Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AP001486.1-201ENST00000463339 476 ntBASIC2.55□□□□□ -2
USP28Q96RU2 DYNLL1P5-201ENST00000467158 270 ntBASIC2.55□□□□□ -2
USP28Q96RU2 AC087884.1-201ENST00000469738 328 ntBASIC2.55□□□□□ -2
USP28Q96RU2 MTND3P25-201ENST00000509243 135 ntBASIC2.55□□□□□ -2
USP28Q96RU2 RNU2-69P-201ENST00000516061 100 ntBASIC2.55□□□□□ -2
USP28Q96RU2 RNU1-104P-201ENST00000517280 175 ntBASIC2.55□□□□□ -2
USP28Q96RU2 MTND4P7-201ENST00000523876 130 ntBASIC2.55□□□□□ -2
USP28Q96RU2 AL157871.3-201ENST00000557231 293 ntBASIC2.55□□□□□ -2
USP28Q96RU2 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.55□□□□□ -2
USP28Q96RU2 AC007938.3-201ENST00000604965 623 ntBASIC2.55□□□□□ -2
USP28Q96RU2 AC092807.2-201ENST00000609367 243 ntBASIC2.55□□□□□ -2
USP28Q96RU2 AL355073.2-201ENST00000612106 557 ntBASIC2.55□□□□□ -2
USP28Q96RU2 uc_338.11-201ENST00000619132 160 ntBASIC2.55□□□□□ -2
USP28Q96RU2 AL136221.1-201ENST00000621449 509 ntBASIC2.55□□□□□ -2
USP28Q96RU2 MIR7515-201ENST00000637837 67 ntBASIC2.55□□□□□ -2
USP28Q96RU2 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC2.55□□□□□ -2
USP28Q96RU2 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.54□□□□□ -2
USP28Q96RU2 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.54□□□□□ -2
USP28Q96RU2 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.54□□□□□ -2
USP28Q96RU2 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.54□□□□□ -2
USP28Q96RU2 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
USP28Q96RU2 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
USP28Q96RU2 MIR221-201ENST00000385135 110 ntBASIC2.54□□□□□ -2
USP28Q96RU2 U3.26-201ENST00000391236 204 ntBASIC2.54□□□□□ -2
USP28Q96RU2 RNU6-1025P-201ENST00000410629 104 ntBASIC2.54□□□□□ -2
USP28Q96RU2 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC2.54□□□□□ -2
USP28Q96RU2 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC2.54□□□□□ -2
USP28Q96RU2 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC2.54□□□□□ -2
USP28Q96RU2 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC2.54□□□□□ -2
USP28Q96RU2 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC2.54□□□□□ -2
USP28Q96RU2 CALM1P1-201ENST00000442082 433 ntBASIC2.54□□□□□ -2
USP28Q96RU2 AC083904.1-201ENST00000487828 231 ntBASIC2.54□□□□□ -2
USP28Q96RU2 AC090096.1-201ENST00000489168 390 ntBASIC2.54□□□□□ -2
USP28Q96RU2 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC2.54□□□□□ -2
USP28Q96RU2 AC025465.4-201ENST00000513422 638 ntBASIC2.54□□□□□ -2
USP28Q96RU2 RNU1-86P-201ENST00000516108 154 ntBASIC2.54□□□□□ -2
USP28Q96RU2 RNA5SP24-201ENST00000516478 95 ntBASIC2.54□□□□□ -2
USP28Q96RU2 RNA5SP281-201ENST00000516504 135 ntBASIC2.54□□□□□ -2
USP28Q96RU2 RNU1-107P-201ENST00000516617 154 ntBASIC2.54□□□□□ -2
USP28Q96RU2 SNORA20.3-201ENST00000516880 132 ntBASIC2.54□□□□□ -2
USP28Q96RU2 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.54□□□□□ -2
USP28Q96RU2 AC025755.1-201ENST00000521306 278 ntBASIC2.54□□□□□ -2
USP28Q96RU2 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2.54□□□□□ -2
USP28Q96RU2 CENPUP1-201ENST00000526649 1202 ntBASIC2.54□□□□□ -2
USP28Q96RU2 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC2.54□□□□□ -2
USP28Q96RU2 AL121579.1-201ENST00000555129 305 ntBASIC2.54□□□□□ -2
USP28Q96RU2 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.54□□□□□ -2
USP28Q96RU2 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC2.54□□□□□ -2
USP28Q96RU2 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC2.54□□□□□ -2
USP28Q96RU2 MIR5002-201ENST00000584713 97 ntBASIC2.54□□□□□ -2
USP28Q96RU2 HMGN2P15-201ENST00000585707 270 ntBASIC2.54□□□□□ -2
USP28Q96RU2 BNIP3P25-201ENST00000596023 559 ntBASIC2.54□□□□□ -2
USP28Q96RU2 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.54□□□□□ -2
USP28Q96RU2 AC009831.4-201ENST00000620744 325 ntBASIC2.54□□□□□ -2
USP28Q96RU2 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC2.54□□□□□ -2
USP28Q96RU2 AC009033.1-201ENST00000624279 431 ntBASIC2.54□□□□□ -2
USP28Q96RU2 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
USP28Q96RU2 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.54□□□□□ -2
USP28Q96RU2 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC2.53□□□□□ -2
USP28Q96RU2 AL359693.1-201ENST00000614959 2407 ntBASIC2.53□□□□□ -2
USP28Q96RU2 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.53□□□□□ -2
USP28Q96RU2 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.53□□□□□ -2
USP28Q96RU2 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
USP28Q96RU2 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC2.53□□□□□ -2
USP28Q96RU2 MIRLET7G-201ENST00000362280 84 ntBASIC2.53□□□□□ -2
USP28Q96RU2 Y_RNA.373-201ENST00000365600 103 ntBASIC2.53□□□□□ -2
USP28Q96RU2 RNU6-45P-201ENST00000384471 107 ntBASIC2.53□□□□□ -2
USP28Q96RU2 RNU6-393P-201ENST00000384475 107 ntBASIC2.53□□□□□ -2
USP28Q96RU2 RNU6-1072P-201ENST00000384703 107 ntBASIC2.53□□□□□ -2
USP28Q96RU2 RNU6-443P-201ENST00000384780 107 ntBASIC2.53□□□□□ -2
USP28Q96RU2 RNA5SP219-201ENST00000390940 113 ntBASIC2.53□□□□□ -2
USP28Q96RU2 RNU2-68P-201ENST00000410878 191 ntBASIC2.53□□□□□ -2
USP28Q96RU2 SKA2P1-201ENST00000425592 390 ntBASIC2.53□□□□□ -2
USP28Q96RU2 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.53□□□□□ -2
USP28Q96RU2 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC2.53□□□□□ -2
USP28Q96RU2 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.53□□□□□ -2
USP28Q96RU2 RNU6-507P-201ENST00000516045 100 ntBASIC2.53□□□□□ -2
USP28Q96RU2 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.53□□□□□ -2
USP28Q96RU2 RNU6-143P-201ENST00000516942 93 ntBASIC2.53□□□□□ -2
USP28Q96RU2 AC107953.1-201ENST00000522216 297 ntBASIC2.53□□□□□ -2
USP28Q96RU2 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.53□□□□□ -2
USP28Q96RU2 AC118273.2-201ENST00000532092 465 ntBASIC2.53□□□□□ -2
USP28Q96RU2 OR11H5P-201ENST00000554039 926 ntBASIC2.53□□□□□ -2
USP28Q96RU2 MIR1273C-201ENST00000578669 77 ntBASIC2.53□□□□□ -2
USP28Q96RU2 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC2.53□□□□□ -2
USP28Q96RU2 MIR3162-201ENST00000581818 82 ntBASIC2.53□□□□□ -2
USP28Q96RU2 MIR4658-201ENST00000584344 65 ntBASIC2.53□□□□□ -2
USP28Q96RU2 MIR548AC-201ENST00000585049 88 ntBASIC2.53□□□□□ -2
USP28Q96RU2 VN1R80P-201ENST00000597126 338 ntBASIC2.53□□□□□ -2
USP28Q96RU2 AC092747.3-201ENST00000603769 301 ntBASIC2.53□□□□□ -2
USP28Q96RU2 BNIP3P10-201ENST00000605360 577 ntBASIC2.53□□□□□ -2
USP28Q96RU2 AL449363.1-201ENST00000617815 186 ntBASIC2.53□□□□□ -2
USP28Q96RU2 AC005858.4-201ENST00000623191 700 ntBASIC2.53□□□□□ -2
USP28Q96RU2 AL136360.1-201ENST00000503377 1900 ntBASIC2.52□□□□□ -2.01
USP28Q96RU2 Y_RNA.33-201ENST00000362591 102 ntBASIC2.52□□□□□ -2.01
USP28Q96RU2 SNORA72.1-201ENST00000363485 129 ntBASIC2.52□□□□□ -2.01
USP28Q96RU2 SNORA38-201ENST00000363946 132 ntBASIC2.52□□□□□ -2.01
USP28Q96RU2 SNORA67.1-201ENST00000364749 141 ntBASIC2.52□□□□□ -2.01
USP28Q96RU2 RNU6-1179P-201ENST00000384667 107 ntBASIC2.52□□□□□ -2.01
USP28Q96RU2 Y_RNA.604-201ENST00000410574 102 ntBASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 109.7 ms