Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.25□□□□□ -1.89
HOXA3O43365 RNA5SP143-201ENST00000516936 115 ntBASIC3.25□□□□□ -1.89
HOXA3O43365 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.25□□□□□ -1.89
HOXA3O43365 AC016256.1-201ENST00000547971 354 ntBASIC3.25□□□□□ -1.89
HOXA3O43365 AC006199.1-201ENST00000548728 219 ntBASIC3.25□□□□□ -1.89
HOXA3O43365 HSPE1P4-201ENST00000550617 308 ntBASIC3.25□□□□□ -1.89
HOXA3O43365 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC3.25□□□□□ -1.89
HOXA3O43365 MIR4659A-201ENST00000580269 81 ntBASIC3.25□□□□□ -1.89
HOXA3O43365 MIR4300-201ENST00000581016 96 ntBASIC3.25□□□□□ -1.89
HOXA3O43365 AC011476.5-201ENST00000615594 130 ntBASIC3.25□□□□□ -1.89
HOXA3O43365 AP001282.2-201ENST00000616149 309 ntBASIC3.25□□□□□ -1.89
HOXA3O43365 MIR376A1-201ENST00000616574 68 ntBASIC3.25□□□□□ -1.89
HOXA3O43365 MIR6076-201ENST00000617521 113 ntBASIC3.25□□□□□ -1.89
HOXA3O43365 AL354798.1-201ENST00000622505 329 ntBASIC3.25□□□□□ -1.89
HOXA3O43365 MIR3199-2-201ENST00000636243 86 ntBASIC3.25□□□□□ -1.89
HOXA3O43365 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
HOXA3O43365 OFD1P6Y-202ENST00000451061 2724 ntBASIC3.25□□□□□ -1.89
HOXA3O43365 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC3.25□□□□□ -1.89
HOXA3O43365 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXA3O43365 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC3.24□□□□□ -1.89
HOXA3O43365 RNU1-15P-201ENST00000353977 144 ntBASIC3.24□□□□□ -1.89
HOXA3O43365 RNU6-1141P-201ENST00000364520 107 ntBASIC3.24□□□□□ -1.89
HOXA3O43365 RNU6-843P-201ENST00000384454 104 ntBASIC3.24□□□□□ -1.89
HOXA3O43365 SNORD78.2-201ENST00000391076 69 ntBASIC3.24□□□□□ -1.89
HOXA3O43365 MTHFD2P2-201ENST00000407725 247 ntBASIC3.24□□□□□ -1.89
HOXA3O43365 RPL23AP82-202ENST00000427528 469 ntBASIC3.24□□□□□ -1.89
HOXA3O43365 EIF1P2-201ENST00000428233 350 ntBASIC3.24□□□□□ -1.89
HOXA3O43365 TBCAP1-201ENST00000436520 327 ntBASIC3.24□□□□□ -1.89
HOXA3O43365 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC3.24□□□□□ -1.89
HOXA3O43365 AC012308.1-201ENST00000451232 178 ntBASIC3.24□□□□□ -1.89
HOXA3O43365 AP000870.1-201ENST00000472927 406 ntBASIC3.24□□□□□ -1.89
HOXA3O43365 RPS4XP22-201ENST00000480755 780 ntBASIC3.24□□□□□ -1.89
HOXA3O43365 AP001025.1-201ENST00000486139 332 ntBASIC3.24□□□□□ -1.89
HOXA3O43365 RPS26P15-201ENST00000488067 348 ntBASIC3.24□□□□□ -1.89
HOXA3O43365 BTF3L4P4-201ENST00000506381 449 ntBASIC3.24□□□□□ -1.89
HOXA3O43365 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.24□□□□□ -1.89
HOXA3O43365 HMGN2P15-201ENST00000585707 270 ntBASIC3.24□□□□□ -1.89
HOXA3O43365 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXA3O43365 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
HOXA3O43365 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXA3O43365 MIR3529-201ENST00000637713 78 ntBASIC3.24□□□□□ -1.89
HOXA3O43365 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXA3O43365 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC3.24□□□□□ -1.89
HOXA3O43365 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXA3O43365 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXA3O43365 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
HOXA3O43365 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXA3O43365 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.24□□□□□ -1.89
HOXA3O43365 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HOXA3O43365 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXA3O43365 AC018555.1-201ENST00000567548 1980 ntBASIC3.23□□□□□ -1.89
HOXA3O43365 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.23□□□□□ -1.89
HOXA3O43365 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXA3O43365 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXA3O43365 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
HOXA3O43365 RNU6-879P-201ENST00000364328 108 ntBASIC3.23□□□□□ -1.89
HOXA3O43365 Y_RNA.237-201ENST00000364439 102 ntBASIC3.23□□□□□ -1.89
HOXA3O43365 RNU6-318P-201ENST00000384283 103 ntBASIC3.23□□□□□ -1.89
HOXA3O43365 RNU6-541P-201ENST00000384709 110 ntBASIC3.23□□□□□ -1.89
HOXA3O43365 RNA5SP213-201ENST00000391031 106 ntBASIC3.23□□□□□ -1.89
HOXA3O43365 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
HOXA3O43365 UBA52P6-201ENST00000399822 382 ntBASIC3.23□□□□□ -1.89
HOXA3O43365 RNU2-20P-201ENST00000410425 191 ntBASIC3.23□□□□□ -1.89
HOXA3O43365 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC3.23□□□□□ -1.89
HOXA3O43365 GPM6BP3-201ENST00000442797 145 ntBASIC3.23□□□□□ -1.89
HOXA3O43365 AL358232.1-201ENST00000448030 501 ntBASIC3.23□□□□□ -1.89
HOXA3O43365 AL590664.1-201ENST00000448065 339 ntBASIC3.23□□□□□ -1.89
HOXA3O43365 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXA3O43365 AC016632.1-201ENST00000503994 196 ntBASIC3.23□□□□□ -1.89
HOXA3O43365 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HOXA3O43365 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.23□□□□□ -1.89
HOXA3O43365 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXA3O43365 RNA5SP309-201ENST00000516670 106 ntBASIC3.23□□□□□ -1.89
HOXA3O43365 ACA59.2-201ENST00000517061 156 ntBASIC3.23□□□□□ -1.89
HOXA3O43365 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.23□□□□□ -1.89
HOXA3O43365 IGKV2OR2-8-201ENST00000558710 300 ntBASIC3.23□□□□□ -1.89
HOXA3O43365 MIR5571-201ENST00000577998 113 ntBASIC3.23□□□□□ -1.89
HOXA3O43365 MIR4444-1-201ENST00000581696 74 ntBASIC3.23□□□□□ -1.89
HOXA3O43365 MIR4444-2-201ENST00000584390 74 ntBASIC3.23□□□□□ -1.89
HOXA3O43365 AC137590.2-201ENST00000619709 240 ntBASIC3.23□□□□□ -1.89
HOXA3O43365 AC039056.2-201ENST00000622261 511 ntBASIC3.23□□□□□ -1.89
HOXA3O43365 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.23□□□□□ -1.89
HOXA3O43365 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
HOXA3O43365 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HOXA3O43365 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.23□□□□□ -1.89
HOXA3O43365 AL133383.2-201ENST00000622958 2336 ntBASIC3.22□□□□□ -1.89
HOXA3O43365 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.22□□□□□ -1.89
HOXA3O43365 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.22□□□□□ -1.89
HOXA3O43365 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
HOXA3O43365 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
HOXA3O43365 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
HOXA3O43365 AL391987.6-201ENST00000305671 199 ntBASIC3.22□□□□□ -1.89
HOXA3O43365 MIR335-201ENST00000362173 94 ntBASIC3.22□□□□□ -1.89
HOXA3O43365 Y_RNA.416-201ENST00000384014 113 ntBASIC3.22□□□□□ -1.89
HOXA3O43365 RNU6-213P-201ENST00000384051 104 ntBASIC3.22□□□□□ -1.89
HOXA3O43365 Y_RNA.515-201ENST00000384535 112 ntBASIC3.22□□□□□ -1.89
HOXA3O43365 RNU1-139P-201ENST00000391307 165 ntBASIC3.22□□□□□ -1.89
HOXA3O43365 RNA5SP390-201ENST00000410191 113 ntBASIC3.22□□□□□ -1.89
HOXA3O43365 SNORA57.3-201ENST00000411095 141 ntBASIC3.22□□□□□ -1.89
HOXA3O43365 AC004383.1-201ENST00000438135 289 ntBASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 115.4 ms