Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC2.08□□□□□ -2.08
ZNF540Q8NDQ6 AL033528.1-201ENST00000453780 140 ntBASIC2.08□□□□□ -2.08
ZNF540Q8NDQ6 YWHAEP4-201ENST00000505390 198 ntBASIC2.08□□□□□ -2.08
ZNF540Q8NDQ6 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC2.08□□□□□ -2.08
ZNF540Q8NDQ6 RNU6-720P-201ENST00000516363 108 ntBASIC2.08□□□□□ -2.08
ZNF540Q8NDQ6 RNU6-1220P-201ENST00000517126 108 ntBASIC2.08□□□□□ -2.08
ZNF540Q8NDQ6 RNU6-667P-201ENST00000517186 102 ntBASIC2.08□□□□□ -2.08
ZNF540Q8NDQ6 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC2.08□□□□□ -2.08
ZNF540Q8NDQ6 AP000763.2-201ENST00000540641 163 ntBASIC2.08□□□□□ -2.08
ZNF540Q8NDQ6 AC093249.1-201ENST00000567049 203 ntBASIC2.08□□□□□ -2.08
ZNF540Q8NDQ6 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC2.08□□□□□ -2.08
ZNF540Q8NDQ6 AC068790.2-201ENST00000602601 557 ntBASIC2.08□□□□□ -2.08
ZNF540Q8NDQ6 AL773524.1-201ENST00000614065 229 ntBASIC2.08□□□□□ -2.08
ZNF540Q8NDQ6 AP001506.1-201ENST00000615444 211 ntBASIC2.08□□□□□ -2.08
ZNF540Q8NDQ6 MIR6715A-201ENST00000615929 79 ntBASIC2.08□□□□□ -2.08
ZNF540Q8NDQ6 AC099842.1-201ENST00000619919 596 ntBASIC2.08□□□□□ -2.08
ZNF540Q8NDQ6 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.08□□□□□ -2.08
ZNF540Q8NDQ6 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
ZNF540Q8NDQ6 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 Y_RNA.3-201ENST00000362331 103 ntBASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 RNU6-655P-201ENST00000362858 107 ntBASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 RNA5SP465-201ENST00000391195 109 ntBASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 MIR1261-201ENST00000408659 82 ntBASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 MTND3P17-201ENST00000416968 344 ntBASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 ZNF885P-201ENST00000420174 1098 ntBASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 AC244636.1-201ENST00000421152 228 ntBASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 AC104850.1-201ENST00000435940 476 ntBASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 AL353705.4-201ENST00000449661 238 ntBASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 SNRPFP4-201ENST00000456366 242 ntBASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 MTCO2P29-201ENST00000465212 189 ntBASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 AC006512.1-201ENST00000468816 291 ntBASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 SNORA18.6-201ENST00000516792 115 ntBASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 RNU6-430P-201ENST00000517078 107 ntBASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 EIF1P4-201ENST00000572664 335 ntBASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 AC002984.1-201ENST00000591692 448 ntBASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 APOOP1-201ENST00000604695 592 ntBASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 AL121917.1-203ENST00000605534 577 ntBASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 AC122108.2-201ENST00000611946 526 ntBASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 AC008250.2-201ENST00000615261 205 ntBASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 MIR6766-201ENST00000622641 72 ntBASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 MTND4P1-201ENST00000457501 1466 ntBASIC2.07□□□□□ -2.08
ZNF540Q8NDQ6 OR4G2P-201ENST00000328113 903 ntBASIC2.06□□□□□ -2.08
ZNF540Q8NDQ6 RNU6-611P-201ENST00000384276 104 ntBASIC2.06□□□□□ -2.08
ZNF540Q8NDQ6 RNU6-72P-201ENST00000384285 79 ntBASIC2.06□□□□□ -2.08
ZNF540Q8NDQ6 RPS3AP36-201ENST00000398190 775 ntBASIC2.06□□□□□ -2.08
ZNF540Q8NDQ6 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
ZNF540Q8NDQ6 Y_RNA.599-201ENST00000410489 109 ntBASIC2.06□□□□□ -2.08
ZNF540Q8NDQ6 HMGB3P2-201ENST00000411913 584 ntBASIC2.06□□□□□ -2.08
ZNF540Q8NDQ6 MTCO1P21-201ENST00000416634 589 ntBASIC2.06□□□□□ -2.08
ZNF540Q8NDQ6 AC007283.2-201ENST00000424739 197 ntBASIC2.06□□□□□ -2.08
ZNF540Q8NDQ6 C8orf59P1-201ENST00000429930 303 ntBASIC2.06□□□□□ -2.08
ZNF540Q8NDQ6 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
ZNF540Q8NDQ6 MTCYBP1-201ENST00000454315 1119 ntBASIC2.06□□□□□ -2.08
ZNF540Q8NDQ6 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.06□□□□□ -2.08
ZNF540Q8NDQ6 RPL23AP42-201ENST00000471152 471 ntBASIC2.06□□□□□ -2.08
ZNF540Q8NDQ6 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.06□□□□□ -2.08
ZNF540Q8NDQ6 ANXA2P1-201ENST00000505539 926 ntBASIC2.06□□□□□ -2.08
ZNF540Q8NDQ6 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC2.06□□□□□ -2.08
ZNF540Q8NDQ6 AC234781.5-201ENST00000508429 271 ntBASIC2.06□□□□□ -2.08
ZNF540Q8NDQ6 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC2.06□□□□□ -2.08
ZNF540Q8NDQ6 Y_RNA.672-201ENST00000516289 104 ntBASIC2.06□□□□□ -2.08
ZNF540Q8NDQ6 AC021269.2-201ENST00000532318 330 ntBASIC2.06□□□□□ -2.08
ZNF540Q8NDQ6 AP002453.2-201ENST00000533503 320 ntBASIC2.06□□□□□ -2.08
ZNF540Q8NDQ6 ADI1P3-201ENST00000549509 470 ntBASIC2.06□□□□□ -2.08
ZNF540Q8NDQ6 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.06□□□□□ -2.08
ZNF540Q8NDQ6 MIR4448-201ENST00000584360 86 ntBASIC2.06□□□□□ -2.08
ZNF540Q8NDQ6 AC091805.2-201ENST00000603848 235 ntBASIC2.06□□□□□ -2.08
ZNF540Q8NDQ6 AP002360.4-201ENST00000606980 481 ntBASIC2.06□□□□□ -2.08
ZNF540Q8NDQ6 RNU6-87P-201ENST00000607561 108 ntBASIC2.06□□□□□ -2.08
ZNF540Q8NDQ6 AC091834.1-201ENST00000614543 472 ntBASIC2.06□□□□□ -2.08
ZNF540Q8NDQ6 AP000553.5-201ENST00000641933 54 ntBASIC2.06□□□□□ -2.08
ZNF540Q8NDQ6 AC016717.2-201ENST00000609089 5141 ntBASIC2.06□□□□□ -2.08
ZNF540Q8NDQ6 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC2.06□□□□□ -2.08
ZNF540Q8NDQ6 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 AC009487.4-201ENST00000624969 3585 ntBASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 RNU6-282P-201ENST00000365357 103 ntBASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 RNU6-1032P-201ENST00000384100 107 ntBASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 Y_RNA.516-201ENST00000384541 124 ntBASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 Y_RNA.517-201ENST00000384551 106 ntBASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 MIR518C-201ENST00000384822 101 ntBASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 RNA5SP212-201ENST00000391223 107 ntBASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 RPL23AP32-201ENST00000395315 459 ntBASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 RNA5SP390-201ENST00000410191 113 ntBASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC2.05□□□□□ -2.08
ZNF540Q8NDQ6 C1DP2-201ENST00000418167 426 ntBASIC2.05□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms