Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC2.12□□□□□ -2.07
HDDC3Q8N4P3 AC000111.3-201ENST00000433478 193 ntBASIC2.12□□□□□ -2.07
HDDC3Q8N4P3 USP9YP8-201ENST00000441913 500 ntBASIC2.12□□□□□ -2.07
HDDC3Q8N4P3 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC2.12□□□□□ -2.07
HDDC3Q8N4P3 RNA5SP233-201ENST00000459153 113 ntBASIC2.12□□□□□ -2.07
HDDC3Q8N4P3 RPL30P12-201ENST00000474666 353 ntBASIC2.12□□□□□ -2.07
HDDC3Q8N4P3 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC2.12□□□□□ -2.07
HDDC3Q8N4P3 AP002453.2-201ENST00000533503 320 ntBASIC2.12□□□□□ -2.07
HDDC3Q8N4P3 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC2.12□□□□□ -2.07
HDDC3Q8N4P3 Z82243.1-201ENST00000609432 473 ntBASIC2.12□□□□□ -2.07
HDDC3Q8N4P3 AC093648.1-201ENST00000623546 606 ntBASIC2.12□□□□□ -2.07
HDDC3Q8N4P3 AC007494.3-201ENST00000624660 743 ntBASIC2.12□□□□□ -2.07
HDDC3Q8N4P3 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
HDDC3Q8N4P3 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.12□□□□□ -2.07
HDDC3Q8N4P3 AC008555.8-201ENST00000623602 2168 ntBASIC2.12□□□□□ -2.07
HDDC3Q8N4P3 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.11□□□□□ -2.07
HDDC3Q8N4P3 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
HDDC3Q8N4P3 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
HDDC3Q8N4P3 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
HDDC3Q8N4P3 Y_RNA.40-201ENST00000362645 93 ntBASIC2.11□□□□□ -2.07
HDDC3Q8N4P3 RNU6-78P-201ENST00000362897 107 ntBASIC2.11□□□□□ -2.07
HDDC3Q8N4P3 RNU6-1287P-201ENST00000362914 107 ntBASIC2.11□□□□□ -2.07
HDDC3Q8N4P3 RNU1-17P-201ENST00000363022 152 ntBASIC2.11□□□□□ -2.07
HDDC3Q8N4P3 RNU6-1060P-201ENST00000384664 107 ntBASIC2.11□□□□□ -2.07
HDDC3Q8N4P3 RNA5SP450-201ENST00000411206 102 ntBASIC2.11□□□□□ -2.07
HDDC3Q8N4P3 HMGN1P14-201ENST00000412459 517 ntBASIC2.11□□□□□ -2.07
HDDC3Q8N4P3 OR6C66P-201ENST00000414917 930 ntBASIC2.11□□□□□ -2.07
HDDC3Q8N4P3 AC005005.2-201ENST00000420779 380 ntBASIC2.11□□□□□ -2.07
HDDC3Q8N4P3 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC2.11□□□□□ -2.07
HDDC3Q8N4P3 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC2.11□□□□□ -2.07
HDDC3Q8N4P3 AC079781.2-201ENST00000446424 169 ntBASIC2.11□□□□□ -2.07
HDDC3Q8N4P3 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.11□□□□□ -2.07
HDDC3Q8N4P3 AL118520.1-201ENST00000450770 291 ntBASIC2.11□□□□□ -2.07
HDDC3Q8N4P3 MTND3P25-201ENST00000509243 135 ntBASIC2.11□□□□□ -2.07
HDDC3Q8N4P3 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC2.11□□□□□ -2.07
HDDC3Q8N4P3 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC2.11□□□□□ -2.07
HDDC3Q8N4P3 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC2.11□□□□□ -2.07
HDDC3Q8N4P3 AC137800.2-201ENST00000574375 120 ntBASIC2.11□□□□□ -2.07
HDDC3Q8N4P3 AC023043.2-201ENST00000589678 1026 ntBASIC2.11□□□□□ -2.07
HDDC3Q8N4P3 AL360219.1-201ENST00000610230 366 ntBASIC2.11□□□□□ -2.07
HDDC3Q8N4P3 AC004908.3-201ENST00000610248 625 ntBASIC2.11□□□□□ -2.07
HDDC3Q8N4P3 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.11□□□□□ -2.07
HDDC3Q8N4P3 MTND5P17-201ENST00000418405 1603 ntBASIC2.1□□□□□ -2.07
HDDC3Q8N4P3 MIRLET7G-201ENST00000362280 84 ntBASIC2.1□□□□□ -2.07
HDDC3Q8N4P3 RNU6-527P-201ENST00000363425 104 ntBASIC2.1□□□□□ -2.07
HDDC3Q8N4P3 SNORD115-7-201ENST00000365306 82 ntBASIC2.1□□□□□ -2.07
HDDC3Q8N4P3 MIR29B2-201ENST00000385055 81 ntBASIC2.1□□□□□ -2.07
HDDC3Q8N4P3 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
HDDC3Q8N4P3 MIR676-201ENST00000390702 67 ntBASIC2.1□□□□□ -2.07
HDDC3Q8N4P3 SNORA40.3-201ENST00000390964 122 ntBASIC2.1□□□□□ -2.07
HDDC3Q8N4P3 RNU6-195P-201ENST00000411352 109 ntBASIC2.1□□□□□ -2.07
HDDC3Q8N4P3 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC2.1□□□□□ -2.07
HDDC3Q8N4P3 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC2.1□□□□□ -2.07
HDDC3Q8N4P3 AL365203.2-201ENST00000423444 196 ntBASIC2.1□□□□□ -2.07
HDDC3Q8N4P3 AC096920.1-201ENST00000423991 241 ntBASIC2.1□□□□□ -2.07
HDDC3Q8N4P3 AL445646.1-201ENST00000431784 216 ntBASIC2.1□□□□□ -2.07
HDDC3Q8N4P3 AL591043.1-201ENST00000432461 424 ntBASIC2.1□□□□□ -2.07
HDDC3Q8N4P3 GPR143P-201ENST00000434155 205 ntBASIC2.1□□□□□ -2.07
HDDC3Q8N4P3 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC2.1□□□□□ -2.07
HDDC3Q8N4P3 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC2.1□□□□□ -2.07
HDDC3Q8N4P3 AC245102.2-201ENST00000448956 180 ntBASIC2.1□□□□□ -2.07
HDDC3Q8N4P3 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC2.1□□□□□ -2.07
HDDC3Q8N4P3 AL033528.1-201ENST00000453780 140 ntBASIC2.1□□□□□ -2.07
HDDC3Q8N4P3 RN7SKP210-201ENST00000459176 261 ntBASIC2.1□□□□□ -2.07
HDDC3Q8N4P3 snoU13.14-201ENST00000459372 104 ntBASIC2.1□□□□□ -2.07
HDDC3Q8N4P3 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2.1□□□□□ -2.07
HDDC3Q8N4P3 RN7SKP256-201ENST00000517201 314 ntBASIC2.1□□□□□ -2.07
HDDC3Q8N4P3 AC090572.1-201ENST00000519251 160 ntBASIC2.1□□□□□ -2.07
HDDC3Q8N4P3 CYCSP27-201ENST00000527643 293 ntBASIC2.1□□□□□ -2.07
HDDC3Q8N4P3 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC2.1□□□□□ -2.07
HDDC3Q8N4P3 AC243960.4-201ENST00000600532 288 ntBASIC2.1□□□□□ -2.07
HDDC3Q8N4P3 MIR98-201ENST00000606724 119 ntBASIC2.1□□□□□ -2.07
HDDC3Q8N4P3 RMST_4.1-201ENST00000616886 107 ntBASIC2.1□□□□□ -2.07
HDDC3Q8N4P3 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC2.09□□□□□ -2.07
HDDC3Q8N4P3 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.09□□□□□ -2.07
HDDC3Q8N4P3 ZNF720P1-201ENST00000562403 1939 ntBASIC2.09□□□□□ -2.07
HDDC3Q8N4P3 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.09□□□□□ -2.07
HDDC3Q8N4P3 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
HDDC3Q8N4P3 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
HDDC3Q8N4P3 FARSBP1-201ENST00000435808 1778 ntBASIC2.09□□□□□ -2.07
HDDC3Q8N4P3 SNORA62.1-201ENST00000364287 154 ntBASIC2.09□□□□□ -2.07
HDDC3Q8N4P3 Y_RNA.367-201ENST00000365544 101 ntBASIC2.09□□□□□ -2.07
HDDC3Q8N4P3 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC2.09□□□□□ -2.07
HDDC3Q8N4P3 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC2.09□□□□□ -2.07
HDDC3Q8N4P3 AL353689.1-201ENST00000438895 199 ntBASIC2.09□□□□□ -2.07
HDDC3Q8N4P3 AL031659.1-201ENST00000447075 539 ntBASIC2.09□□□□□ -2.07
HDDC3Q8N4P3 AL133217.1-201ENST00000450980 425 ntBASIC2.09□□□□□ -2.07
HDDC3Q8N4P3 MTCO3P9-201ENST00000506989 781 ntBASIC2.09□□□□□ -2.07
HDDC3Q8N4P3 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC2.09□□□□□ -2.07
HDDC3Q8N4P3 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC2.09□□□□□ -2.07
HDDC3Q8N4P3 MIR4498-201ENST00000577599 66 ntBASIC2.09□□□□□ -2.07
HDDC3Q8N4P3 MIR4760-201ENST00000585040 80 ntBASIC2.09□□□□□ -2.07
HDDC3Q8N4P3 AC073539.2-201ENST00000597113 165 ntBASIC2.09□□□□□ -2.07
HDDC3Q8N4P3 AC005034.5-201ENST00000604219 466 ntBASIC2.09□□□□□ -2.07
HDDC3Q8N4P3 AL627230.6-201ENST00000611129 280 ntBASIC2.09□□□□□ -2.07
HDDC3Q8N4P3 AC087683.2-201ENST00000611384 326 ntBASIC2.09□□□□□ -2.07
HDDC3Q8N4P3 AP001506.1-201ENST00000615444 211 ntBASIC2.09□□□□□ -2.07
HDDC3Q8N4P3 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.09□□□□□ -2.07
HDDC3Q8N4P3 RMST_7.1-201ENST00000621935 268 ntBASIC2.09□□□□□ -2.07
HDDC3Q8N4P3 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 110.2 ms