Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 RNU4-18P-201ENST00000516751 149 ntBASIC-0.07□□□□□ -2.42
CCDC88BA6NC98 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC-0.07□□□□□ -2.42
CCDC88BA6NC98 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC-0.07□□□□□ -2.42
CCDC88BA6NC98 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC-0.07□□□□□ -2.42
CCDC88BA6NC98 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC-0.07□□□□□ -2.42
CCDC88BA6NC98 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC-0.07□□□□□ -2.42
CCDC88BA6NC98 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC-0.08□□□□□ -2.42
CCDC88BA6NC98 AL589872.1-201ENST00000426602 288 ntBASIC-0.08□□□□□ -2.42
CCDC88BA6NC98 RPS15AP9-201ENST00000439856 381 ntBASIC-0.08□□□□□ -2.42
CCDC88BA6NC98 RPL30P1-201ENST00000488676 339 ntBASIC-0.08□□□□□ -2.42
CCDC88BA6NC98 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC-0.08□□□□□ -2.42
CCDC88BA6NC98 SNORA68.3-201ENST00000515906 83 ntBASIC-0.08□□□□□ -2.42
CCDC88BA6NC98 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC-0.08□□□□□ -2.42
CCDC88BA6NC98 AP000763.2-201ENST00000540641 163 ntBASIC-0.08□□□□□ -2.42
CCDC88BA6NC98 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC-0.08□□□□□ -2.42
CCDC88BA6NC98 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC-0.08□□□□□ -2.42
CCDC88BA6NC98 AC015688.6-201ENST00000577737 104 ntBASIC-0.08□□□□□ -2.42
CCDC88BA6NC98 AC060771.1-201ENST00000582031 164 ntBASIC-0.08□□□□□ -2.42
CCDC88BA6NC98 AL671309.1-201ENST00000603750 544 ntBASIC-0.08□□□□□ -2.42
CCDC88BA6NC98 LARP7P1-201ENST00000605576 316 ntBASIC-0.08□□□□□ -2.42
CCDC88BA6NC98 AC024257.5-201ENST00000612739 531 ntBASIC-0.08□□□□□ -2.42
CCDC88BA6NC98 AC107075.1-201ENST00000613695 314 ntBASIC-0.08□□□□□ -2.42
CCDC88BA6NC98 AC009032.1-201ENST00000617574 431 ntBASIC-0.08□□□□□ -2.42
CCDC88BA6NC98 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC-0.08□□□□□ -2.42
CCDC88BA6NC98 U6.107-201ENST00000637108 79 ntBASIC-0.08□□□□□ -2.42
CCDC88BA6NC98 MTND5P31-201ENST00000419366 1374 ntBASIC-0.08□□□□□ -2.42
CCDC88BA6NC98 MIR409-201ENST00000362237 79 ntBASIC-0.09□□□□□ -2.42
CCDC88BA6NC98 RNU6-23P-201ENST00000363283 107 ntBASIC-0.09□□□□□ -2.42
CCDC88BA6NC98 RNU6-743P-201ENST00000364151 106 ntBASIC-0.09□□□□□ -2.42
CCDC88BA6NC98 RNU4-45P-201ENST00000365469 141 ntBASIC-0.09□□□□□ -2.42
CCDC88BA6NC98 SKA2P1-201ENST00000425592 390 ntBASIC-0.09□□□□□ -2.42
CCDC88BA6NC98 RPP40P1-201ENST00000426762 456 ntBASIC-0.09□□□□□ -2.42
CCDC88BA6NC98 AC108740.1-201ENST00000498629 225 ntBASIC-0.09□□□□□ -2.42
CCDC88BA6NC98 AC022483.1-201ENST00000514020 567 ntBASIC-0.09□□□□□ -2.42
CCDC88BA6NC98 MIR5094-201ENST00000578766 85 ntBASIC-0.09□□□□□ -2.42
CCDC88BA6NC98 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC-0.09□□□□□ -2.42
CCDC88BA6NC98 uc_338.15-201ENST00000615470 191 ntBASIC-0.09□□□□□ -2.42
CCDC88BA6NC98 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC-0.09□□□□□ -2.42
CCDC88BA6NC98 DBF4P1-201ENST00000412976 1892 ntBASIC-0.09□□□□□ -2.42
CCDC88BA6NC98 MIR101-1-201ENST00000362265 75 ntBASIC-0.1□□□□□ -2.42
CCDC88BA6NC98 RNU4-73P-201ENST00000363164 141 ntBASIC-0.1□□□□□ -2.42
CCDC88BA6NC98 SNORD44.1-201ENST00000363202 61 ntBASIC-0.1□□□□□ -2.42
CCDC88BA6NC98 RNA5SP493-201ENST00000364115 91 ntBASIC-0.1□□□□□ -2.42
CCDC88BA6NC98 Y_RNA.324-201ENST00000365165 102 ntBASIC-0.1□□□□□ -2.42
CCDC88BA6NC98 RNU6-546P-201ENST00000383991 107 ntBASIC-0.1□□□□□ -2.42
CCDC88BA6NC98 AL133475.1-201ENST00000404414 305 ntBASIC-0.1□□□□□ -2.42
CCDC88BA6NC98 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.1□□□□□ -2.42
CCDC88BA6NC98 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC-0.1□□□□□ -2.42
CCDC88BA6NC98 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC-0.1□□□□□ -2.42
CCDC88BA6NC98 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC-0.1□□□□□ -2.42
CCDC88BA6NC98 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC-0.1□□□□□ -2.42
CCDC88BA6NC98 AC011005.2-201ENST00000487324 359 ntBASIC-0.1□□□□□ -2.42
CCDC88BA6NC98 AC105758.1-201ENST00000506038 399 ntBASIC-0.1□□□□□ -2.42
CCDC88BA6NC98 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC-0.1□□□□□ -2.42
CCDC88BA6NC98 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC-0.1□□□□□ -2.42
CCDC88BA6NC98 SCARNA16.5-201ENST00000517114 183 ntBASIC-0.1□□□□□ -2.42
CCDC88BA6NC98 IGJP1-201ENST00000522682 475 ntBASIC-0.1□□□□□ -2.42
CCDC88BA6NC98 HMGB1P33-201ENST00000563485 527 ntBASIC-0.1□□□□□ -2.42
CCDC88BA6NC98 AC012557.2-201ENST00000605919 418 ntBASIC-0.1□□□□□ -2.42
CCDC88BA6NC98 AC135803.1-201ENST00000608748 565 ntBASIC-0.1□□□□□ -2.42
CCDC88BA6NC98 OR5AK4P-201ENST00000635912 903 ntBASIC-0.1□□□□□ -2.42
CCDC88BA6NC98 RNU6-296P-201ENST00000384608 107 ntBASIC-0.1□□□□□ -2.43
CCDC88BA6NC98 AL121578.1-201ENST00000428051 892 ntBASIC-0.1□□□□□ -2.43
CCDC88BA6NC98 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC-0.1□□□□□ -2.43
CCDC88BA6NC98 AC099677.2-201ENST00000436385 175 ntBASIC-0.1□□□□□ -2.43
CCDC88BA6NC98 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC-0.1□□□□□ -2.43
CCDC88BA6NC98 AC079598.5-201ENST00000547460 117 ntBASIC-0.1□□□□□ -2.43
CCDC88BA6NC98 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC-0.1□□□□□ -2.43
CCDC88BA6NC98 AL136520.1-202ENST00000555494 763 ntBASIC-0.1□□□□□ -2.43
CCDC88BA6NC98 AC090330.1-201ENST00000588646 764 ntBASIC-0.1□□□□□ -2.43
CCDC88BA6NC98 AL162730.1-201ENST00000605734 292 ntBASIC-0.1□□□□□ -2.43
CCDC88BA6NC98 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC-0.1□□□□□ -2.43
CCDC88BA6NC98 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.11□□□□□ -2.43
CCDC88BA6NC98 AC093422.3-201ENST00000428506 305 ntBASIC-0.11□□□□□ -2.43
CCDC88BA6NC98 C8orf59P1-201ENST00000429930 303 ntBASIC-0.11□□□□□ -2.43
CCDC88BA6NC98 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC-0.11□□□□□ -2.43
CCDC88BA6NC98 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC-0.11□□□□□ -2.43
CCDC88BA6NC98 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC-0.11□□□□□ -2.43
CCDC88BA6NC98 TRAPPC2P7-201ENST00000509650 231 ntBASIC-0.11□□□□□ -2.43
CCDC88BA6NC98 AC011406.1-201ENST00000512440 370 ntBASIC-0.11□□□□□ -2.43
CCDC88BA6NC98 RNU6-581P-201ENST00000516214 105 ntBASIC-0.11□□□□□ -2.43
CCDC88BA6NC98 RNU6-678P-201ENST00000516832 109 ntBASIC-0.11□□□□□ -2.43
CCDC88BA6NC98 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC-0.11□□□□□ -2.43
CCDC88BA6NC98 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC-0.11□□□□□ -2.43
CCDC88BA6NC98 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC-0.11□□□□□ -2.43
CCDC88BA6NC98 MIR3678-201ENST00000578455 94 ntBASIC-0.11□□□□□ -2.43
CCDC88BA6NC98 KATNBL1P5-201ENST00000605015 517 ntBASIC-0.11□□□□□ -2.43
CCDC88BA6NC98 AC004067.1-201ENST00000608733 700 ntBASIC-0.11□□□□□ -2.43
CCDC88BA6NC98 MTCO1P18-201ENST00000455518 1419 ntBASIC-0.12□□□□□ -2.43
CCDC88BA6NC98 RNU6-921P-201ENST00000384361 107 ntBASIC-0.12□□□□□ -2.43
CCDC88BA6NC98 MIR214-201ENST00000385214 110 ntBASIC-0.12□□□□□ -2.43
CCDC88BA6NC98 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC-0.12□□□□□ -2.43
CCDC88BA6NC98 AL035398.1-201ENST00000430869 322 ntBASIC-0.12□□□□□ -2.43
CCDC88BA6NC98 PTGES3P1-201ENST00000439531 483 ntBASIC-0.12□□□□□ -2.43
CCDC88BA6NC98 WDR78-207ENST00000488333 613 ntTSL 3 BASIC-0.12□□□□□ -2.43
CCDC88BA6NC98 AC113410.1-201ENST00000505029 247 ntBASIC-0.12□□□□□ -2.43
CCDC88BA6NC98 MTATP6P9-201ENST00000515039 680 ntBASIC-0.12□□□□□ -2.43
CCDC88BA6NC98 RNA5SP290-201ENST00000517133 127 ntBASIC-0.12□□□□□ -2.43
CCDC88BA6NC98 AC007834.2-201ENST00000536310 343 ntBASIC-0.12□□□□□ -2.43
CCDC88BA6NC98 AC027104.1-201ENST00000563702 681 ntBASIC-0.12□□□□□ -2.43
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms