Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 AC069528.2-201ENST00000624849 1991 ntBASIC2.89□□□□□ -1.95
SHMT1P34896 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
SHMT1P34896 Y_RNA.88-201ENST00000363029 99 ntBASIC2.89□□□□□ -1.95
SHMT1P34896 RNU6-898P-201ENST00000365627 104 ntBASIC2.89□□□□□ -1.95
SHMT1P34896 MIR518D-201ENST00000385014 87 ntBASIC2.89□□□□□ -1.95
SHMT1P34896 U3.37-201ENST00000408528 213 ntBASIC2.89□□□□□ -1.95
SHMT1P34896 AC023141.4-201ENST00000412031 328 ntBASIC2.89□□□□□ -1.95
SHMT1P34896 PGBD4P6-201ENST00000421501 610 ntBASIC2.89□□□□□ -1.95
SHMT1P34896 SAR1AP4-201ENST00000429225 591 ntBASIC2.89□□□□□ -1.95
SHMT1P34896 NDUFA5P4-201ENST00000436704 385 ntBASIC2.89□□□□□ -1.95
SHMT1P34896 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC2.89□□□□□ -1.95
SHMT1P34896 RPL39P40-201ENST00000445481 146 ntBASIC2.89□□□□□ -1.95
SHMT1P34896 MTND3P10-201ENST00000450967 341 ntBASIC2.89□□□□□ -1.95
SHMT1P34896 RPS29P12-201ENST00000460178 152 ntBASIC2.89□□□□□ -1.95
SHMT1P34896 AC234781.5-201ENST00000508429 271 ntBASIC2.89□□□□□ -1.95
SHMT1P34896 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.89□□□□□ -1.95
SHMT1P34896 FAM206BP-201ENST00000510179 541 ntBASIC2.89□□□□□ -1.95
SHMT1P34896 TBCAP3-201ENST00000512475 312 ntBASIC2.89□□□□□ -1.95
SHMT1P34896 AC025465.4-201ENST00000513422 638 ntBASIC2.89□□□□□ -1.95
SHMT1P34896 SNORA19.2-201ENST00000516013 114 ntBASIC2.89□□□□□ -1.95
SHMT1P34896 RNU6-1314P-201ENST00000517139 104 ntBASIC2.89□□□□□ -1.95
SHMT1P34896 RPL23AP78-201ENST00000599928 470 ntBASIC2.89□□□□□ -1.95
SHMT1P34896 AC093913.1-201ENST00000614178 329 ntBASIC2.89□□□□□ -1.95
SHMT1P34896 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC2.89□□□□□ -1.95
SHMT1P34896 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC2.89□□□□□ -1.95
SHMT1P34896 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.89□□□□□ -1.95
SHMT1P34896 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.89□□□□□ -1.95
SHMT1P34896 AC099654.7-201ENST00000635788 2127 ntBASIC2.89□□□□□ -1.95
SHMT1P34896 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.88□□□□□ -1.95
SHMT1P34896 Y_RNA.160-201ENST00000363677 92 ntBASIC2.88□□□□□ -1.95
SHMT1P34896 SNORD113-7-201ENST00000363762 77 ntBASIC2.88□□□□□ -1.95
SHMT1P34896 SNORD114-30-201ENST00000364448 72 ntBASIC2.88□□□□□ -1.95
SHMT1P34896 Y_RNA.390-201ENST00000383932 102 ntBASIC2.88□□□□□ -1.95
SHMT1P34896 RNA5SP354-201ENST00000391247 136 ntBASIC2.88□□□□□ -1.95
SHMT1P34896 AL139095.1-201ENST00000404326 391 ntBASIC2.88□□□□□ -1.95
SHMT1P34896 RNU4-53P-201ENST00000410828 140 ntBASIC2.88□□□□□ -1.95
SHMT1P34896 AC138393.2-201ENST00000414742 246 ntBASIC2.88□□□□□ -1.95
SHMT1P34896 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC2.88□□□□□ -1.95
SHMT1P34896 AL513185.2-201ENST00000425543 193 ntBASIC2.88□□□□□ -1.95
SHMT1P34896 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.88□□□□□ -1.95
SHMT1P34896 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC2.88□□□□□ -1.95
SHMT1P34896 AC133134.1-201ENST00000466800 359 ntBASIC2.88□□□□□ -1.95
SHMT1P34896 TRBVA-201ENST00000498804 316 ntBASIC2.88□□□□□ -1.95
SHMT1P34896 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.88□□□□□ -1.95
SHMT1P34896 RNU6-1069P-201ENST00000516612 133 ntBASIC2.88□□□□□ -1.95
SHMT1P34896 AP000763.2-201ENST00000540641 163 ntBASIC2.88□□□□□ -1.95
SHMT1P34896 AC025281.1-201ENST00000567026 265 ntBASIC2.88□□□□□ -1.95
SHMT1P34896 MIR5092-201ENST00000583139 88 ntBASIC2.88□□□□□ -1.95
SHMT1P34896 AC011712.1-201ENST00000588959 234 ntBASIC2.88□□□□□ -1.95
SHMT1P34896 AC103810.6-201ENST00000606708 136 ntBASIC2.88□□□□□ -1.95
SHMT1P34896 AC046143.2-201ENST00000609789 160 ntBASIC2.88□□□□□ -1.95
SHMT1P34896 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
SHMT1P34896 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC2.88□□□□□ -1.95
SHMT1P34896 SCARNA4-202ENST00000625402 129 ntBASIC2.88□□□□□ -1.95
SHMT1P34896 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.88□□□□□ -1.95
SHMT1P34896 AC016717.2-201ENST00000609089 5141 ntBASIC2.88□□□□□ -1.95
SHMT1P34896 ZNF658B-202ENST00000615961 3375 ntBASIC2.87□□□□□ -1.95
SHMT1P34896 CDC27P3-201ENST00000635418 1910 ntBASIC2.87□□□□□ -1.95
SHMT1P34896 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
SHMT1P34896 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
SHMT1P34896 SNORD21-201ENST00000383953 95 ntBASIC2.87□□□□□ -1.95
SHMT1P34896 RNU6-72P-201ENST00000384285 79 ntBASIC2.87□□□□□ -1.95
SHMT1P34896 MIR767-201ENST00000390228 109 ntBASIC2.87□□□□□ -1.95
SHMT1P34896 AC016831.2-201ENST00000417179 352 ntBASIC2.87□□□□□ -1.95
SHMT1P34896 RPL21P111-201ENST00000418453 477 ntBASIC2.87□□□□□ -1.95
SHMT1P34896 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.87□□□□□ -1.95
SHMT1P34896 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC2.87□□□□□ -1.95
SHMT1P34896 MTND4LP11-201ENST00000422184 280 ntBASIC2.87□□□□□ -1.95
SHMT1P34896 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC2.87□□□□□ -1.95
SHMT1P34896 RPL23AP58-201ENST00000440453 469 ntBASIC2.87□□□□□ -1.95
SHMT1P34896 AC006026.2-201ENST00000457376 180 ntBASIC2.87□□□□□ -1.95
SHMT1P34896 AC087884.1-201ENST00000469738 328 ntBASIC2.87□□□□□ -1.95
SHMT1P34896 RNA5SP76-201ENST00000516277 87 ntBASIC2.87□□□□□ -1.95
SHMT1P34896 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC2.87□□□□□ -1.95
SHMT1P34896 AC006199.1-201ENST00000548728 219 ntBASIC2.87□□□□□ -1.95
SHMT1P34896 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC2.87□□□□□ -1.95
SHMT1P34896 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
SHMT1P34896 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
SHMT1P34896 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC2.86□□□□□ -1.95
SHMT1P34896 ZBTB8OSP1-201ENST00000342688 498 ntBASIC2.86□□□□□ -1.95
SHMT1P34896 RNU6-1280P-201ENST00000365211 107 ntBASIC2.86□□□□□ -1.95
SHMT1P34896 SNORA70B-201ENST00000384210 135 ntBASIC2.86□□□□□ -1.95
SHMT1P34896 RNU6-510P-201ENST00000391239 108 ntBASIC2.86□□□□□ -1.95
SHMT1P34896 MIR1261-201ENST00000408659 82 ntBASIC2.86□□□□□ -1.95
SHMT1P34896 MORN2-203ENST00000409131 544 ntTSL 5 BASIC2.86□□□□□ -1.95
SHMT1P34896 AC096649.2-201ENST00000416186 393 ntBASIC2.86□□□□□ -1.95
SHMT1P34896 AL096701.2-201ENST00000416920 238 ntBASIC2.86□□□□□ -1.95
SHMT1P34896 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC2.86□□□□□ -1.95
SHMT1P34896 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.86□□□□□ -1.95
SHMT1P34896 HIGD1AP2-201ENST00000446367 280 ntBASIC2.86□□□□□ -1.95
SHMT1P34896 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.86□□□□□ -1.95
SHMT1P34896 snoU109.2-201ENST00000459316 135 ntBASIC2.86□□□□□ -1.95
SHMT1P34896 RNU7-138P-201ENST00000459479 64 ntBASIC2.86□□□□□ -1.95
SHMT1P34896 MTCO2P30-201ENST00000503662 364 ntBASIC2.86□□□□□ -1.95
SHMT1P34896 SNORA20.3-201ENST00000516880 132 ntBASIC2.86□□□□□ -1.95
SHMT1P34896 SNORD19.2-201ENST00000516978 73 ntBASIC2.86□□□□□ -1.95
SHMT1P34896 RN7SKP256-201ENST00000517201 314 ntBASIC2.86□□□□□ -1.95
SHMT1P34896 AC087854.1-201ENST00000519706 414 ntBASIC2.86□□□□□ -1.95
SHMT1P34896 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC2.86□□□□□ -1.95
SHMT1P34896 AP004607.1-201ENST00000524456 203 ntBASIC2.86□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 134.3 ms