Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 RPL21P17-201ENST00000397467 475 ntBASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 RNA5SP390-201ENST00000410191 113 ntBASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 AC112220.1-201ENST00000434628 355 ntBASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 NUTF2P3-201ENST00000448540 384 ntBASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 AP001025.1-201ENST00000486139 332 ntBASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 AC025554.1-201ENST00000505641 188 ntBASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 SNORA31.23-201ENST00000517219 133 ntBASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 AC069240.1-201ENST00000548774 375 ntBASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 AC025884.1-201ENST00000556034 378 ntBASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 UBL5P4-201ENST00000562584 236 ntBASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 AC009163.5-201ENST00000575421 637 ntBASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 MIR3939-201ENST00000582614 106 ntBASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 IPO5P1-202ENST00000600039 287 ntBASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 AL356575.1-201ENST00000603008 283 ntBASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 AC108706.1-201ENST00000611053 297 ntBASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 MIR6758-201ENST00000620653 63 ntBASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.94□□□□□ -1.78
UBE3DQ7Z6J8 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
UBE3DQ7Z6J8 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.93□□□□□ -1.78
UBE3DQ7Z6J8 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
UBE3DQ7Z6J8 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC3.93□□□□□ -1.78
UBE3DQ7Z6J8 AC011266.1-201ENST00000624119 3569 ntBASIC3.93□□□□□ -1.78
UBE3DQ7Z6J8 RNA5SP502-201ENST00000362694 119 ntBASIC3.93□□□□□ -1.78
UBE3DQ7Z6J8 RNU6-961P-201ENST00000363893 105 ntBASIC3.93□□□□□ -1.78
UBE3DQ7Z6J8 RNU6-1279P-201ENST00000383917 103 ntBASIC3.93□□□□□ -1.78
UBE3DQ7Z6J8 MIR544A-201ENST00000384855 91 ntBASIC3.93□□□□□ -1.78
UBE3DQ7Z6J8 MIR513A2-201ENST00000385249 127 ntBASIC3.93□□□□□ -1.78
UBE3DQ7Z6J8 SNORA40.19-201ENST00000390846 128 ntBASIC3.93□□□□□ -1.78
UBE3DQ7Z6J8 FTH1P15-201ENST00000406984 280 ntBASIC3.93□□□□□ -1.78
UBE3DQ7Z6J8 Y_RNA.625-201ENST00000411256 107 ntBASIC3.93□□□□□ -1.78
UBE3DQ7Z6J8 AC016397.1-201ENST00000412463 242 ntBASIC3.93□□□□□ -1.78
UBE3DQ7Z6J8 AC004552.1-201ENST00000419089 348 ntBASIC3.93□□□□□ -1.78
UBE3DQ7Z6J8 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC3.93□□□□□ -1.78
UBE3DQ7Z6J8 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC3.93□□□□□ -1.78
UBE3DQ7Z6J8 UQCRBP2-201ENST00000447827 297 ntBASIC3.93□□□□□ -1.78
UBE3DQ7Z6J8 AC010618.1-201ENST00000469924 477 ntBASIC3.93□□□□□ -1.78
UBE3DQ7Z6J8 RPS26P3-201ENST00000470205 348 ntBASIC3.93□□□□□ -1.78
UBE3DQ7Z6J8 AC084357.1-201ENST00000473404 255 ntBASIC3.93□□□□□ -1.78
UBE3DQ7Z6J8 AC090543.2-201ENST00000483963 348 ntBASIC3.93□□□□□ -1.78
UBE3DQ7Z6J8 AC004057.1-201ENST00000485827 348 ntBASIC3.93□□□□□ -1.78
UBE3DQ7Z6J8 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.93□□□□□ -1.78
UBE3DQ7Z6J8 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC3.93□□□□□ -1.78
UBE3DQ7Z6J8 MRPS18CP4-201ENST00000535821 231 ntBASIC3.93□□□□□ -1.78
UBE3DQ7Z6J8 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.93□□□□□ -1.78
UBE3DQ7Z6J8 AP001485.1-201ENST00000604799 199 ntBASIC3.93□□□□□ -1.78
UBE3DQ7Z6J8 AC010999.1-201ENST00000611856 324 ntBASIC3.93□□□□□ -1.78
UBE3DQ7Z6J8 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.93□□□□□ -1.78
UBE3DQ7Z6J8 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
UBE3DQ7Z6J8 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
UBE3DQ7Z6J8 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC3.93□□□□□ -1.78
UBE3DQ7Z6J8 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC3.93□□□□□ -1.78
UBE3DQ7Z6J8 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
UBE3DQ7Z6J8 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
UBE3DQ7Z6J8 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC3.92□□□□□ -1.78
UBE3DQ7Z6J8 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC3.92□□□□□ -1.78
UBE3DQ7Z6J8 AC008725.1-201ENST00000605123 2263 ntBASIC3.92□□□□□ -1.78
UBE3DQ7Z6J8 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
UBE3DQ7Z6J8 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
UBE3DQ7Z6J8 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC3.92□□□□□ -1.78
UBE3DQ7Z6J8 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.92□□□□□ -1.78
UBE3DQ7Z6J8 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.92□□□□□ -1.78
UBE3DQ7Z6J8 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
UBE3DQ7Z6J8 RNA5SP513-201ENST00000364648 118 ntBASIC3.92□□□□□ -1.78
UBE3DQ7Z6J8 RNU6-1280P-201ENST00000365211 107 ntBASIC3.92□□□□□ -1.78
UBE3DQ7Z6J8 RNU6-245P-201ENST00000384020 107 ntBASIC3.92□□□□□ -1.78
UBE3DQ7Z6J8 RNU6-1081P-201ENST00000384537 107 ntBASIC3.92□□□□□ -1.78
UBE3DQ7Z6J8 RNU6-394P-201ENST00000410735 107 ntBASIC3.92□□□□□ -1.78
UBE3DQ7Z6J8 HSPE1P12-201ENST00000412576 301 ntBASIC3.92□□□□□ -1.78
UBE3DQ7Z6J8 AC244670.1-201ENST00000436879 112 ntBASIC3.92□□□□□ -1.78
UBE3DQ7Z6J8 RPL23AP46-201ENST00000438548 490 ntBASIC3.92□□□□□ -1.78
UBE3DQ7Z6J8 AC012308.1-201ENST00000451232 178 ntBASIC3.92□□□□□ -1.78
UBE3DQ7Z6J8 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC3.92□□□□□ -1.78
UBE3DQ7Z6J8 RPS27AP10-201ENST00000496103 208 ntBASIC3.92□□□□□ -1.78
UBE3DQ7Z6J8 AC022559.1-201ENST00000520905 205 ntBASIC3.92□□□□□ -1.78
UBE3DQ7Z6J8 AC115990.1-201ENST00000526957 301 ntBASIC3.92□□□□□ -1.78
UBE3DQ7Z6J8 AC011602.1-201ENST00000546484 331 ntBASIC3.92□□□□□ -1.78
UBE3DQ7Z6J8 MIR5692C2-201ENST00000577959 77 ntBASIC3.92□□□□□ -1.78
UBE3DQ7Z6J8 AC004832.4-201ENST00000608952 331 ntBASIC3.92□□□□□ -1.78
UBE3DQ7Z6J8 MIR378J-201ENST00000611988 109 ntBASIC3.92□□□□□ -1.78
UBE3DQ7Z6J8 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.92□□□□□ -1.78
UBE3DQ7Z6J8 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.92□□□□□ -1.78
UBE3DQ7Z6J8 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.92□□□□□ -1.78
UBE3DQ7Z6J8 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC3.92□□□□□ -1.78
UBE3DQ7Z6J8 ADAM3A-203ENST00000461344 2157 ntBASIC3.92□□□□□ -1.78
UBE3DQ7Z6J8 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
UBE3DQ7Z6J8 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC3.91□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 239 ms