Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 TRBVA-201ENST00000498804 316 ntBASIC0.19□□□□□ -2.38
USF3Q68DE3 RNU6-667P-201ENST00000517186 102 ntBASIC0.19□□□□□ -2.38
USF3Q68DE3 MDM2-232ENST00000544561 213 ntTSL 5 BASIC0.19□□□□□ -2.38
USF3Q68DE3 AC018659.1-201ENST00000551083 169 ntBASIC0.19□□□□□ -2.38
USF3Q68DE3 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.19□□□□□ -2.38
USF3Q68DE3 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC0.19□□□□□ -2.38
USF3Q68DE3 AP003465.2-201ENST00000602571 373 ntBASIC0.19□□□□□ -2.38
USF3Q68DE3 AC091057.3-201ENST00000602684 733 ntBASIC0.19□□□□□ -2.38
USF3Q68DE3 AL158032.1-201ENST00000605401 106 ntBASIC0.19□□□□□ -2.38
USF3Q68DE3 AC093913.1-201ENST00000614178 329 ntBASIC0.19□□□□□ -2.38
USF3Q68DE3 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.19□□□□□ -2.38
USF3Q68DE3 AC009269.6-201ENST00000621778 588 ntBASIC0.19□□□□□ -2.38
USF3Q68DE3 PLD1-217ENST00000627725 174 ntTSL 5 BASIC0.19□□□□□ -2.38
USF3Q68DE3 RNU6-878P-201ENST00000384578 110 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 RNU6-1237P-201ENST00000384777 107 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 MIR194-1-201ENST00000384892 85 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 HMGB1P17-201ENST00000403495 628 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 AL161935.2-201ENST00000414627 60 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC0.18□□□□□ -2.38
USF3Q68DE3 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC0.18□□□□□ -2.38
USF3Q68DE3 MTND2P5-201ENST00000432656 1006 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 AC069257.2-201ENST00000441819 155 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 AL929288.2-201ENST00000446368 407 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 RNU6-333P-201ENST00000459117 107 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 AC002350.1-201ENST00000490759 375 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 AC048346.1-201ENST00000510247 144 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 SNORA31.4-201ENST00000516049 129 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 RNA5SP255-201ENST00000516370 107 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 ACA59.2-201ENST00000517061 156 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 AC136628.3-201ENST00000521868 290 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC0.18□□□□□ -2.38
USF3Q68DE3 LARP7P2-201ENST00000575306 125 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 Z83818.1-201ENST00000603584 150 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 AC004853.1-201ENST00000604902 698 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 AC040896.1-201ENST00000613819 479 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 AC004009.2-201ENST00000623016 728 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 AC092447.10-201ENST00000620607 1652 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 RNU6-546P-201ENST00000383991 107 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 TMSB4XP8-201ENST00000402089 135 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.18□□□□□ -2.38
USF3Q68DE3 TMSB4XP6-201ENST00000415187 135 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 RPS3AP37-201ENST00000419176 745 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC0.18□□□□□ -2.38
USF3Q68DE3 TMSB4XP1-201ENST00000424567 135 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC0.18□□□□□ -2.38
USF3Q68DE3 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC0.18□□□□□ -2.38
USF3Q68DE3 AC099677.2-201ENST00000436385 175 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 HSPE1P9-201ENST00000440046 311 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 AC013828.1-201ENST00000481845 158 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 HMGN1P13-201ENST00000505795 138 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 AC121161.1-201ENST00000510606 652 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC0.18□□□□□ -2.38
USF3Q68DE3 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC0.18□□□□□ -2.38
USF3Q68DE3 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC0.18□□□□□ -2.38
USF3Q68DE3 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC0.18□□□□□ -2.38
USF3Q68DE3 AL590705.4-201ENST00000532209 134 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 MIR4305-201ENST00000583252 102 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 AL353997.4-201ENST00000586196 166 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 AL158211.4-201ENST00000606988 584 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 AC100812.1-201ENST00000607622 580 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 AC096586.1-201ENST00000610267 561 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 AC107075.1-201ENST00000613695 314 ntBASIC0.18□□□□□ -2.38
USF3Q68DE3 TEX41-243ENST00000614173 190 ntTSL 5 BASIC0.18□□□□□ -2.38
USF3Q68DE3 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC0.18□□□□□ -2.38
USF3Q68DE3 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC0.18□□□□□ -2.38
USF3Q68DE3 RNU6-439P-201ENST00000384188 106 ntBASIC0.17□□□□□ -2.38
USF3Q68DE3 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC0.17□□□□□ -2.38
USF3Q68DE3 AC114482.1-201ENST00000418010 247 ntBASIC0.17□□□□□ -2.38
USF3Q68DE3 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC0.17□□□□□ -2.38
USF3Q68DE3 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC0.17□□□□□ -2.38
USF3Q68DE3 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.17□□□□□ -2.38
USF3Q68DE3 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC0.17□□□□□ -2.38
USF3Q68DE3 RAP1BP2-201ENST00000478270 544 ntBASIC0.17□□□□□ -2.38
USF3Q68DE3 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC0.17□□□□□ -2.38
USF3Q68DE3 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC0.17□□□□□ -2.38
USF3Q68DE3 SCARNA1-201ENST00000517138 166 ntBASIC0.17□□□□□ -2.38
USF3Q68DE3 RN7SKP256-201ENST00000517201 314 ntBASIC0.17□□□□□ -2.38
USF3Q68DE3 RNU6-586P-201ENST00000517265 104 ntBASIC0.17□□□□□ -2.38
USF3Q68DE3 IGJP1-201ENST00000522682 475 ntBASIC0.17□□□□□ -2.38
USF3Q68DE3 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC0.17□□□□□ -2.38
USF3Q68DE3 AC022616.8-201ENST00000533569 253 ntBASIC0.17□□□□□ -2.38
USF3Q68DE3 SNRPGP20-201ENST00000604477 205 ntBASIC0.17□□□□□ -2.38
USF3Q68DE3 BNIP3P31-201ENST00000604515 566 ntBASIC0.17□□□□□ -2.38
USF3Q68DE3 AC112220.3-201ENST00000605502 502 ntBASIC0.17□□□□□ -2.38
USF3Q68DE3 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC0.17□□□□□ -2.38
USF3Q68DE3 AL357075.2-201ENST00000614906 189 ntBASIC0.17□□□□□ -2.38
USF3Q68DE3 AL158163.2-201ENST00000619110 700 ntBASIC0.17□□□□□ -2.38
USF3Q68DE3 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC0.17□□□□□ -2.38
USF3Q68DE3 Y_RNA.167-201ENST00000363735 109 ntBASIC0.17□□□□□ -2.38
USF3Q68DE3 RNU6-944P-201ENST00000364023 107 ntBASIC0.17□□□□□ -2.38
USF3Q68DE3 AL353621.1-201ENST00000418219 243 ntBASIC0.17□□□□□ -2.38
USF3Q68DE3 SKA2P1-201ENST00000425592 390 ntBASIC0.17□□□□□ -2.38
USF3Q68DE3 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.17□□□□□ -2.38
USF3Q68DE3 RNU6-678P-201ENST00000516832 109 ntBASIC0.17□□□□□ -2.38
USF3Q68DE3 AC008088.1-201ENST00000580993 280 ntBASIC0.17□□□□□ -2.38
USF3Q68DE3 AC091946.2-201ENST00000606105 291 ntBASIC0.17□□□□□ -2.38
USF3Q68DE3 AC013476.2-201ENST00000614456 459 ntBASIC0.17□□□□□ -2.38
USF3Q68DE3 AC007792.1-201ENST00000623023 402 ntBASIC0.17□□□□□ -2.38
USF3Q68DE3 RNU6-252P-201ENST00000363232 107 ntBASIC0.16□□□□□ -2.38
USF3Q68DE3 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC0.16□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms