -2.19
SHOX2O60902 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC1.36□□□□□ -2.19
SHOX2O60902 BNIP3P31-201ENST00000604515 566 ntBASIC1.36□□□□□ -2.19
SHOX2O60902 Z82243.1-201ENST00000609432 473 ntBASIC1.36□□□□□ -2.19
SHOX2O60902 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.36□□□□□ -2.19
SHOX2O60902 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.36□□□□□ -2.19
SHOX2O60902 AL138960.2-201ENST00000625145 535 ntBASIC1.36□□□□□ -2.19
SHOX2O60902 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC1.36□□□□□ -2.19
SHOX2O60902 ZNF680P1-201ENST00000436625 1469 ntBASIC1.36□□□□□ -2.19
SHOX2O60902 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.35□□□□□ -2.19
SHOX2O60902 CBX3P1-201ENST00000325243 554 ntBASIC1.35□□□□□ -2.19
SHOX2O60902 Y_RNA.99-201ENST00000363138 105 ntBASIC1.35□□□□□ -2.19
SHOX2O60902 RNU6-433P-201ENST00000363216 104 ntBASIC1.35□□□□□ -2.19
SHOX2O60902 RNU6-1164P-201ENST00000364428 107 ntBASIC1.35□□□□□ -2.19
SHOX2O60902 MIR597-201ENST00000384968 97 ntBASIC1.35□□□□□ -2.19
SHOX2O60902 MTND5P25-201ENST00000430499 799 ntBASIC1.35□□□□□ -2.19
SHOX2O60902 AL365400.1-201ENST00000431854 640 ntBASIC1.35□□□□□ -2.19
SHOX2O60902 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC1.35□□□□□ -2.19
SHOX2O60902 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
SHOX2O60902 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.35□□□□□ -2.19
SHOX2O60902 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.35□□□□□ -2.19
SHOX2O60902 AC090821.2-201ENST00000523552 176 ntBASIC1.35□□□□□ -2.19
SHOX2O60902 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.35□□□□□ -2.19
SHOX2O60902 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC1.35□□□□□ -2.19
SHOX2O60902 AL353778.1-201ENST00000603149 408 ntBASIC1.35□□□□□ -2.19
SHOX2O60902 AL138889.2-201ENST00000603883 242 ntBASIC1.35□□□□□ -2.19
SHOX2O60902 AC080013.3-201ENST00000606839 578 ntBASIC1.35□□□□□ -2.19
SHOX2O60902 AC018645.2-201ENST00000609151 472 ntBASIC1.35□□□□□ -2.19
SHOX2O60902 AC004908.3-201ENST00000610248 625 ntBASIC1.35□□□□□ -2.19
SHOX2O60902 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.35□□□□□ -2.19
SHOX2O60902 AC024940.5-201ENST00000622889 474 ntBASIC1.35□□□□□ -2.19
SHOX2O60902 AC004808.1-201ENST00000627671 721 ntBASIC1.35□□□□□ -2.19
SHOX2O60902 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.19
SHOX2O60902 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.34□□□□□ -2.19
SHOX2O60902 OR4G2P-201ENST00000328113 903 ntBASIC1.34□□□□□ -2.19
SHOX2O60902 Y_RNA.46-201ENST00000362695 102 ntBASIC1.34□□□□□ -2.19
SHOX2O60902 SNORA75B-201ENST00000384053 137 ntBASIC1.34□□□□□ -2.19
SHOX2O60902 BTF3L4P2-201ENST00000392798 346 ntBASIC1.34□□□□□ -2.19
SHOX2O60902 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC1.34□□□□□ -2.19
SHOX2O60902 AL513185.2-201ENST00000425543 193 ntBASIC1.34□□□□□ -2.19
SHOX2O60902 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC1.34□□□□□ -2.19
SHOX2O60902 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC1.34□□□□□ -2.19
SHOX2O60902 AC021146.2-201ENST00000504736 556 ntBASIC1.34□□□□□ -2.19
SHOX2O60902 AC119751.4-201ENST00000507498 357 ntBASIC1.34□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 85.6 ms