Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 AC007991.1-201ENST00000522680 631 ntBASIC3.65□□□□□ -1.83
CLIP3Q96DZ5 AC104576.1-201ENST00000524225 88 ntBASIC3.65□□□□□ -1.83
CLIP3Q96DZ5 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
CLIP3Q96DZ5 CBX3P8-201ENST00000532412 525 ntBASIC3.65□□□□□ -1.83
CLIP3Q96DZ5 HSPE1P20-201ENST00000538133 289 ntBASIC3.65□□□□□ -1.83
CLIP3Q96DZ5 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.65□□□□□ -1.83
CLIP3Q96DZ5 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC3.65□□□□□ -1.83
CLIP3Q96DZ5 AC021739.1-201ENST00000559631 174 ntBASIC3.65□□□□□ -1.83
CLIP3Q96DZ5 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.65□□□□□ -1.83
CLIP3Q96DZ5 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC3.65□□□□□ -1.83
CLIP3Q96DZ5 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.65□□□□□ -1.83
CLIP3Q96DZ5 AL138825.1-201ENST00000618587 192 ntBASIC3.65□□□□□ -1.83
CLIP3Q96DZ5 MIR6075-201ENST00000620782 95 ntBASIC3.65□□□□□ -1.83
CLIP3Q96DZ5 MIR3199-2-201ENST00000636243 86 ntBASIC3.65□□□□□ -1.83
CLIP3Q96DZ5 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
CLIP3Q96DZ5 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.65□□□□□ -1.83
CLIP3Q96DZ5 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.65□□□□□ -1.83
CLIP3Q96DZ5 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
CLIP3Q96DZ5 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
CLIP3Q96DZ5 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
CLIP3Q96DZ5 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.64□□□□□ -1.83
CLIP3Q96DZ5 AL157777.2-201ENST00000258070 137 ntBASIC3.64□□□□□ -1.83
CLIP3Q96DZ5 Y_RNA.48-201ENST00000362710 103 ntBASIC3.64□□□□□ -1.83
CLIP3Q96DZ5 RNU6-770P-201ENST00000363929 105 ntBASIC3.64□□□□□ -1.83
CLIP3Q96DZ5 RNU6-200P-201ENST00000364743 107 ntBASIC3.64□□□□□ -1.83
CLIP3Q96DZ5 RNU6-898P-201ENST00000365627 104 ntBASIC3.64□□□□□ -1.83
CLIP3Q96DZ5 Y_RNA.515-201ENST00000384535 112 ntBASIC3.64□□□□□ -1.83
CLIP3Q96DZ5 MIR518D-201ENST00000385014 87 ntBASIC3.64□□□□□ -1.83
CLIP3Q96DZ5 RPS15AP6-201ENST00000420703 385 ntBASIC3.64□□□□□ -1.83
CLIP3Q96DZ5 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.64□□□□□ -1.83
CLIP3Q96DZ5 AL365496.1-201ENST00000426885 215 ntBASIC3.64□□□□□ -1.83
CLIP3Q96DZ5 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC3.64□□□□□ -1.83
CLIP3Q96DZ5 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC3.64□□□□□ -1.83
CLIP3Q96DZ5 AL358232.1-201ENST00000448030 501 ntBASIC3.64□□□□□ -1.83
CLIP3Q96DZ5 RN7SL93P-201ENST00000463035 293 ntBASIC3.64□□□□□ -1.83
CLIP3Q96DZ5 AC091153.1-201ENST00000466297 402 ntBASIC3.64□□□□□ -1.83
CLIP3Q96DZ5 RPL39P38-201ENST00000467018 153 ntBASIC3.64□□□□□ -1.83
CLIP3Q96DZ5 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC3.64□□□□□ -1.83
CLIP3Q96DZ5 BTF3L4P4-201ENST00000506381 449 ntBASIC3.64□□□□□ -1.83
CLIP3Q96DZ5 Y_RNA.673-201ENST00000516306 88 ntBASIC3.64□□□□□ -1.83
CLIP3Q96DZ5 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.64□□□□□ -1.83
CLIP3Q96DZ5 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC3.64□□□□□ -1.83
CLIP3Q96DZ5 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC3.64□□□□□ -1.83
CLIP3Q96DZ5 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.64□□□□□ -1.83
CLIP3Q96DZ5 AC090517.1-201ENST00000569307 266 ntBASIC3.64□□□□□ -1.83
CLIP3Q96DZ5 SDR42E1P4-201ENST00000620894 481 ntBASIC3.64□□□□□ -1.83
CLIP3Q96DZ5 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.64□□□□□ -1.83
CLIP3Q96DZ5 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.64□□□□□ -1.83
CLIP3Q96DZ5 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.63□□□□□ -1.83
CLIP3Q96DZ5 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
CLIP3Q96DZ5 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
CLIP3Q96DZ5 OR56A5-201ENST00000340110 738 ntBASIC3.63□□□□□ -1.83
CLIP3Q96DZ5 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.63□□□□□ -1.83
CLIP3Q96DZ5 RNU6-799P-201ENST00000363567 107 ntBASIC3.63□□□□□ -1.83
CLIP3Q96DZ5 RNU6-72P-201ENST00000384285 79 ntBASIC3.63□□□□□ -1.83
CLIP3Q96DZ5 U8.11-201ENST00000384699 133 ntBASIC3.63□□□□□ -1.83
CLIP3Q96DZ5 U8.12-201ENST00000384701 133 ntBASIC3.63□□□□□ -1.83
CLIP3Q96DZ5 MIR184-201ENST00000384962 84 ntBASIC3.63□□□□□ -1.83
CLIP3Q96DZ5 AL030996.1-201ENST00000411430 235 ntBASIC3.63□□□□□ -1.83
CLIP3Q96DZ5 AC023141.4-201ENST00000412031 328 ntBASIC3.63□□□□□ -1.83
CLIP3Q96DZ5 RPS3AP12-201ENST00000443616 753 ntBASIC3.63□□□□□ -1.83
CLIP3Q96DZ5 MTCO3P8-201ENST00000453691 755 ntBASIC3.63□□□□□ -1.83
CLIP3Q96DZ5 PCMTD1P1-201ENST00000455560 355 ntBASIC3.63□□□□□ -1.83
CLIP3Q96DZ5 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC3.63□□□□□ -1.83
CLIP3Q96DZ5 U8.18-201ENST00000459285 133 ntBASIC3.63□□□□□ -1.83
CLIP3Q96DZ5 RPL31P61-201ENST00000496160 376 ntBASIC3.63□□□□□ -1.83
CLIP3Q96DZ5 AC113155.1-201ENST00000511141 769 ntBASIC3.63□□□□□ -1.83
CLIP3Q96DZ5 RNU6-111P-201ENST00000517179 105 ntBASIC3.63□□□□□ -1.83
CLIP3Q96DZ5 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
CLIP3Q96DZ5 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.63□□□□□ -1.83
CLIP3Q96DZ5 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.63□□□□□ -1.83
CLIP3Q96DZ5 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.63□□□□□ -1.83
CLIP3Q96DZ5 AC006600.1-201ENST00000572529 153 ntBASIC3.63□□□□□ -1.83
CLIP3Q96DZ5 MIR4444-1-201ENST00000581696 74 ntBASIC3.63□□□□□ -1.83
CLIP3Q96DZ5 MIR4444-2-201ENST00000584390 74 ntBASIC3.63□□□□□ -1.83
CLIP3Q96DZ5 AL160281.1-201ENST00000605307 311 ntBASIC3.63□□□□□ -1.83
CLIP3Q96DZ5 RNU6-85P-201ENST00000605989 107 ntBASIC3.63□□□□□ -1.83
CLIP3Q96DZ5 SCARNA4-202ENST00000625402 129 ntBASIC3.63□□□□□ -1.83
CLIP3Q96DZ5 AC244205.2-202ENST00000635781 342 ntBASIC3.63□□□□□ -1.83
CLIP3Q96DZ5 AL034408.1-202ENST00000636088 415 ntBASIC3.63□□□□□ -1.83
CLIP3Q96DZ5 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.63□□□□□ -1.83
CLIP3Q96DZ5 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.63□□□□□ -1.83
CLIP3Q96DZ5 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
CLIP3Q96DZ5 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
CLIP3Q96DZ5 Y_RNA.19-201ENST00000362462 99 ntBASIC3.62□□□□□ -1.83
CLIP3Q96DZ5 RNY1P16-201ENST00000363063 111 ntBASIC3.62□□□□□ -1.83
CLIP3Q96DZ5 Y_RNA.105-201ENST00000363182 111 ntBASIC3.62□□□□□ -1.83
CLIP3Q96DZ5 RNU1-105P-201ENST00000363470 161 ntBASIC3.62□□□□□ -1.83
CLIP3Q96DZ5 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.62□□□□□ -1.83
CLIP3Q96DZ5 RNU6-33P-201ENST00000384793 107 ntBASIC3.62□□□□□ -1.83
CLIP3Q96DZ5 MIR449B-201ENST00000384995 97 ntBASIC3.62□□□□□ -1.83
CLIP3Q96DZ5 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
CLIP3Q96DZ5 MIR548M-201ENST00000408260 86 ntBASIC3.62□□□□□ -1.83
CLIP3Q96DZ5 U3.37-201ENST00000408528 213 ntBASIC3.62□□□□□ -1.83
CLIP3Q96DZ5 MORN2-203ENST00000409131 544 ntTSL 5 BASIC3.62□□□□□ -1.83
CLIP3Q96DZ5 RPL21P40-201ENST00000428586 483 ntBASIC3.62□□□□□ -1.83
CLIP3Q96DZ5 AC087650.1-201ENST00000431445 468 ntBASIC3.62□□□□□ -1.83
CLIP3Q96DZ5 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.62□□□□□ -1.83
CLIP3Q96DZ5 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.62□□□□□ -1.83
CLIP3Q96DZ5 DAP3P1-201ENST00000441522 278 ntBASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 168.3 ms