Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AC104985.2-201ENST00000620598 500 ntBASIC2.57□□□□□ -2
SIX2Q9NPC8 AL133216.2-202ENST00000634512 349 ntBASIC2.57□□□□□ -2
SIX2Q9NPC8 AC099654.5-201ENST00000636479 350 ntBASIC2.57□□□□□ -2
SIX2Q9NPC8 TPTEP1-208ENST00000636884 213 ntBASIC2.57□□□□□ -2
SIX2Q9NPC8 AC010680.1-201ENST00000590024 3590 ntBASIC2.57□□□□□ -2
SIX2Q9NPC8 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.56□□□□□ -2
SIX2Q9NPC8 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC2.56□□□□□ -2
SIX2Q9NPC8 SNORA5B-201ENST00000363786 132 ntBASIC2.56□□□□□ -2
SIX2Q9NPC8 RNU6-1013P-201ENST00000384180 107 ntBASIC2.56□□□□□ -2
SIX2Q9NPC8 RNA5SP252-201ENST00000391131 119 ntBASIC2.56□□□□□ -2
SIX2Q9NPC8 EIF4EBP2P3-201ENST00000403144 334 ntBASIC2.56□□□□□ -2
SIX2Q9NPC8 AL356057.2-201ENST00000403318 432 ntBASIC2.56□□□□□ -2
SIX2Q9NPC8 AL122016.1-201ENST00000403365 367 ntBASIC2.56□□□□□ -2
SIX2Q9NPC8 VN1R36P-201ENST00000414936 291 ntBASIC2.56□□□□□ -2
SIX2Q9NPC8 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC2.56□□□□□ -2
SIX2Q9NPC8 HMGB1P9-201ENST00000429856 646 ntBASIC2.56□□□□□ -2
SIX2Q9NPC8 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.56□□□□□ -2
SIX2Q9NPC8 MTND4LP16-201ENST00000440828 295 ntBASIC2.56□□□□□ -2
SIX2Q9NPC8 AC093019.1-201ENST00000443135 252 ntBASIC2.56□□□□□ -2
SIX2Q9NPC8 AC233279.1-201ENST00000455300 423 ntBASIC2.56□□□□□ -2
SIX2Q9NPC8 AMD1P1-201ENST00000457220 922 ntBASIC2.56□□□□□ -2
SIX2Q9NPC8 RPL26P9-201ENST00000457466 433 ntBASIC2.56□□□□□ -2
SIX2Q9NPC8 RNU7-138P-201ENST00000459479 64 ntBASIC2.56□□□□□ -2
SIX2Q9NPC8 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.56□□□□□ -2
SIX2Q9NPC8 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC2.56□□□□□ -2
SIX2Q9NPC8 RNU6-1088P-201ENST00000516850 104 ntBASIC2.56□□□□□ -2
SIX2Q9NPC8 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC2.56□□□□□ -2
SIX2Q9NPC8 RAB11AP2-201ENST00000545905 639 ntBASIC2.56□□□□□ -2
SIX2Q9NPC8 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC2.56□□□□□ -2
SIX2Q9NPC8 AC005668.1-201ENST00000571142 476 ntBASIC2.56□□□□□ -2
SIX2Q9NPC8 MIR3672-201ENST00000584290 82 ntBASIC2.56□□□□□ -2
SIX2Q9NPC8 AC023043.2-201ENST00000589678 1026 ntBASIC2.56□□□□□ -2
SIX2Q9NPC8 AL117336.2-201ENST00000602435 335 ntBASIC2.56□□□□□ -2
SIX2Q9NPC8 MTND4LP5-201ENST00000605152 292 ntBASIC2.56□□□□□ -2
SIX2Q9NPC8 AC123912.5-201ENST00000605470 343 ntBASIC2.56□□□□□ -2
SIX2Q9NPC8 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC2.56□□□□□ -2
SIX2Q9NPC8 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC2.56□□□□□ -2
SIX2Q9NPC8 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.56□□□□□ -2
SIX2Q9NPC8 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.56□□□□□ -2
SIX2Q9NPC8 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
SIX2Q9NPC8 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.55□□□□□ -2
SIX2Q9NPC8 AC138393.1-203ENST00000327086 343 ntBASIC2.55□□□□□ -2
SIX2Q9NPC8 Y_RNA.135-201ENST00000363439 95 ntBASIC2.55□□□□□ -2
SIX2Q9NPC8 RNU6-198P-201ENST00000384258 104 ntBASIC2.55□□□□□ -2
SIX2Q9NPC8 MIR518D-201ENST00000385014 87 ntBASIC2.55□□□□□ -2
SIX2Q9NPC8 MORN2-203ENST00000409131 544 ntTSL 5 BASIC2.55□□□□□ -2
SIX2Q9NPC8 ATG3P1-201ENST00000419507 911 ntBASIC2.55□□□□□ -2
SIX2Q9NPC8 PGBD4P6-201ENST00000421501 610 ntBASIC2.55□□□□□ -2
SIX2Q9NPC8 AC018634.1-201ENST00000437554 401 ntBASIC2.55□□□□□ -2
SIX2Q9NPC8 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC2.55□□□□□ -2
SIX2Q9NPC8 HMGB1P18-201ENST00000438801 619 ntBASIC2.55□□□□□ -2
SIX2Q9NPC8 AL714022.1-201ENST00000439897 151 ntBASIC2.55□□□□□ -2
SIX2Q9NPC8 AL359672.1-201ENST00000442302 409 ntBASIC2.55□□□□□ -2
SIX2Q9NPC8 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.55□□□□□ -2
SIX2Q9NPC8 Y_RNA.691-201ENST00000516611 103 ntBASIC2.55□□□□□ -2
SIX2Q9NPC8 RNU6-273P-201ENST00000516937 96 ntBASIC2.55□□□□□ -2
SIX2Q9NPC8 RNA5SP402-201ENST00000517148 110 ntBASIC2.55□□□□□ -2
SIX2Q9NPC8 SNORA31.26-201ENST00000517250 137 ntBASIC2.55□□□□□ -2
SIX2Q9NPC8 AC087854.1-201ENST00000519706 414 ntBASIC2.55□□□□□ -2
SIX2Q9NPC8 AC105029.1-201ENST00000520250 669 ntBASIC2.55□□□□□ -2
SIX2Q9NPC8 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.55□□□□□ -2
SIX2Q9NPC8 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC2.55□□□□□ -2
SIX2Q9NPC8 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.55□□□□□ -2
SIX2Q9NPC8 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC2.55□□□□□ -2
SIX2Q9NPC8 NUTF2P8-201ENST00000604593 363 ntBASIC2.55□□□□□ -2
SIX2Q9NPC8 AC046143.2-201ENST00000609789 160 ntBASIC2.55□□□□□ -2
SIX2Q9NPC8 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.55□□□□□ -2
SIX2Q9NPC8 AL138726.1-201ENST00000614873 333 ntBASIC2.55□□□□□ -2
SIX2Q9NPC8 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.55□□□□□ -2
SIX2Q9NPC8 IL33-203ENST00000456383 2501 ntTSL 5 BASIC2.54□□□□□ -2
SIX2Q9NPC8 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC2.54□□□□□ -2
SIX2Q9NPC8 Y_RNA.212-201ENST00000364177 102 ntBASIC2.54□□□□□ -2
SIX2Q9NPC8 RNU6-128P-201ENST00000383976 107 ntBASIC2.54□□□□□ -2
SIX2Q9NPC8 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC2.54□□□□□ -2
SIX2Q9NPC8 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.54□□□□□ -2
SIX2Q9NPC8 U3.37-201ENST00000408528 213 ntBASIC2.54□□□□□ -2
SIX2Q9NPC8 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.54□□□□□ -2
SIX2Q9NPC8 BPY2DP-201ENST00000422208 265 ntBASIC2.54□□□□□ -2
SIX2Q9NPC8 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.54□□□□□ -2
SIX2Q9NPC8 HMGN2P20-201ENST00000437531 273 ntBASIC2.54□□□□□ -2
SIX2Q9NPC8 AC098831.1-201ENST00000440661 216 ntBASIC2.54□□□□□ -2
SIX2Q9NPC8 AC104389.3-201ENST00000445629 235 ntBASIC2.54□□□□□ -2
SIX2Q9NPC8 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC2.54□□□□□ -2
SIX2Q9NPC8 AP001486.1-201ENST00000463339 476 ntBASIC2.54□□□□□ -2
SIX2Q9NPC8 FGF7P4-201ENST00000509595 295 ntBASIC2.54□□□□□ -2
SIX2Q9NPC8 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC2.54□□□□□ -2
SIX2Q9NPC8 AC008549.1-201ENST00000512900 643 ntBASIC2.54□□□□□ -2
SIX2Q9NPC8 AP005597.4-201ENST00000526762 229 ntBASIC2.54□□□□□ -2
SIX2Q9NPC8 AC025423.5-201ENST00000550230 219 ntBASIC2.54□□□□□ -2
SIX2Q9NPC8 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.54□□□□□ -2
SIX2Q9NPC8 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.54□□□□□ -2
SIX2Q9NPC8 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC2.54□□□□□ -2
SIX2Q9NPC8 HMGN2P15-201ENST00000585707 270 ntBASIC2.54□□□□□ -2
SIX2Q9NPC8 AL670379.10-201ENST00000604330 253 ntBASIC2.54□□□□□ -2
SIX2Q9NPC8 AL670379.9-201ENST00000605428 253 ntBASIC2.54□□□□□ -2
SIX2Q9NPC8 RNU6-85P-201ENST00000605989 107 ntBASIC2.54□□□□□ -2
SIX2Q9NPC8 AL132765.2-201ENST00000610812 351 ntBASIC2.54□□□□□ -2
SIX2Q9NPC8 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC2.54□□□□□ -2
SIX2Q9NPC8 RMST_7.1-201ENST00000621935 268 ntBASIC2.54□□□□□ -2
SIX2Q9NPC8 Z69720.2-201ENST00000624755 279 ntBASIC2.54□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 136.2 ms