Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC100812.1-201ENST00000607622 580 ntBASIC0.1□□□□□ -2.39
COL6A3P12111 AL359854.1-201ENST00000614203 1594 ntBASIC0.09□□□□□ -2.39
COL6A3P12111 MTND4P14-201ENST00000435799 1354 ntBASIC0.09□□□□□ -2.39
COL6A3P12111 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC0.09□□□□□ -2.39
COL6A3P12111 Y_RNA.135-201ENST00000363439 95 ntBASIC0.09□□□□□ -2.39
COL6A3P12111 SNORD18A-201ENST00000363753 72 ntBASIC0.09□□□□□ -2.39
COL6A3P12111 SNORD71-201ENST00000411292 86 ntBASIC0.09□□□□□ -2.39
COL6A3P12111 AC078974.1-201ENST00000411597 223 ntBASIC0.09□□□□□ -2.39
COL6A3P12111 AL449283.1-202ENST00000418249 604 ntBASIC0.09□□□□□ -2.39
COL6A3P12111 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC0.09□□□□□ -2.39
COL6A3P12111 AC104689.1-201ENST00000473356 768 ntBASIC0.09□□□□□ -2.39
COL6A3P12111 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC0.09□□□□□ -2.39
COL6A3P12111 RNF138P1-201ENST00000502765 546 ntBASIC0.09□□□□□ -2.39
COL6A3P12111 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC0.09□□□□□ -2.39
COL6A3P12111 MTCO2P2-201ENST00000591258 225 ntBASIC0.09□□□□□ -2.39
COL6A3P12111 AC110792.4-201ENST00000609843 298 ntBASIC0.09□□□□□ -2.39
COL6A3P12111 AC007490.1-201ENST00000624321 703 ntBASIC0.09□□□□□ -2.39
COL6A3P12111 U8.7-201ENST00000364940 136 ntBASIC0.09□□□□□ -2.4
COL6A3P12111 MIR1302-8-201ENST00000408342 128 ntBASIC0.09□□□□□ -2.4
COL6A3P12111 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC0.09□□□□□ -2.4
COL6A3P12111 USP9YP17-201ENST00000444617 696 ntBASIC0.09□□□□□ -2.4
COL6A3P12111 AC013267.1-201ENST00000458227 267 ntBASIC0.09□□□□□ -2.4
COL6A3P12111 RPL31P3-201ENST00000458430 332 ntBASIC0.09□□□□□ -2.4
COL6A3P12111 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC0.09□□□□□ -2.4
COL6A3P12111 RNVU1-2-201ENST00000516326 135 ntBASIC0.09□□□□□ -2.4
COL6A3P12111 RNU6-798P-201ENST00000516912 103 ntBASIC0.09□□□□□ -2.4
COL6A3P12111 AC022254.1-201ENST00000567857 235 ntBASIC0.09□□□□□ -2.4
COL6A3P12111 AC144521.1-201ENST00000607148 956 ntBASIC0.09□□□□□ -2.4
COL6A3P12111 AC007349.4-201ENST00000608114 532 ntBASIC0.09□□□□□ -2.4
COL6A3P12111 AP000238.1-201ENST00000608759 426 ntBASIC0.09□□□□□ -2.4
COL6A3P12111 U1.36-201ENST00000620684 176 ntBASIC0.09□□□□□ -2.4
COL6A3P12111 RNA5SP258-201ENST00000362750 119 ntBASIC0.08□□□□□ -2.4
COL6A3P12111 SNORD33-201ENST00000362761 85 ntBASIC0.08□□□□□ -2.4
COL6A3P12111 RNU6-1251P-201ENST00000364502 107 ntBASIC0.08□□□□□ -2.4
COL6A3P12111 RNU6-1207P-201ENST00000384343 107 ntBASIC0.08□□□□□ -2.4
COL6A3P12111 Y_RNA.480-201ENST00000384364 102 ntBASIC0.08□□□□□ -2.4
COL6A3P12111 RNU11-3P-201ENST00000391111 133 ntBASIC0.08□□□□□ -2.4
COL6A3P12111 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC0.08□□□□□ -2.4
COL6A3P12111 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC0.08□□□□□ -2.4
COL6A3P12111 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC0.08□□□□□ -2.4
COL6A3P12111 AC022447.1-201ENST00000515358 464 ntBASIC0.08□□□□□ -2.4
COL6A3P12111 HMSD-204ENST00000526932 162 ntTSL 3 BASIC0.08□□□□□ -2.4
COL6A3P12111 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC0.08□□□□□ -2.4
COL6A3P12111 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC0.08□□□□□ -2.4
COL6A3P12111 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC0.08□□□□□ -2.4
COL6A3P12111 ADAM3B-201ENST00000569937 840 ntBASIC0.08□□□□□ -2.4
COL6A3P12111 EIF1P4-201ENST00000572664 335 ntBASIC0.08□□□□□ -2.4
COL6A3P12111 AL589743.7-201ENST00000612637 233 ntBASIC0.08□□□□□ -2.4
COL6A3P12111 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC0.08□□□□□ -2.4
COL6A3P12111 AL391597.1-201ENST00000618707 694 ntBASIC0.08□□□□□ -2.4
COL6A3P12111 RNU6-251P-201ENST00000363235 104 ntBASIC0.08□□□□□ -2.4
COL6A3P12111 RNU4-12P-201ENST00000365233 139 ntBASIC0.08□□□□□ -2.4
COL6A3P12111 MIR608-201ENST00000384820 100 ntBASIC0.08□□□□□ -2.4
COL6A3P12111 RNA5SP56-201ENST00000410277 118 ntBASIC0.08□□□□□ -2.4
COL6A3P12111 BEND7P1-201ENST00000422058 457 ntBASIC0.08□□□□□ -2.4
COL6A3P12111 RPL36P19-201ENST00000430744 301 ntBASIC0.08□□□□□ -2.4
COL6A3P12111 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC0.08□□□□□ -2.4
COL6A3P12111 Z82210.1-201ENST00000440037 231 ntBASIC0.08□□□□□ -2.4
COL6A3P12111 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC0.08□□□□□ -2.4
COL6A3P12111 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC0.08□□□□□ -2.4
COL6A3P12111 RN7SKP287-201ENST00000516546 266 ntBASIC0.08□□□□□ -2.4
COL6A3P12111 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC0.08□□□□□ -2.4
COL6A3P12111 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC0.08□□□□□ -2.4
COL6A3P12111 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC0.08□□□□□ -2.4
COL6A3P12111 CYP3A52P-201ENST00000563326 91 ntBASIC0.08□□□□□ -2.4
COL6A3P12111 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC0.08□□□□□ -2.4
COL6A3P12111 AC009509.4-201ENST00000619202 509 ntBASIC0.08□□□□□ -2.4
COL6A3P12111 AC091965.5-201ENST00000624785 342 ntBASIC0.08□□□□□ -2.4
COL6A3P12111 AC019226.1-201ENST00000625666 515 ntBASIC0.08□□□□□ -2.4
COL6A3P12111 MIR218-1-201ENST00000384999 110 ntBASIC0.08□□□□□ -2.4
COL6A3P12111 BPY2DP-201ENST00000422208 265 ntBASIC0.08□□□□□ -2.4
COL6A3P12111 AC027119.1-201ENST00000440877 241 ntBASIC0.08□□□□□ -2.4
COL6A3P12111 AC092685.1-201ENST00000447960 1243 ntBASIC0.08□□□□□ -2.4
COL6A3P12111 RPL18AP17-201ENST00000455326 198 ntBASIC0.08□□□□□ -2.4
COL6A3P12111 MRPS17P3-201ENST00000465453 385 ntBASIC0.08□□□□□ -2.4
COL6A3P12111 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC0.08□□□□□ -2.4
COL6A3P12111 AC004923.2-201ENST00000529649 369 ntBASIC0.08□□□□□ -2.4
COL6A3P12111 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC0.08□□□□□ -2.4
COL6A3P12111 MIR3167-201ENST00000579623 85 ntBASIC0.08□□□□□ -2.4
COL6A3P12111 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC0.08□□□□□ -2.4
COL6A3P12111 AC004908.3-201ENST00000610248 625 ntBASIC0.08□□□□□ -2.4
COL6A3P12111 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC0.08□□□□□ -2.4
COL6A3P12111 AC068057.2-201ENST00000624047 895 ntBASIC0.08□□□□□ -2.4
COL6A3P12111 AL109659.3-201ENST00000624985 950 ntBASIC0.08□□□□□ -2.4
COL6A3P12111 RNU5E-1-201ENST00000362477 120 ntBASIC0.07□□□□□ -2.4
COL6A3P12111 RNU6-697P-201ENST00000363348 107 ntBASIC0.07□□□□□ -2.4
COL6A3P12111 RNU1-119P-201ENST00000391122 165 ntBASIC0.07□□□□□ -2.4
COL6A3P12111 RNU2-36P-201ENST00000410361 191 ntBASIC0.07□□□□□ -2.4
COL6A3P12111 USP9YP26-201ENST00000421008 661 ntBASIC0.07□□□□□ -2.4
COL6A3P12111 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC0.07□□□□□ -2.4
COL6A3P12111 AL714022.1-201ENST00000439897 151 ntBASIC0.07□□□□□ -2.4
COL6A3P12111 EXOSC3P1-201ENST00000448649 500 ntBASIC0.07□□□□□ -2.4
COL6A3P12111 MTND2P19-201ENST00000449129 1012 ntBASIC0.07□□□□□ -2.4
COL6A3P12111 RPS26P45-201ENST00000471748 340 ntBASIC0.07□□□□□ -2.4
COL6A3P12111 AC116337.2-201ENST00000477662 156 ntBASIC0.07□□□□□ -2.4
COL6A3P12111 AC107027.2-201ENST00000512197 115 ntBASIC0.07□□□□□ -2.4
COL6A3P12111 SNORA31.22-201ENST00000517204 135 ntBASIC0.07□□□□□ -2.4
COL6A3P12111 CASP1-212ENST00000531166 300 ntTSL 5 BASIC0.07□□□□□ -2.4
COL6A3P12111 POC1B-211ENST00000549504 581 ntTSL 5 BASIC0.07□□□□□ -2.4
COL6A3P12111 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC0.07□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms